LOCUS BC124756 2081 bp mRNA linear VRT 09-JUN-2008 DEFINITION Danio rerio nuclear receptor subfamily 5, group A, member 5, mRNA (cDNA clone MGC:153866 IMAGE:7996632), complete cds. ACCESSION BC124756 VERSION BC124756.1 KEYWORDS MGC. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE 1 (bases 1 to 2081) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2081) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (03-OCT-2006) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Len Zon, Harvard cDNA Library Preparation: Open Biosystems cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 286 Row: h Column: 7 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 47550852. FEATURES Location/Qualifiers source 1..2081 /organism="Danio rerio" /mol_type="mRNA" /db_xref="taxon:7955" /clone="MGC:153866 IMAGE:7996632" /tissue_type="Whole, adult zebrafish" /clone_lib="NIH_ZGC_7" /lab_host="DH10B" /note="Vector: pExpress1" gene 1..2081 /gene="nr5a5" /gene_synonym="fd46g06" /gene_synonym="ff1c" /gene_synonym="wu:fd46g06" /gene_synonym="zgc:111842" /gene_synonym="zgc:153866" /db_xref="GeneID:407626" /db_xref="ZFIN:ZDB-GENE-030131-4652" CDS 172..1707 /gene="nr5a5" /gene_synonym="fd46g06" /gene_synonym="ff1c" /gene_synonym="wu:fd46g06" /gene_synonym="zgc:111842" /gene_synonym="zgc:153866" /codon_start=1 /product="nuclear receptor subfamily 5, group A, member 5" /protein_id="AAI24757.1" /db_xref="GeneID:407626" /db_xref="ZFIN:ZDB-GENE-030131-4652" /translation="MRHKRDRQHELKPDPESSATQEEGCPVCGDRVSGYHYGLLTCES CKGFFKRSVQNNKRYTCAEAQNCPMDLAQRKRCPYCRFQKCVAVGMKKEAVRADRMRG GRNKFGPLYRRDRQLKQQRGTYHQANIAPYRVKIEGPQQLVPALPHDFHVINPNPASL GTDHYHPTQHFHPNMSQSEFPVLLDCTMPRDRTFSDPSLPIHTVCYPGIHGYTPDKRE IPFNYNPASVTPPGPMSPTVLSTPAPTLTPASTPSSTPTPSQSLTPTSTTAPSSFFLN QLLQAEPDEKQLCMRVLASLQREQACRGKHDRLNTFSIMCKMADQTLFGLVEWARNCE LFKELKVDDQMVLLQSCWSELLVLDHLCRQVAYGRDGSICLITGQQIEASTILSQAGV TLSSLVSRAQDLVTKLRSLQLDREEFVCLKYLVLFNPDVKSVQNRRQVEQTQERVNKA LMDHTMQTHPGHSDKFGQLLLRLPEVRSISLQVEEYLYQRHLLGDLPCNSLLTEMLHA KHT" BASE COUNT 594 a 542 c 456 g 489 t ORIGIN 1 gcctgcgcct gttttcctcc ctgtcctgaa tcccggaggc ccacacaggt atgaatgaca 61 gcttacagta acccacacca ccccttctcc tatggaccat gaacatctca agctaccccc 121 tggatccccc ccagccctcg gttcatctgg cggccgaata cacacaagac catgcgtcac 181 aagagagacc gtcaacatga gttaaagcca gacccagaga gtagtgcgac tcaagaagag 241 ggctgtcctg tgtgtggcga cagggtgtcc ggatatcact atggtctact tacttgtgag 301 agttgcaagg gcttctttaa gcgctctgtg cagaacaaca agcgctatac atgtgcagag 361 gcacagaact gccccatgga cctggcacag aggaaacgat gcccttactg ccgcttccag 421 aaatgtgtag ctgtcggcat gaagaaagaa gctgttcgtg cagacaggat gagaggtggc 481 agaaacaagt ttggaccttt ataccgacgg gacaggcaac tgaaacagca aagagggacc 541 tatcaccagg caaacattgc cccatacaga gtcaaaattg agggaccaca acaattggtg 601 cctgctttgc ctcatgattt tcatgtcatc aaccctaacc ctgcttctct tggcactgac 661 cattaccacc caacccagca cttccaccct aatatgagcc agtctgaatt tccagtgctg 721 ctggactgca ccatgcccag agaccgaaca ttttcagatc catccctacc tattcacaca 781 gtgtgctatc caggcatcca cggatatact ccagacaaaa gagagatccc tttcaactac 841 aaccctgctt ctgtgacgcc tcctggtcca atgtctccta cagttctctc cacacctgca 901 cctactctca cgccagcctc aactccgagt tccaccccaa ctccatcaca gagcttgacc 961 cccacctcaa ccacagcccc aagttccttt tttttaaacc agctcctgca agccgagcca 1021 gatgagaagc aactctgcat gcgggtgtta gcaagcctcc agagagaaca ggcctgcaga 1081 ggaaaacatg accgcctcaa caccttcagc atcatgtgca aaatggctga ccagacttta 1141 ttcggattgg tggagtgggc aaggaactgt gaattattta aggagcttaa ggtggatgat 1201 caaatggtgt tactgcagag ctgctggagt gagcttcttg tcctggatca cttgtgcagg 1261 caagtggctt atgggagaga tggcagcatc tgtctgatta caggacaaca gattgaagca 1321 tcaaccattc tcagtcaggc tggagtaacc ctcagtagtc tggtgtctag agcccaggac 1381 cttgtcacca agcttagatc actacagctg gacagagagg agtttgtgtg tctaaaatat 1441 ctggttctct tcaatccaga tgttaaatca gtacagaacc gaaggcaggt agaacaaaca 1501 caagagcgtg taaacaaggc tctgatggac cacactatgc aaacccaccc aggtcattct 1561 gacaagttcg gacagctgct gctccgtctg ccagaggtgc ggagcatcag cctgcaggtg 1621 gaggaatacc tgtatcagcg ccacctgctg ggagatcttc cctgcaactc actgctgact 1681 gaaatgcttc atgccaagca cacatgagat catcgcaatg cttgatgttg ggaatgcttt 1741 tgtatgtttg accttgggat ctaatctttt gagctttgaa caagtcgctc atttaatcgc 1801 tggctggcag tgatagtcca agcaagagga acaatatcta gtattgttga tgtatgagat 1861 gtaaagcaca tactcattta actactcatc ttacagttac ggatcatgtc tggtcaagaa 1921 gaatgtgccg ttttaacttg tattaaagca caaatttcta acctctctaa atcacagatg 1981 cccatctcat atcaataatg tcaaattgtt tacagaattg gagttgtaat taaagtgtct 2041 ctgtatacaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa a //