LOCUS BC125019 5260 bp mRNA linear HUM 26-JUN-2007
DEFINITION Homo sapiens SEC16 homolog A (S. cerevisiae), mRNA (cDNA clone
IMAGE:40072123), partial cds.
ACCESSION BC125019
VERSION BC125019.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5260)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 5260)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-OCT-2006) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 18 Row: k Column: 22.
FEATURES Location/Qualifiers
source 1..5260
/db_xref="H-InvDB:HIT000388486"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:40072123"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_283"
/note="Vector: pCR-Blunt II-TOPO with reversed insert;
Clone identification sequence tag: TGTATCCAA sequenced
from the reverse primer"
gene <1..5260
/gene="SEC16A"
/gene_synonym="p250"
/gene_synonym="RP11-413M3.10"
/gene_synonym="SEC16L"
/db_xref="GeneID:9919"
/db_xref="HGNC:HGNC:29006"
CDS <1..5184
/gene="SEC16A"
/gene_synonym="p250"
/gene_synonym="RP11-413M3.10"
/gene_synonym="SEC16L"
/codon_start=1
/product="SEC16A protein"
/protein_id="AAI25020.1"
/db_xref="GeneID:9919"
/db_xref="HGNC:HGNC:29006"
/translation="MFFQGGETENEENLSSEKAGLSGQADFDDFCSSPGLGRPPAPTH
VGAGSLCQALLPGPSNEAAGDVWGDTASTGVPDASGSQYENVENLEFVQNQEVLPSEP
LNLDPSSPSDQFRYGPLPGPAVPRHGAVCHTGAPDATLHTVHPDSVSSSYSSRSHGRL
SGSARPQELVGTFIQQEVGKPEDEASGSFFKQIDSSPVGGETDETTVSQNYRGSVSQP
STPSPPKPTGIFQTSANSSFEPVKSHLVGVKPFEADRANVVGEVRETCVRQKQCRPAA
ALPDASPGNLEQPPDNMETLCAPQVCPLPLNSTTEAVHMLPHAGAPPLDTVYPAPEKR
PSARTQGPVKCESPATTLWAQSELPDFGGNVLLAPAAPALYVCAKPQPPVVQPPEEAM
SGQQSRNPSSAAPVQSRGGIGASENLENPPKMGEEEALQSQVTKDAQGQPGLERAQQE
LVPPQQQASPPQLPKAMFSELSNPESLPAQGQAQNSAQSPASLVLVDAGQQLPPRPPQ
SSSVSLVSSGSGQAAVPSEQPWPQPVPALAPGPPPQDLAAYYYYRPLYDAYQPQYSLP
YPPEPGAASLYYQDVYSLYEPRYRPYDGAASAYAQNYRYPEPERPSSRASHSSERPPP
RQGYPEGYYSSKSGWSSQSDYYASYYSSQYDYGDPGHWDRYHYSARVRDPRTYDRRYW
CDAEYDAYRREHSAFGDRPEKRDNNWRYDPRFTGSFDDDPDPHRDPYGEEVDRRSVHS
EHSARSLHSAHSLASRRSSLSSHSHQSQIYRSHNVAAGSYEAPLPPGSFHGDFAYGTY
RSNFSSGPGFPEYGYPADTVWPAMEQVSSRPTSPEKFSVPHVCARFGPGGQLIKVIPN
LPSEGQPALVEVHSMEALLQHTSEQEEMRAFPGPLAKDDTHKVDVINFAQNKAMKCLQ
NENLIDKESASLLWNFIVLLCRQNGTVVGTDIAELLLRDHRTVWLPGKSPNEANLIDF
TNEAVEQVEEEESGEAQLSFLTGGPAAAASSLERETERFRELLLYGRKKDALESAMKN
GLWGHALLLASKMDSRTHARVMTRFANSLPINDPLQTVYQLMSGRMPAASTCCGDEKW
GDWRPHLAMVLSNLNNNMDVESRTMATMGDTLASRGLLDAAHFCYLMAQAGFGVYTKK
TTKLVLIGSNHSLPFLKFATNEAIQRTEAYEYAQSLGAETCPLPSFQVFKFIYSCRLA
EMGLATQAFHYCEAIAKSILTQPHLYSPVLISQLVQMASQLRLFDPQLKEKPEEESLA
APTWLVHLQQVERQIKEGAGVWHQDGALPQQCPGTPSSEMEQLDRPGLSQPGALGIAN
PLLAVPAPSPEHSSPSVRLLPSAPQTLPDGPLASPARVPMFPVPLPPGPLEPGPGCVT
PGPALGFLEPSGPGLPPGVPPLQERRHLLQEARSPDPGIVPQEAPVGNSLSELSEENF
DGKFANLTPSRTVPDSEAPPGWDRADSGPTQPPLSLSPAPETKRPGQAAKKETKEPKK
GESWFFRWLPGKKKTEAYLPDDKNKSIVWDEKKNQWVNLNEPEEEKKAPPPPPTSMPK
TVQAAPPALPGPPGAPVNMYSRRAAGTRARYVDVLNPSGTQRSEPALAPADFVAPLAP
LPIPSNLFVPTPDAEEPQLPDGTGREGPAAARGLANPEPAPEPKVLSSAASLPGSELP
SSRPEGSQGGEAPGDLPAAGGPPSGAMPFYNPAQLAQACATSGSSRLGRIGQRKHLVL
N"
BASE COUNT 1175 a 1614 c 1469 g 1002 t
ORIGIN
1 atgtttttcc aagggggaga gacagaaaat gaggagaatc tctcatctga aaaagcaggc
