LOCUS       BC124756                2081 bp    mRNA    linear   VRT 09-JUN-2008
DEFINITION  Danio rerio nuclear receptor subfamily 5, group A, member 5, mRNA
            (cDNA clone MGC:153866 IMAGE:7996632), complete cds.
ACCESSION   BC124756
VERSION     BC124756.1
KEYWORDS    MGC.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE   1  (bases 1 to 2081)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   2  (bases 1 to 2081)
  CONSRTM   NIH MGC Project
  TITLE     Direct Submission
  JOURNAL   Submitted (03-OCT-2006) National Institutes of Health, Mammalian
            Gene Collection (MGC), Bethesda, MD 20892-2590, USA
  REMARK    NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT     Contact: MGC help desk
            Email: cgapbs-r@mail.nih.gov
            Tissue Procurement: Len Zon, Harvard
            cDNA Library Preparation: Open Biosystems
            cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
            DNA Sequencing by: Sequencing Group at the Stanford Human Genome
            Center, Stanford University School of Medicine, Stanford, CA  94305
            Web site:       http://www-shgc.stanford.edu
            Contact:  (Dickson, Mark) mcd@paxil.stanford.edu
            Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
            R. M.
            
            Clone distribution: MGC clone distribution information can be found
            through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
            Series: IRAK Plate: 286 Row: h Column: 7
            This clone was selected for full length sequencing because it
            passed the following selection criteria: matched mRNA gi: 47550852.
FEATURES             Location/Qualifiers
     source          1..2081
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /db_xref="taxon:7955"
                     /clone="MGC:153866 IMAGE:7996632"
                     /tissue_type="Whole, adult zebrafish"
                     /clone_lib="NIH_ZGC_7"
                     /lab_host="DH10B"
                     /note="Vector: pExpress1"
     gene            1..2081
                     /gene="nr5a5"
                     /gene_synonym="fd46g06"
                     /gene_synonym="ff1c"
                     /gene_synonym="wu:fd46g06"
                     /gene_synonym="zgc:111842"
                     /gene_synonym="zgc:153866"
                     /db_xref="GeneID:407626"
                     /db_xref="ZFIN:ZDB-GENE-030131-4652"
     CDS             172..1707
                     /gene="nr5a5"
                     /gene_synonym="fd46g06"
                     /gene_synonym="ff1c"
                     /gene_synonym="wu:fd46g06"
                     /gene_synonym="zgc:111842"
                     /gene_synonym="zgc:153866"
                     /codon_start=1
                     /product="nuclear receptor subfamily 5, group A, member 5"
                     /protein_id="AAI24757.1"
                     /db_xref="GeneID:407626"
                     /db_xref="ZFIN:ZDB-GENE-030131-4652"
                     /translation="MRHKRDRQHELKPDPESSATQEEGCPVCGDRVSGYHYGLLTCES
                     CKGFFKRSVQNNKRYTCAEAQNCPMDLAQRKRCPYCRFQKCVAVGMKKEAVRADRMRG
                     GRNKFGPLYRRDRQLKQQRGTYHQANIAPYRVKIEGPQQLVPALPHDFHVINPNPASL
