LOCUS BC125018 5962 bp mRNA linear HUM 26-JUN-2007
DEFINITION Homo sapiens SEC16 homolog A (S. cerevisiae), mRNA (cDNA clone
IMAGE:40072120), partial cds.
ACCESSION BC125018
VERSION BC125018.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5962)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 5962)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-OCT-2006) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 18 Row: k Column: 21.
FEATURES Location/Qualifiers
source 1..5962
/db_xref="H-InvDB:HIT000388485"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:40072120"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_283"
/note="Vector: pCR-Blunt II-TOPO with reversed insert;
Clone identification sequence tag: NA"
gene <1..5962
/gene="SEC16A"
/gene_synonym="p250"
/gene_synonym="RP11-413M3.10"
/gene_synonym="SEC16L"
/db_xref="GeneID:9919"
/db_xref="HGNC:HGNC:29006"
CDS <1..5886
/gene="SEC16A"
/gene_synonym="p250"
/gene_synonym="RP11-413M3.10"
/gene_synonym="SEC16L"
/codon_start=1
/product="SEC16A protein"
/protein_id="AAI25019.1"
/db_xref="GeneID:9919"
/db_xref="HGNC:HGNC:29006"
/translation="MFFQGGETENEENLSSEKAGLSGQADFDDFCSSPGLGRPPAPTH
VGAGSLCQALLPGPSNEAAGDVWGDTASTGVPDASGSQYENVENLEFVQNQEVLPSEP
LNLDPSSPSDQFRYGPLPGPAVPRHGAVCHTGAPDATLHTVHPDSVSSSYSSRSHGRL
SGSARPQELVGTFIQQEVGKPEDEASGSFFKQIDSSPVGGETDETTVSQNYRGSVSQP
STPSPPKPTGIFQTSANSSFEPVKSHLVGVKPFEADRANVVGEVRETCVRQKQCRPAA
ALPDASPGNLEQPPDNMETLCAPQVCPLPLNSTTEAVHMLPHAGAPPLDTVYPAPEKR
PSARTQGPVKCESPATTLWAQSELPDFGGNVLLAPAAPALYVCAKPQPPVVQPPEEAM
SGQQSRNPSSAAPVQSRGGIGASENLENPPKMGEEEALQSQASSGYASLLSSPPTESL
QNPPVLIAQPDHSYNLAQPINFSVSLSNSHEKNQSWREALVGDRPAVSSWALGGDSGE
NTSLSGIPTSSVLSLSLPSSVAQSNFPQGSGASEMVSNQPANLLVQPPSQPVPENLVP
ESQKDRKAGSALPGFANSPAGSTSVVLVPPAHGTLVPDGNKANHSSHQEDTYGALDFT
LSRTLENPVNVYNPSHSDSLASQQSVASHPRQSGPGAPNLDRFYQQVTKDAQGQPGLE
RAQQELVPPQQQASPPQLPKAMFSELSNPESLPAQGQAQNSAQSPASLVLVDAGQQLP
PRPPQSSSVSLVSSGSGQAAVPSEQPWPQPVPALAPGPPPQDLAAYYYYRPLYDAYQP
QYSLPYPPEPGAASLYYQDVYSLYEPRYRPYDGAASAYAQNYRYPEPERPSSRASHSS
ERPPPRQGYPEGYYSSKSGWSSQSDYYASYYSSQYDYGDPGHWDRYHYSARVRDPRTY
DRRYWCDAEYDAYRREHSAFGDRPEKRDNNWRYDPRFTGSFDDDPDPHRDPYGEEVDR
RSVHSEHSARSLHSAHSLASRRSSLSSHSHQSQIYRSHNVAAGSYEAPLPPGSFHGDF
AYGTYRSNFSSGPGFPEYGYPADTVWPAMEQVSSRPTSPEKFSVPHVCARFGPGGQLI
KVIPNLPSEGQPALVEVHSMEALLQHTSEQEEMRAFPGPLAKDDTHKVDVINFAQNKA
MKCLQNENLIDKESASLLWNFIVLLCRQNGTVVGTDIAELLLRDHRTVWLPGKSPNEA
NLIDFTNEAVEQVEEEESGEAQLSFLTGGPAAAASSLERETERFRELLLYGRKKDALE
SAMKNGLWGHALLLASKMDSRTHARVMTRFANSLPINDPLQTVYQLMSGRMPAASTCC
GDEKWGDWRPHLAMVLSNLNNNMDVESRTMATMGDTLASRGLLDAAHFCYLMAQAGFG
