LOCUS BC121037 2133 bp mRNA linear HUM 04-OCT-2006
DEFINITION Homo sapiens PR domain containing 5, mRNA (cDNA clone MGC:149729
IMAGE:40117856), complete cds.
ACCESSION BC121037
VERSION BC121037.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2133)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2133)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-AUG-2006) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 27 Row: j Column: 23.
FEATURES Location/Qualifiers
source 1..2133
/db_xref="H-InvDB:HIT000388234"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:149729 IMAGE:40117856"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_282"
/note="Vector: pCR-Blunt II-TOPO; Clone identification
sequence tag: NA"
gene 1..2133
/gene="PRDM5"
/gene_synonym="PFM2"
/db_xref="GeneID:11107"
/db_xref="HGNC:HGNC:9349"
CDS 46..1845
/gene="PRDM5"
/gene_synonym="PFM2"
/codon_start=1
/product="PRDM5 protein"
/protein_id="AAI21038.1"
/db_xref="GeneID:11107"
/db_xref="HGNC:HGNC:9349"
/translation="MLGMYVPDRFSLKSSRVQDGMGLYTARRVRKGEKFGPFAGEKRM
PEDLDENMDYRLMWEVRGSKGEVLYILDATNPRHSNWLRFVHEAPSQEQKNLAAIQEG
ENIFYLAVEDIETDTELLIGYLDSDMEAEEEEQQIMTVIKEGEVENSRRQSTAGRKDR
LGCKEDYACPQCESSFTSEDILAEHLQTLHQKPTEEKEFKCKNCGKKFPVKQALQRHF
EQHQETCRGDARFVCKADSCGKRLKSKDALKRHQENVHTGDPKKKLICSVCNKKCSSA
SSLQEHRKIHEIFDCQECMKKFISANQLKRHMITHSEKRPYNCEICNKSFKRLDQVGA
HKVIHSEDKPYKCKLCGKGFAHRNVYKNHKKTHSEERPFQCEECKALFRTPFSLQRHL
LIHNSERTFKCHHCDATFKRKDTLNVHVQVVHERHKKYRCELCNKAFVTPSVLRSHKK
THTGEKEKICPYCGQKFASSGTLRVHIRSHTGERPYQCPYCEKGFSKNDGLKMHIRTH
TREKPYKCSECSKAFSQKRGLDEHKRTHTGEKPFQCDVCDLAFSLKKMLIRHKMTHNP
NRPLAECQFCHKKFTRNDYLKVHMDNIHGVADS"
BASE COUNT 693 a 418 c 521 g 501 t
ORIGIN
1 taagcgccgg tgttgagaga ggcggcggcc gccgcgcccg ggaaaatgct gggcatgtac
61 gtgccggaca ggttctccct gaagtcctcc cgggttcagg acggcatggg gctctacacg
121 gcccgcagag tgcgaaaggg tgaaaagttc ggaccctttg ctggagagaa gagaatgcct
181 gaagacttgg atgaaaatat ggattacagg ttgatgtggg aggttcgtgg gagtaaggga
241 gaagttttgt acattttgga tgctaccaac ccacggcact ccaactggct tcgcttcgtt
301 catgaggcac catctcagga gcagaagaac ttggctgcca ttcaagaagg agaaaacatt
361 ttctatttgg cagttgaaga tatagaaaca gacacggagc ttctgattgg ctacctggat
421 agtgacatgg aggctgagga ggaagaacag caaattatga cagtcatcaa agaaggggaa
481 gttgaaaatt ctagaagaca atcaacagcg ggcagaaaag atcgccttgg ctgtaaagag
541 gactatgctt gtcctcaatg tgaatcgagt tttaccagtg aggatattct tgctgagcat
601 ctccagacat tgcaccagaa acccacagag gagaaagaat ttaagtgcaa gaactgtggg
661 aagaaattcc cagttaagca ggctttgcaa agacattttg agcagcacca ggagacttgc
721 cggggggatg ccaggtttgt gtgcaaggct gacagctgtg gaaagaggct gaagagcaag
781 gatgccctga aaagacacca ggaaaatgtc cacactggag atcctaagaa aaagcttata
841 tgttcagtgt gcaataaaaa gtgttcttca gcatcaagcc tacaggaaca tagaaagatt
901 catgagatat ttgattgtca agaatgtatg aagaaattta tttcagctaa tcagctaaaa
961 cgtcatatga tcacccactc agaaaaacga ccctataatt gcgagatttg taataagtct
1021 ttcaagaggc ttgatcaagt gggtgctcac aaagtaatac acagcgaaga caaaccttac
1081 aaatgcaaac tttgtggaaa gggatttgcc cacagaaatg tttacaagaa tcataagaag
1141 acccactctg aggagagacc gttccaatgt gaagaatgta aagctctgtt ccggacccca
1201 ttttctttac agagacacct gctaatacat aacagtgaga ggactttcaa gtgccatcac
1261 tgcgatgcta cctttaagag gaaggataca ttaaatgttc atgtccaggt ggttcatgaa
1321 agacacaaga agtataggtg tgagctatgt aataaggcct ttgttacacc ttcagtgctt
1381 agaagtcata agaaaacaca tacaggagaa aaggagaaaa tctgtccata ttgtggccag
1441 aaatttgcca gcagtggtac actcagagtt catatccgga gccacacagg tgagcgtccc
1501 tatcaatgtc cttactgtga aaaaggattc agtaaaaatg atggactgaa gatgcacatt
1561 cgtactcaca ccagggagaa gccgtacaag tgctcagagt gcagcaaggc cttcagccag
1621 aagcgaggcc tggatgagca caagaggacg cacactggag aaaagccttt tcagtgtgat
1681 gtttgtgatt tggcttttag cctgaagaaa atgctgattc gacacaagat gactcataat
1741 cccaatcgtc ccctggcaga atgccagttt tgccataaga agtttacaag gaatgactac
1801 ctcaaagtgc acatggacaa tatccatggt gtagctgaca gctaataggg gctgtaaagg
1861 aattaaacta ttcagaaggg ctcctaatat gaatcccaga tttttatcac ctgatcagca
1921 taacagaagt agccaaaagt gacttactgg tctcatagtt cttatttgcc tacatttaga
1981 gtctgtagat gcatatgcaa ccaaaaaaaa gtcttacttt taacaagaaa tggtataaat
2041 gaaaaaaaaa tacaactcca tagccttgca aaatgcaact tgtgctctgt cttataaaaa
2101 tggagaaagg agtcatgact ctctttcttg gcc
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