                     GTDHYHPTQHFHPNMSQSEFPVLLDCTMPRDRTFSDPSLPIHTVCYPGIHGYTPDKRE
                     IPFNYNPASVTPPGPMSPTVLSTPAPTLTPASTPSSTPTPSQSLTPTSTTAPSSFFLN
                     QLLQAEPDEKQLCMRVLASLQREQACRGKHDRLNTFSIMCKMADQTLFGLVEWARNCE
                     LFKELKVDDQMVLLQSCWSELLVLDHLCRQVAYGRDGSICLITGQQIEASTILSQAGV
                     TLSSLVSRAQDLVTKLRSLQLDREEFVCLKYLVLFNPDVKSVQNRRQVEQTQERVNKA
                     LMDHTMQTHPGHSDKFGQLLLRLPEVRSISLQVEEYLYQRHLLGDLPCNSLLTEMLHA
                     KHT"
BASE COUNT          594 a          542 c          456 g          489 t
ORIGIN      
        1 gcctgcgcct gttttcctcc ctgtcctgaa tcccggaggc ccacacaggt atgaatgaca
       61 gcttacagta acccacacca ccccttctcc tatggaccat gaacatctca agctaccccc
      121 tggatccccc ccagccctcg gttcatctgg cggccgaata cacacaagac catgcgtcac
      181 aagagagacc gtcaacatga gttaaagcca gacccagaga gtagtgcgac tcaagaagag
      241 ggctgtcctg tgtgtggcga cagggtgtcc ggatatcact atggtctact tacttgtgag
      301 agttgcaagg gcttctttaa gcgctctgtg cagaacaaca agcgctatac atgtgcagag
      361 gcacagaact gccccatgga cctggcacag aggaaacgat gcccttactg ccgcttccag
      421 aaatgtgtag ctgtcggcat gaagaaagaa gctgttcgtg cagacaggat gagaggtggc
      481 agaaacaagt ttggaccttt ataccgacgg gacaggcaac tgaaacagca aagagggacc
      541 tatcaccagg caaacattgc cccatacaga gtcaaaattg agggaccaca acaattggtg
      601 cctgctttgc ctcatgattt tcatgtcatc aaccctaacc ctgcttctct tggcactgac
      661 cattaccacc caacccagca cttccaccct aatatgagcc agtctgaatt tccagtgctg
      721 ctggactgca ccatgcccag agaccgaaca ttttcagatc catccctacc tattcacaca
      781 gtgtgctatc caggcatcca cggatatact ccagacaaaa gagagatccc tttcaactac
      841 aaccctgctt ctgtgacgcc tcctggtcca atgtctccta cagttctctc cacacctgca
      901 cctactctca cgccagcctc aactccgagt tccaccccaa ctccatcaca gagcttgacc
      961 cccacctcaa ccacagcccc aagttccttt tttttaaacc agctcctgca agccgagcca
     1021 gatgagaagc aactctgcat gcgggtgtta gcaagcctcc agagagaaca ggcctgcaga
     1081 ggaaaacatg accgcctcaa caccttcagc atcatgtgca aaatggctga ccagacttta
     1141 ttcggattgg tggagtgggc aaggaactgt gaattattta aggagcttaa ggtggatgat
     1201 caaatggtgt tactgcagag ctgctggagt gagcttcttg tcctggatca cttgtgcagg
     1261 caagtggctt atgggagaga tggcagcatc tgtctgatta caggacaaca gattgaagca
     1321 tcaaccattc tcagtcaggc tggagtaacc ctcagtagtc tggtgtctag agcccaggac
     1381 cttgtcacca agcttagatc actacagctg gacagagagg agtttgtgtg tctaaaatat
     1441 ctggttctct tcaatccaga tgttaaatca gtacagaacc gaaggcaggt agaacaaaca
     1501 caagagcgtg taaacaaggc tctgatggac cacactatgc aaacccaccc aggtcattct
     1561 gacaagttcg gacagctgct gctccgtctg ccagaggtgc ggagcatcag cctgcaggtg
     1621 gaggaatacc tgtatcagcg ccacctgctg ggagatcttc cctgcaactc actgctgact
     1681 gaaatgcttc atgccaagca cacatgagat catcgcaatg cttgatgttg ggaatgcttt
     1741 tgtatgtttg accttgggat ctaatctttt gagctttgaa caagtcgctc atttaatcgc
     1801 tggctggcag tgatagtcca agcaagagga acaatatcta gtattgttga tgtatgagat
     1861 gtaaagcaca tactcattta actactcatc ttacagttac ggatcatgtc tggtcaagaa
     1921 gaatgtgccg ttttaacttg tattaaagca caaatttcta acctctctaa atcacagatg
     1981 cccatctcat atcaataatg tcaaattgtt tacagaattg gagttgtaat taaagtgtct
     2041 ctgtatacaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa a
//