VYTKKTTKLVLIGSNHSLPFLKFATNEAIQRTEAYEYAQSLGAETCPLPSFQVFKFIY
SCRLAEMGLATQAFHYCEAIAKSILTQPHLYSPVLISQLVQMASQLRLFDPQLKEKPE
EESLAAPTWLVHLQQVERQIKEGAGVWHQDGALPQQCPGTPSSEMEQLDRPGLSQPGA
LGIANPLLAVPAPSPEHSSPSVRLLPSAPQTLPDGPLASPARVPMFPVPLPPGPLEPG
PGCVTPGPALGFLEPSGPGLPPGVPPLQERRHLLQEARSPDPGIVPQEAPVGNSLSEL
SEENFDGKFANLTPSRTVPDSEAPPGWDRADSGPTQPPLSLSPAPETKRPGQAAKKET
KEPKKGESWFFRWLPGKKKTEAYLPDDKNKSIVWDEKKNQWVNLNEPEEEKKAPPPPP
TSMPKTVQAAPPAFPGPPGAPVNMYSRRAAGTRARYVDVLNPSGTQRSEPALAPADFV
APLAPLPIPSNLFVPTPVSSVRPQGRSGRNDGLLALSSPDAEEPQLPDGTGREGPAAA
RGLANPEPAPEPKAPGDLPAAGGPPSGAMPFYNPAQLAQACATSGSSRLGRIGQRKHL
VLN"
BASE COUNT 1338 a 1797 c 1632 g 1195 t
ORIGIN
1 atgtttttcc aagggggaga gacagaaaat gaggagaatc tctcatctga aaaagcaggc
61 ttatctggtc aagcggactt tgacgatttc tgctccagcc ctgggctagg ccgtccgccc
121 gcacctacac acgtgggggc aggcagcctc tgccaggccc ttctcccagg ccccagcaat
181 gaggctgctg gtgatgtgtg gggtgacaca gcgagcacag gggtgccgga tgccagcggc
241 tcgcagtatg agaatgttga gaacttagaa tttgttcaga atcaagaagt tctgccaagt
301 gagcccctca atttggaccc ttcctccccg agtgaccagt tcagatatgg gccccttcct
361 gggccagctg tgcccaggca tggtgctgtg tgccacaccg gagcccctga tgccacactg
421 catacagtgc accctgacag cgtgtcatcc agctatagca gcagaagcca cggaaggctc
481 tcaggctcag ccaggcccca ggagctggtt ggcacattca ttcagcaaga agttggaaaa
541 cccgaggatg aagcttcagg tagttttttt aagcaaatcg attcttctcc cgtaggaggt
601 gaaacagacg agaccactgt gagccagaat taccgtggca gcgtgtccca gccctcaacc
661 ccgagccccc cgaaacctac aggaatattt cagacaagtg caaatagttc tttcgaaccg
721 gtaaaatctc acttagttgg ggtaaaacca tttgaggcag atcgcgccaa cgtggttggt
781 gaagtaaggg agacctgtgt ccgccagaag cagtgcagac cagctgccgc cctgcccgat
841 gcttcccctg gcaacctgga gcagccacca gacaacatgg agaccctctg tgcaccccag
901 gtctgtcccc tgcctcttaa ctccaccacg gaagctgtgc acatgcttcc gcacgcaggg
961 gcaccgccct tggatactgt gtatccagca cccgagaaga ggccttcagc caggacccag
1021 gggcccgtga agtgtgagag cccagcaacg actctgtggg cgcaaagtga gctgccagat
1081 tttggaggca acgtccttct ggcccctgca gccccggcgc tttatgtgtg tgcaaaacct
1141 cagccacctg ttgttcagcc tccagaagag gcgatgtccg ggcagcagtc acggaaccca
1201 agctcggcgg ccccggtgca gagccgaggt ggcattggtg cttctgagaa ccttgagaat
1261 cctcccaaaa tgggagagga ggaggccctt cagtcccagg cgagttctgg ttatgcaagt
1321 ttattatcct caccgcccac tgagtctctg cagaatcctc cagtcttgat tgctcagcct
1381 gatcacagct ataatctggc tcagcccatt aacttttctg tgtccttatc gaactctcat
1441 gagaagaatc agtcctggag agaggctttg gtgggggata gacctgcagt cagcagttgg
1501 gctctcggtg gtgattctgg ggagaacact tctttgtctg ggattccaac cagctctgtc
1561 cttagcttgt ctctgcctag cagtgttgcc caaagtaatt ttccacaagg ttctggtgct
1621 tccgaaatgg tttctaatca gcctgctaat ttgctggttc aaccaccatc ccagccagtt
