LOCUS BC118572 3369 bp mRNA linear HUM 01-JUL-2006
DEFINITION Homo sapiens OTU domain containing 4, mRNA (cDNA clone MGC:126484
IMAGE:40036249), complete cds.
ACCESSION BC118572
VERSION BC118572.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3369)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3369)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (30-JUN-2006) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 26 Row: g Column: 3.
FEATURES Location/Qualifiers
source 1..3369
/db_xref="H-InvDB:HIT000387856"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:126484 IMAGE:40036249"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_283"
/note="Vector: pCR-Blunt II-TOPO with reversed insert;
Clone identification sequence tag: GATTGGAG"
gene 1..3369
/gene="OTUD4"
/gene_synonym="DKFZp434I0721"
/gene_synonym="HIN1"
/gene_synonym="HSHIN1"
/gene_synonym="KIAA1046"
/db_xref="GeneID:54726"
/db_xref="HGNC:HGNC:24949"
CDS 33..3182
/gene="OTUD4"
/gene_synonym="DKFZp434I0721"
/gene_synonym="HIN1"
/gene_synonym="HSHIN1"
/gene_synonym="KIAA1046"
/codon_start=1
/product="OTU domain containing 4"
/protein_id="AAI18573.1"
/db_xref="GeneID:54726"
/db_xref="HGNC:HGNC:24949"
/translation="MACIHYLRENREKFEAFIEGSFEEYLKRLENPQEWVGQVEISAL
SLMYRKDFIIYREPNVSPSQVTENNFPEKVLLCFSNGNHYDIVYPIKYKESSAMCQSL
LYELLYEKVFKTDVSKIVMELDTLEVADEDNSEISDSEDDSCKSKTAAAAADVNGFKP
LSGNEQLKNNGNSTSLPLSRKVLKSLNPAVYRNVEYEIWLKSKQAQQKRDYSIAAGLQ
YEVGDKCQVRLDHNGKFLNADVQGIHSENGPVLVEELGKKHTSKNLKAPPPESWNTVS
GKKMKKPSTSGQNFHSDVDYRGPKNPSKPIKAPSALPPRLQHPSGVRQHAFSSHSSGS
QSQKFSSEHKNLSRTPSQIIRKPDRERVEDFDHTSRESNYFGLSPEERREKQAIEESR
LLYEIQNRDEQAFPALSSSSVNQSASQSSNPCVQRKSSHVGDRKGSRRRMDTEERKDK
DSIHGHSQLDKRPEPSTLENITDDKYATVSSPSKSKKLECPSPAEQKPAEHVSLSNPA
PLLVSPEVHLTPAVPSLPATVPAWPSEPTTFGPTGVPAPIPVLSVTQTLTTGPDSAVS
QAHLTPSPVPVSIQAVNQPLMPLPQTLSLYQDPLYPGFPCNEKGDRAIVPPYSLCQTG
EDLPKDKNILRFFFNLGVKAYSCPMWAPHSYLYPLHQAYLAACRMYPKVPVPVYPHNP
WFQEAPAAQNESDCTCTDAHFPMQTEASVNGQMPQPEIGPPTFSSPLVIPPSQVSESH
GQLSYQADLESETPGQLLHADYEESLSGKNMFPQPSFGPNPFLGPVPIAPPFFPHVWY
GYPFQGFIENPVMRQNIVLPSDEKGELDLSLENLDLSKDCGSVSTVDEFPEARGEHVH
SLPEASVSSKPDEGRTEQSSQTRKADTALASIPPVAEGKAHPPTQILNRERETVPVEL
EPKRTIQSLKEKTEKVKDPKTAADVVSPGANSVDSRVQRPKEESSEDENEVSNILRSG
RSKQFYNQTYGSRKYKSDWGYSGRGGYQHVRSEESWKGQPSRSRDEGYQYHRNVRGRP
FRGDRRRSGMGDGHRGQHT"
BASE COUNT 1025 a 727 c 752 g 865 t
ORIGIN
1 tgcactctca gtctcgccat gttgaagtca gaatggcctg tattcactat cttcgagaga
61 acagagagaa atttgaagcg tttatagaag gatcatttga agaatattta aagcgtttgg
121 aaaatccaca ggaatgggta ggacaagtgg aaataagtgc cctttctctt atgtacagga
181 aagattttat aatttatcgg gaaccaaatg tttctccttc acaagtaaca gaaaataatt
241 ttcctgaaaa ggtgttactg tgtttttcaa atggaaatca ttatgatatt gtgtatccca
301 taaagtataa agaaagctct gctatgtgtc agtctctcct ttatgaattg ctgtatgaga
361 aggtatttaa aactgatgtt agtaaaattg tgatggaact agacacgttg gaagtagctg
421 atgaagataa cagtgaaata tcagattcag aggatgacag ttgcaagagt aagactgctg
481 ctgctgctgc tgatgtgaat ggatttaaac ctttgtcagg caatgagcag ctgaagaaca
541 atgggaactc tactagcctg cctttgtcta gaaaggttct taagtcactc aatcctgcag
601 tctatagaaa tgtggaatat gaaatttggc tgaagtctaa acaagctcag caaaaacgtg
661 attattccat tgctgctggc ttacaatatg aagttggaga caaatgtcaa gttaggttgg