61 ttatctggtc aagcggactt tgacgatttc tgctccagcc ctgggctagg ccgtccgccc
121 gcacctacac acgtgggggc aggcagcctc tgccaggccc ttctcccagg ccccagcaat
181 gaggctgctg gtgatgtgtg gggtgacaca gcgagcacag gggtgccgga tgccagcggc
241 tcgcagtatg agaatgttga gaacttagaa tttgttcaga atcaagaagt tctgccaagt
301 gagcccctca atttggaccc ttcctccccg agtgaccagt tcagatatgg gccccttcct
361 gggccagctg tgcccaggca tggtgctgtg tgccacaccg gagcccctga tgccacactg
421 catacagtgc accctgacag cgtgtcatcc agctatagca gcagaagcca cggaaggctc
481 tcaggctcag ccaggcccca ggagctggtt ggcacattca ttcagcaaga agttggaaaa
541 cccgaggatg aagcttcagg tagttttttt aagcaaatcg attcttctcc cgtaggaggt
601 gaaacagacg agaccactgt gagccagaat taccgtggca gcgtgtccca gccctcaacc
661 ccgagccccc cgaaacctac aggaatattt cagacaagtg caaatagttc tttcgaaccg
721 gtaaaatctc acttagttgg ggtaaaacca tttgaggcag atcgcgccaa cgtggttggt
781 gaagtaaggg agacctgtgt ccgccagaag cagtgcagac cagctgccgc cctgcccgat
841 gcttcccctg gcaacctgga gcagccacca gacaacatgg agaccctctg tgcaccccag
901 gtctgtcccc tgcctcttaa ctccaccacg gaagctgtgc acatgcttcc gcacgcaggg
961 gcaccgccct tggatactgt gtatccagca cccgagaaga ggccttcagc caggacccag
1021 gggcccgtga agtgtgagag cccagcaacg actctgtggg cgcaaagtga gctgccagat
1081 tttggaggca acgtccttct ggcccctgca gccccggcgc tttatgtgtg tgcaaaacct
1141 cagccacctg ttgttcagcc tccagaagag gcgatgtccg ggcagcagtc acggaaccca
1201 agctcggcgg ccccggtgca gagccgaggt ggcattggtg cttctgagaa ccttgagaat
1261 cctcccaaaa tgggagagga ggaggccctt cagtcccagg tcacgaaaga tgcccagggc
1321 cagcctggcc tcgaaagagc ccagcaggag ctggtgccac cccagcaaca ggcttctccc
1381 ccacaactac ccaaagccat gttttcggag ctgtcaaatc cagaaagtct gcccgcacag
1441 ggacaggccc agaactcagc acagtcacca gcaagtctgg ttctggtcga cgcgggtcag
1501 cagctgcccc ctcggcctcc tcagtcctct agcgtgtctc tggtgtccag tggctccggc
1561 caggcagctg tgccgtcaga gcagccgtgg ccacagccag tgcctgcact tgcccccggc
1621 ccaccgcctc aggacctggc cgcctactac tactaccggc ctttgtacga tgcctaccag
1681 cctcagtact ctttgccgta cccaccggag cctggcgcag cctccctcta ttaccaggat
1741 gtctacagcc tctatgagcc tcgatacagg ccctatgatg gtgctgcgtc tgcttacgcc
1801 cagaactacc gctatcccga gcccgagcgg cccagctccc gagccagcca ctcctcggaa
1861 cggccacctc ccaggcaagg atatcctgaa ggatactata gttccaaaag tggatggagc
1921 agtcagagcg attactatgc aagctattac tccagccagt acgattatgg agatccaggt
1981 cactgggatc gttaccacta cagtgctaga gtcagggacc cccgcaccta tgaccggagg
2041 tattggtgtg atgcagagta tgacgcatac aggagagagc actctgcctt cggggacagg
2101 cccgagaaac gtgacaacaa ctggaggtac gatcctcgct tcacggggag ttttgacgat
2161 gaccccgatc cgcacagaga cccttatggg gaagaggtgg accggcgcag cgtccacagc
2221 gagcactcgg cacggagcct gcacagcgca cacagcctgg ccagccgccg cagcagcctc
2281 agctcccact cgcaccagag tcagatttac agaagccaca atgtggctgc cggttcctac
2341 gaggccccgc ttcctccagg ctcctttcac ggcgattttg cctacggcac ctaccgcagc
2401 aatttcagca gtggccccgg cttcccagag tatggctacc ctgccgacac cgtctggcct
2461 gccatggagc aagtttcatc aagaccaact tctcctgaaa aattttcagt gcctcatgtc
2521 tgtgccaggt ttggccctgg cggtcagctt atcaaagtga ttcccaatct gccttcagaa
2581 ggacagccgg ccttggtgga ggtccacagc atggaggcct tgctgcagca cacgtctgag
2641 caggaggaga tgcgggcgtt cccgggaccc ctggccaaag acgacaccca taaggtggat