1681 ccagagaact tggttccaga aagtcaaaag gatcgtaagg caggaagtgc tcttcccgga
1741 tttgctaata gccctgctgg aagcacaagt gtggtgttag ttccacctgc acacggcacc
1801 ctggtgcctg atggtaataa ggcaaaccat tccagtcatc aggaagacac ttacggagcc
1861 ctagacttta ccttaagcag gactttggaa aatcctgtaa acgtgtacaa cccgtcccat
1921 tctgacagcc tcgcttctca gcaaagtgtt gccagtcatc ccagacaatc tgggcctggg
1981 gcgcctaacc ttgaccgttt ttatcagcag gtcacgaaag atgcccaggg ccagcctggc
2041 ctcgaaagag cccagcagga gctggtgcca ccccagcaac aggcttctcc cccacaacta
2101 cccaaagcca tgttttcgga gctgtcaaat ccagaaagtc tgcccgcaca gggacaggcc
2161 cagaactcag cacagtcacc agcaagtctg gttctggtcg acgcgggtca gcagctgccc
2221 cctcggcctc ctcagtcctc tagcgtgtct ctggtgtcca gtggctccgg ccaggcagct
2281 gtgccgtcag agcagccgtg gccacagcca gtgcctgcac ttgcccccgg cccaccgcct
2341 caggacctgg ccgcctacta ctactaccgg cctttgtacg atgcctacca gcctcagtac
2401 tctttgccgt acccaccgga gcctggcgca gcctccctct attaccagga tgtctacagc
2461 ctctatgagc ctcgatacag gccctatgat ggtgctgcgt ctgcttacgc ccagaactac
2521 cgctatcccg agcccgagcg gcccagctcc cgagccagcc actcctcgga acggccacct
2581 cccaggcaag gatatcctga aggatactat agttccaaaa gtggatggag cagtcagagc
2641 gattactatg caagctatta ctccagccag tacgattatg gagatccagg tcactgggat
2701 cgttaccact acagtgctag agtcagggac ccccgcacct atgaccggag gtattggtgt
2761 gatgcagagt atgacgcata caggagagag cactctgcct tcggggacag gcccgagaaa
2821 cgtgacaaca actggaggta cgatcctcgc ttcacgggga gttttgacga tgaccccgat
2881 ccgcacagag acccttatgg ggaagaggtg gaccggcgca gcgtccacag cgagcactcg
2941 gcacggagcc tgcacagcgc acacagcctg gccagccgcc gcagcagcct cagctcccac
3001 tcgcaccaga gtcagattta cagaagccac aatgtggctg ccggttccta cgaggccccg
3061 cttcctccag gctcctttca cggcgatttt gcctacggca cctaccgcag caatttcagc
3121 agtggccccg gcttcccaga gtatggctac cctgccgaca ccgtctggcc tgccatggag
3181 caagtttcat caagaccaac ttctcctgaa aaattttcag tgcctcatgt ctgtgccagg
3241 tttggccctg gcggtcagct tatcaaagtg attcccaatc tgccttcaga aggacagccg
3301 gccttggtgg aggtccacag catggaggcc ttgctgcagc acacgtctga gcaggaggag
3361 atgcgggcgt tcccgggacc cctggccaaa gacgacaccc ataaggtgga tgtcattaat
3421 tttgcacaga acaaagctat gaaatgtttg cagaatgaaa acttaattga caaagagtct
3481 gcaagtcttc tttggaattt tattgttctc ttatgcagac aaaatgggac cgtggtaggg
3541 accgacattg cggagcttct gttacgagac cacagaacag tgtggcttcc tgggaagtcg
3601 cccaatgaag caaacctgat tgatttcacg aatgaggcag tggagcaggt ggaagaggag
3661 gagtctggtg aggcccagct ctctttcctc actggtggtc cggcggctgc cgccagctcg
3721 ctcgagagag agaccgagag gttcagggag ctgttgctgt atggccgtaa gaaggatgct
3781 ttggagtctg caatgaagaa tggcctgtgg ggtcacgctc tgctacttgc aagtaagatg