721 atcacaatgg aaaatttttg aatgcagatg ttcaaggaat tcattctgag aatggaccag
781 ttttggttga agaactggga aagaagcaca catcaaagaa cctcaaggca cctcccccag
841 aaagctggaa cacagtgtca gggaagaaga tgaaaaaacc ttccacttct ggacaaaatt
901 tccattctga tgtggattac agagggccaa agaatccaag caagccaata aaagccccat
961 cagcactacc tcctcgactg cagcatcctt caggagtaag acaacatgcg ttctctagtc
1021 attcttcagg gtcacagtct cagaaattct ccagtgagca caaaaatctt agccggacac
1081 cttcacagat cataagaaaa cctgatcgtg aaagagttga ggattttgat cacacaagtc
1141 gagaatctaa ctatttcggc ctttccccag aagagcgcag agagaagcaa gctatagaag
1201 aatcccgttt actctatgag attcagaaca gagatgaaca ggctttccca gccctttcca
1261 gctcatcagt caatcagtca gcttctcaga gtagcaatcc atgtgtccag agaaaatcat
1321 cacatgtagg tgatagaaaa ggaagcaggc ggagaatgga tacagaagaa cgaaaagaca
1381 aagactctat tcatggacat agtcagttgg ataaaagacc cgaaccaagc acattggaga
1441 atattactga tgataaatat gcaacagttt catcaccatc aaagtcaaag aagttagagt
1501 gcccttctcc tgcggaacaa aagccagcag aacatgtgtc tttgtcaaat ccagctcccc
1561 ttctagtttc tccagaggta catctaactc ctgcggtgcc ttctttacca gccactgtgc
1621 cagcctggcc aagtgaacct acaacttttg gaccaacagg tgtccctgct ccaattcccg
1681 ttttgtcagt gacacagact ttgaccactg gacctgattc agctgtatcc caagctcatt
1741 taacaccctc tccagttcct gtgtcaatac aggcagttaa ccagcccttg atgcctttgc
1801 ctcagacatt gagcctttat caagacccac tctatcctgg gtttccttgt aatgaaaagg
1861 gagatcgagc cattgtacca ccttattcac tgtgtcagac tggggaggac ctacctaaag
1921 ataagaatat tcttcgattc ttcttcaatc ttggtgtgaa ggcatacagt tgtcctatgt
1981 gggccccaca ttcttacctg taccctctgc accaggccta cctggcagcc tgcaggatgt
2041 acccaaaggt ccctgtccct gtttatcctc ataatccctg gttccaagag gctcctgctg
2101 ctcagaatga aagtgattgt acctgtactg atgcccactt tcctatgcag actgaggcca
2161 gtgttaatgg tcaaatgcca cagccagaga ttggaccgcc gacattttct tcacctctgg
2221 ttatccctcc atctcaggtg tctgaaagtc atggacaatt gtcttaccag gctgatcttg
2281 aatctgagac ccctgggcag cttctgcatg ctgattatga agagtcacta agtggcaaga
2341 atatgttccc ccagccatct tttggaccca atccattctt aggcccagtt cctattgcac
2401 ctcctttctt tcctcatgtt tggtatgggt acccttttca gggattcata gaaaatccag
2461 taatgaggca gaatattgtc ctgccctctg atgaaaaagg agaattggat ctgtctctgg
2521 aaaatctgga tctgtctaaa gattgtggtt cagtttcaac agtagatgag tttccagaag
2581 ccaggggtga acatgtacat tctctccctg aagcaagtgt gagcagtaag ccggacgaag
2641 gccggacaga gcaatcttcc cagacacgaa aggcagatac ggcattggct tccatccctc
2701 ctgtagcaga gggaaaggct catcctccca ctcagattct aaacagagag agagaaactg
2761 tgcctgttga acttgaacct aaaaggacca ttcaaagcct gaaagaaaaa acagaaaaag
2821 taaaagatcc taagactgct gctgatgtgg tcagccctgg ggccaactct gttgatagca
2881 gagtgcaaag accaaaagaa gagagttcag aagatgaaaa tgaagtgtct aatattttga
2941 gaagtggtag atccaagcag ttctataatc aaacttatgg aagcaggaag tacaaaagtg
3001 attggggcta ttctggtagg ggtggatatc aacatgtgag aagtgaggag tcctggaaag
3061 gacagccaag cagaagtcgg gatgaaggtt atcagtacca tcgaaatgtc agagggcgac
3121 catttagggg agataggagg agatcaggga tgggagatgg ccatagggga cagcacactt
3181 gatggttgtt gccgaagtat tttctaacag aaactcttag gtggaatgtt tctgaaggct
3241 ttaaaaaaaa tacaataaag taaaaaccgc agttggaact ctttcctctc cccagccccc
3301 cttaccttca ctcccatact ggacaagaca ttttggacat gagttcaagg gggcaggtta
3361 attcctggc
//