2701 gtcattaatt ttgcacagaa caaagctatg aaatgtttgc agaatgaaaa cttaattgac
2761 aaagagtctg caagtcttct ttggaatttt attgttctct tatgcagaca aaatgggacc
2821 gtggtaggga ccgacattgc ggagcttctg ttacgagacc acagaacagt gtggcttcct
2881 gggaagtcgc ccaatgaagc aaacctgatt gatttcacga atgaggcagt ggagcaggtg
2941 gaagaggagg agtctggtga ggcccagctc tctttcctca ctggtggtcc ggcggctgcc
3001 gccagctcgc tcgagagaga gaccgagagg ttcagggagc tgttgctgta tggccgtaag
3061 aaggatgctt tggagtctgc aatgaagaat ggcctgtggg gtcacgctct gctacttgca
3121 agtaagatgg acagccggac acacgcccga gtcatgacca ggtttgctaa cagcctccca
3181 atcaacgacc ctctgcagac agtctaccag ctcatgtccg gacggatgcc tgccgcgtcc
3241 acgtgctgtg gagacgagaa atggggagat tggaggccgc acctcgccat ggtcttgtcc
3301 aacttgaaca acaacatgga cgtcgagtcc aggacgatgg ctaccatggg cgacactctg
3361 gcttcaaggg gcctcttgga tgcggcccac ttctgctacc tcatggccca ggcgggattt
3421 ggtgtttaca cgaagaaaac tacaaagctt gtcttaatcg gatccaatca cagtttgcca
3481 ttcttaaagt tcgcaaccaa cgaagcaatc cagaggacgg aagcctatga gtacgcccag
3541 tccctgggtg ccgagacctg ccccctgcct agtttccagg tgtttaagtt catctactcc
3601 tgccgcctgg cggaaatggg gctggccacg caagccttcc actactgtga ggccatcgcg
3661 aagagcatcc tgacgcagcc gcacctgtat tccccggtgt tgatcagcca gcttgtgcag
3721 atggcttccc agttacgact cttcgatccc cagctgaaag agaagccaga agaggagtcc
3781 ttggccgcac ccacgtggct ggttcacctg cagcaggtgg agcggcagat taaggagggg
3841 gctggagtat ggcatcagga tggagccctc ccgcagcagt gtcctggcac tccgagttcc
3901 gagatggagc agttggacag gccaggactc agtcagccag gagccctggg gatcgccaac
3961 cctctgctgg cggtgcctgc accgagccct gagcactcga gcccgagcgt gcggctgctg
4021 ccctcagctc cgcagacgct ccctgacggc ccattggcca gtcctgccag agtgccgatg
4081 ttcccagtgc cactgccccc ggggcccctg gagccgggtc ctggctgtgt gaccccaggg
4141 cctgcacttg gcttcctgga gccctccggg cctggcctcc cacctggtgt gccacctctg
4201 caggaaagga gacacttgct ccaggaagcc aggagcccag acccagggat agtgccgcag
4261 gaggcgcctg ttggaaactc actttccgag ctaagcgaag aaaattttga tggaaaattt
4321 gctaatctga ccccctcgag gacggtgcca gactcggagg cccccccagg gtgggatcgt
4381 gccgactcgg gtcccacgca gccacctctg tctctctcac ccgctcccga aacaaagaga
4441 cccggacagg cagccaagaa agaaacgaag gaacctaaga agggtgaatc ctggttcttt
4501 cgttggctac ctggaaagaa aaagacagaa gcttatttgc cagatgacaa gaacaaatcg
4561 attgtttggg atgaaaagaa aaaccagtgg gtgaatttaa atgagccaga agaggagaag
4621 aaagccccgc ccccacctcc aacctcgatg cccaagactg tgcaagctgc cccgcctgcc
4681 ctcccagggc ctcctggagc ccccgtgaac atgtactcta gaagagcagc aggaaccaga
4741 gctcgctacg ttgacgtcct gaacccaagc gggacccagc ggagcgagcc ggctctcgct
4801 cctgcggact ttgtcgctcc actcgcgcca ctcccaattc cttctaactt gttcgtgcca
4861 accccagatg cagaagaacc acagcttcca gacgggactg gcagggaagg gcctgcagca
4921 gctaggggcc tggccaatcc agagcctgcc ccagagccca aggttttaag ctctgcagcg
4981 tcactccctg gctctgaact cccctcctcc aggcctgagg gttcccaggg aggagaggct
5041 cctggcgacc tccctgctgc agggggccct cccagcgggg ccatgccctt ctacaaccct
5101 gctcagctgg cacaggcctg cgccacctcc gggagctcaa ggctagggag gattggccag
5161 aggaagcacc tggtgctgaa ctaggcttgc cctgctgtga acttgcactt ggagccctga
5221 cgctgctgtt ctccccgaag aacccgaccg acctccgcga
//