LOCUS BC120967 996 bp mRNA linear HUM 04-OCT-2006
DEFINITION Homo sapiens SET domain containing 3, mRNA (cDNA clone
IMAGE:40115353), complete cds.
ACCESSION BC120967
VERSION BC120967.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 996)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 996)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-AUG-2006) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 29 Row: c Column: 5
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..996
/db_xref="H-InvDB:HIT000388164"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:40115353"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_283"
/note="Vector: pCR-Blunt II-TOPO with reversed insert;
Clone identification sequence tag: AATAAA sequenced from
the forward primer"
gene 1..996
/gene="SETD3"
/gene_synonym="FLJ23027"
/db_xref="GeneID:84193"
/db_xref="HGNC:HGNC:20493"
CDS 26..916
/gene="SETD3"
/gene_synonym="FLJ23027"
/codon_start=1
/product="SET domain containing 3"
/protein_id="AAI20968.1"
/db_xref="GeneID:84193"
/db_xref="HGNC:HGNC:20493"
/translation="MGKKSRVKTQKSGTGATATVSPKEILNLTSELLQKCSSPAPGPG
KEWEEYVQIRTLVEKIRKKQKGLSVTFDGKREDYFPDLMKWASENGASVEGFEMVNFK
EEGFGLRATRDIKAEELFLWVPRKLLMTVESAKNSVLGPLYSQDRILQAMGNIALAFH
LLCERASPNSFWQPYIQTLPSEYDTPLYFEEDEVRYLQSTQAIHDVFSQYKNTARQYA
YFYKVIQTHPHANKLPLKDSFTYEDYRWAVSSVMTRQNQIPTEDGSRVTLALIPLWDM
CNHTNGLTPEDSFALAVASA"
BASE COUNT 283 a 240 c 229 g 244 t
ORIGIN
1 ctaggggaag cgggcagtca gaaaaatggg taagaagagt cgagtaaaaa ctcagaaatc
61 tggcactggt gctacagcaa ctgtgtcacc aaaggaaatc ttgaacctga ccagtgagct
121 gctgcagaaa tgcagcagtc cggcgcctgg cccaggaaaa gagtgggaag agtatgtgca
181 gatccggact ctggttgaga aaatacggaa aaagcaaaaa ggtctgtccg ttacttttga
241 tggaaaaaga gaagattact ttcctgatct aatgaaatgg gcctctgaaa atggggcttc
301 tgtcgagggt tttgaaatgg ttaacttcaa agaagagggc tttggtttga gagcaacaag
361 agatatcaag gcagaagaat tgtttttatg ggttccacga aaattgctaa tgactgttga
421 atctgctaaa aattcagtgt tggggccctt atattctcaa gaccgaatcc ttcaagccat
481 gggaaacatc gcactggcct ttcatttgct gtgtgagcga gccagcccta actccttctg
541 gcagccctat attcaaaccc tccccagtga atatgacact cctctctact ttgaagaaga
601 tgaagttcgg tatcttcagt ccacacaagc tatacatgat gtcttcagcc agtataaaaa
661 cacagctcga cagtacgcct acttctataa agtcatccag acccatcctc atgccaacaa
721 actacccttg aaggattctt tcacttacga ggactacagg tgggcagtct cttctgttat
781 gacgaggcaa aaccaaattc ccacagagga tggttcccgc gtgaccctgg ctctgattcc
841 tttatgggat atgtgtaacc acaccaacgg cctgacacca gaagattcct tcgctcttgc
901 tgtcgcctct gcctaagacc ctccattcct taggcactta cgggactcac tcatagacct
961 cctccagcgt ggctgccctg agcaccctat gtggaa
//