LOCUS BC119743 641 bp mRNA linear HUM 19-MAR-2007 DEFINITION Homo sapiens LIM homeobox transcription factor 1, alpha, mRNA (cDNA clone IMAGE:40119206), complete cds. ACCESSION BC119743 VERSION BC119743.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 641) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 641) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (11-JUL-2006) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Baylor Human Genome Sequencing Center cDNA Library Preparation: Baylor Human Genome Sequencing Center cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAM Plate: 27 Row: o Column: 15 This clone has the following problem: The cds is short compared to the longest cds in the locus. FEATURES Location/Qualifiers source 1..641 /db_xref="H-InvDB:HIT000388062" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:40119206" /tissue_type="PCR rescued clones" /clone_lib="NIH_MGC_283" /note="Vector: pCR-Blunt II-TOPO with reversed insert; Clone identification sequence tag: CATTCAT sequenced from the forward primer" gene 1..641 /gene="LMX1A" /gene_synonym="LMX-1" /gene_synonym="LMX1.1" /db_xref="GeneID:4009" /db_xref="HGNC:HGNC:6653" /db_xref="MIM:600298" CDS 124..525 /gene="LMX1A" /gene_synonym="LMX-1" /gene_synonym="LMX1.1" /codon_start=1 /product="LIM homeobox transcription factor 1, alpha" /protein_id="AAI19744.1" /db_xref="GeneID:4009" /db_xref="HGNC:HGNC:6653" /db_xref="MIM:600298" /translation="MKKLARRQQQQQQDQQNTQRLSSAQTNGGGSAGMEGIMNPYTAL PTPQQLLAIEQSVYSSDPFRQGLTPPQMPGDHMHPYGAEPLFHDLDSDDTSLSNLGDC FLATSEAGPLQSRVGNPIDHLYSMQNSYFTS" BASE COUNT 151 a 181 c 177 g 132 t ORIGIN 1 tgtccaagcg actgctccag ttgtcaccat gtttccagtc accaggtgag agagactctg 61 gctgcagaga cagggctgag tgtccgtgtc gtccaggtgt ggttccaaaa ccagagagcg 121 aagatgaaga agctggccag gcgacagcag cagcagcagc aagatcagca gaacacccag 181 aggctgagct ctgctcagac aaacggtggt gggagtgctg ggatggaagg aatcatgaac 241 ccctacacgg ctctgcccac cccacagcag ctcctggcca tcgagcagag tgtctacagc 301 tcagatccct tccgacaggg tctcacccca ccccagatgc ctggagacca catgcaccct 361 tatggtgccg agcccctttt ccatgacctg gatagcgacg acacctccct cagtaacctg 421 ggtgactgtt tcctagcaac ctcagaagct gggcctctgc agtccagagt gggaaacccc 481 attgaccatc tgtactccat gcagaattct tacttcacat cttgagtctt cccctagagt 541 tctgtgacta ggctcccata tggaacaacc atattctttg aggggtcact ggctttagga 601 cagggaggcc agggaagagg tgggttgggg agggagtttt t //