LOCUS       BC119743                 641 bp    mRNA    linear   HUM 19-MAR-2007
DEFINITION  Homo sapiens LIM homeobox transcription factor 1, alpha, mRNA (cDNA
            clone IMAGE:40119206), complete cds.
ACCESSION   BC119743
VERSION     BC119743.1
KEYWORDS    .
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 641)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   2  (bases 1 to 641)
  CONSRTM   NIH MGC Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-JUL-2006) National Institutes of Health, Mammalian
            Gene Collection (MGC), Bethesda, MD 20892-2590, USA
  REMARK    NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT     Contact: MGC help desk
            Email: cgapbs-r@mail.nih.gov
            Tissue Procurement: Baylor Human Genome Sequencing Center
            cDNA Library Preparation: Baylor Human Genome Sequencing Center
            cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
            DNA Sequencing by: Sequencing Group at the Stanford Human Genome
            Center, Stanford University School of Medicine, Stanford, CA  94305
            Web site:       http://www-shgc.stanford.edu
            Contact:  (Dickson, Mark) mcd@paxil.stanford.edu
            Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
            R. M.
            
            Clone distribution: MGC clone distribution information can be found
            through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
            Series: IRAM Plate: 27 Row: o Column: 15
            This clone has the following problem: The cds is short compared to
            the longest cds in the locus.
FEATURES             Location/Qualifiers
     source          1..641
                     /db_xref="H-InvDB:HIT000388062"
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /clone="IMAGE:40119206"
                     /tissue_type="PCR rescued clones"
                     /clone_lib="NIH_MGC_283"
                     /note="Vector: pCR-Blunt II-TOPO with reversed insert;
                     Clone identification sequence tag: CATTCAT sequenced from
                     the forward primer"
     gene            1..641
                     /gene="LMX1A"
                     /gene_synonym="LMX-1"
                     /gene_synonym="LMX1.1"
                     /db_xref="GeneID:4009"
                     /db_xref="HGNC:HGNC:6653"
                     /db_xref="MIM:600298"
     CDS             124..525
                     /gene="LMX1A"
                     /gene_synonym="LMX-1"
                     /gene_synonym="LMX1.1"
                     /codon_start=1
                     /product="LIM homeobox transcription factor 1, alpha"
                     /protein_id="AAI19744.1"
                     /db_xref="GeneID:4009"
                     /db_xref="HGNC:HGNC:6653"
                     /db_xref="MIM:600298"
                     /translation="MKKLARRQQQQQQDQQNTQRLSSAQTNGGGSAGMEGIMNPYTAL
                     PTPQQLLAIEQSVYSSDPFRQGLTPPQMPGDHMHPYGAEPLFHDLDSDDTSLSNLGDC
                     FLATSEAGPLQSRVGNPIDHLYSMQNSYFTS"
BASE COUNT          151 a          181 c          177 g          132 t
ORIGIN      
        1 tgtccaagcg actgctccag ttgtcaccat gtttccagtc accaggtgag agagactctg
       61 gctgcagaga cagggctgag tgtccgtgtc gtccaggtgt ggttccaaaa ccagagagcg
      121 aagatgaaga agctggccag gcgacagcag cagcagcagc aagatcagca gaacacccag
      181 aggctgagct ctgctcagac aaacggtggt gggagtgctg ggatggaagg aatcatgaac
      241 ccctacacgg ctctgcccac cccacagcag ctcctggcca tcgagcagag tgtctacagc
      301 tcagatccct tccgacaggg tctcacccca ccccagatgc ctggagacca catgcaccct
      361 tatggtgccg agcccctttt ccatgacctg gatagcgacg acacctccct cagtaacctg
      421 ggtgactgtt tcctagcaac ctcagaagct gggcctctgc agtccagagt gggaaacccc
      481 attgaccatc tgtactccat gcagaattct tacttcacat cttgagtctt cccctagagt
      541 tctgtgacta ggctcccata tggaacaacc atattctttg aggggtcact ggctttagga
      601 cagggaggcc agggaagagg tgggttgggg agggagtttt t
//