3841 gacagccgga cacacgcccg agtcatgacc aggtttgcta acagcctccc aatcaacgac
3901 cctctgcaga cagtctacca gctcatgtcc ggacggatgc ctgccgcgtc cacgtgctgt
3961 ggagacgaga aatggggaga ttggaggccg cacctcgcca tggtcttgtc caacttgaac
4021 aacaacatgg acgtcgagtc caggacgatg gctaccatgg gcgacactct ggcttcaagg
4081 ggcctcttgg atgcggccca cttctgctac ctcatggccc aggcgggatt tggtgtttac
4141 acgaagaaaa ctacaaagct tgtcttaatc ggatccaatc acagtttgcc attcttaaag
4201 ttcgcaacca acgaagcaat ccagaggacg gaagcctatg agtacgccca gtccctgggt
4261 gccgagacct gccccctgcc tagtttccag gtgtttaagt tcatctactc ctgccgcctg
4321 gcggaaatgg ggctggccac gcaagccttc cactactgtg aggccatcgc gaagagcatc
4381 ctgacgcagc cgcacctgta ttccccggtg ttgatcagcc agcttgtgca gatggcttcc
4441 cagttacgac tcttcgatcc ccagctgaaa gagaagccag aagaggagtc cttggccgca
4501 cccacgtggc tggttcacct gcagcaggtg gagcggcaga ttaaggaggg ggctggagta
4561 tggcatcagg atggagccct cccgcagcag tgtcctggca ctccgagttc cgagatggag
4621 cagttggaca ggccaggact cagtcagcca ggagccctgg ggatcgccaa ccctctgctg
4681 gcggtgcctg caccgagccc tgagcactcg agcccgagcg tgcggctgct gccctcagct
4741 ccgcagacgc tccctgacgg cccattggcc agtcctgcca gagtgccgat gttcccagtg
4801 ccactgcccc cggggcccct ggagccgggt cctggctgtg tgaccccagg gcctgcactt
4861 ggcttcctgg agccctccgg gcctggcctc ccacctggtg tgccacctct gcaggaaagg
4921 agacacttgc tccaggaagc caggagccca gacccaggga tagtgccgca ggaggcgcct
4981 gttggaaact cactttccga gctaagcgaa gaaaattttg atggaaaatt tgctaatctg
5041 accccctcga ggacggtgcc agactcggag gcccccccag ggtgggatcg tgccgactcg
5101 ggtcccacgc agccacctct gtctctctca cccgctcccg aaacaaagag acccggacag
5161 gcagccaaga aagaaacgaa ggaacctaag aagggtgaat cctggttctt tcgttggcta
5221 cctggaaaga aaaagacaga agcttatttg ccagatgaca agaacaaatc gattgtttgg
5281 gatgaaaaga aaaaccagtg ggtgaattta aatgagccag aagaggagaa gaaagccccg
5341 cccccacctc caacctcgat gcccaagact gtgcaagctg ccccgcctgc cttcccaggg
5401 cctcctggag cccccgtgaa catgtactct agaagagcag caggaaccag agctcgctac
5461 gttgacgtcc tgaacccaag cgggacccag cggagcgagc cggctctcgc tcctgcggac
5521 tttgtcgctc cactcgcgcc actcccaatt ccttctaact tgttcgtgcc aaccccagtg
5581 tcttcagtga gaccccaggg acgttcggga cggaatgatg gcctcctcgc tctctcatcc
5641 ccagatgcag aagaaccaca gcttccagac gggactggca gggaagggcc tgcagcagct
5701 aggggcctgg ccaatccaga gcctgcccca gagcccaagg ctcctggcga cctccctgct
5761 gcagggggcc ctcccagcgg ggccatgccc ttctacaacc ctgctcagct ggcacaggcc
5821 tgcgccacct ccgggagctc aaggctaggg aggattggcc agaggaagca cctggtgctg
5881 aactaggctt gccctgctgt gaacttgcac ttggagccct gacgctgctg ttctccccga
5941 agaacccgac cgacctccgc ga
//