LOCUS BC117697 5450 bp mRNA linear HUM 04-OCT-2006
DEFINITION Homo sapiens collagen, type XI, alpha 1, mRNA (cDNA clone
MGC:134933 IMAGE:40073305), complete cds.
ACCESSION BC117697
VERSION BC117697.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5450)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 5450)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (06-JUN-2006) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 18 Row: l Column: 14.
FEATURES Location/Qualifiers
source 1..5450
/db_xref="H-InvDB:HIT000387831"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:134933 IMAGE:40073305"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_282"
/note="Vector: pCR-Blunt II-TOPO; Clone identification
sequence tag: NA"
gene 1..5450
/gene="COL11A1"
/gene_synonym="CO11A1"
/gene_synonym="STL2"
/db_xref="GeneID:1301"
/db_xref="HGNC:HGNC:2186"
/db_xref="MIM:120280"
CDS 302..5374
/gene="COL11A1"
/gene_synonym="CO11A1"
/gene_synonym="STL2"
/codon_start=1
/product="COL11A1 protein"
/protein_id="AAI17698.1"
/db_xref="GeneID:1301"
/db_xref="HGNC:HGNC:2186"
/db_xref="MIM:120280"
/translation="MEPWSSRWKTKRWLWDFTVTTLALTFLFQAREVRGAAPVDVLKA
LDFHNSPEGISKTTGFCTNRKNSKGSDTAYRVSKQAQLSAPTKQLFPGGTFPEDFSIL
FTVKPKKGIQSFLLSIYNEHGIQQIGVEVGRSPVFLFEDHTGKPAPEDYPLFRTVNIA
DGKWHRVAISVEKKTVTMIVDCKKKTTKPLDRSERAIVDTNGITVFGTRILDEEVFEG
DIQQFLITGDPKAAYDYCEHYSPDCDSSAPKAAQAQEPQIDEYAPEDIIEYDYEYGEA
EYKEAESVTEGPTVTEETIAQTEINGHGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPA
GIMGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPT
ISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGV
QGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPP
GPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMG
PQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQ
SGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDR
GEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTG
FPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGP
PGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQ
GPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPG
ERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGE
KGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGEN
GPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPG
PPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGN
PGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPP
GELGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKG
AKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGP
PGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPA
GPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSGLPGPPGPPGPPGEVIQPLPILSSK
KTRRHTEGMQADADDNILDYSDGMEEIFGSLNSLKQDIEHMKFPMGTQTNPARTCKDL
QLSHPDFPDGEYWIDPNQGCSGDSFKVYCNFTSGGETCIYPDKKSEGVRISSWPKEKP
GSWFSEFKRGKLLSYLDVEGNSINMVQMTFLKLLTASARQNFTYHCHQSAAWYDVSSG
SYDKALRFLGSNDEEMSYDNNPFIKTLYDGCASRKGYEKTVIEINTPKIDQVPIVDVM
INDFGDQNQKFGFEVGPVCFLG"
BASE COUNT 1434 a 1256 c 1637 g 1123 t
ORIGIN
1 tgttggtgga agcccctcat ctgccttcat tctgaaggca gggcccggca gaggaaggat
61 cagagggtcg cggccggagg gtcccggccg gtggggccaa ctcagaggga gaggaaaggg
121 ctagagacac gaagaacgca aaccatcaaa tttagaagaa aaagcccttt gactttttcc
181 ccctctccct ccccaatggc tgtgtagcaa acatccctgg cgataccttg gaaaggacga
241 agttggtctg cagtcgcaat ttcgtgggtt gagttcacag ttgtgagtgc ggggctcgga
301 gatggagccg tggtcctcta ggtggaaaac gaaacggtgg ctctgggatt tcaccgtaac
361 aaccctcgca ttgaccttcc tcttccaagc tagagaggtc agaggagctg ctccagttga
421 tgtactaaaa gcactagatt ttcacaattc tccagaggga atatcaaaaa caacgggatt
481 ttgcacaaac agaaagaatt ctaaaggctc agatactgct tacagagttt caaagcaagc
541 acaactcagt gccccaacaa aacagttatt tccaggtgga actttcccag aagacttttc
601 aatactattt acagtaaaac caaaaaaagg aattcagtct ttccttttat ctatatataa
661 tgagcatggt attcagcaaa ttggtgttga ggttgggaga tcacctgttt ttctgtttga
721 agaccacact ggaaaacctg ccccagaaga ctatcccctc ttcagaactg ttaacatcgc
781 tgacgggaag tggcatcggg tagcaatcag cgtggagaag aaaactgtga caatgattgt
841 tgattgtaag aagaaaacca cgaaaccact tgatagaagt gagagagcaa ttgttgatac
901 caatggaatc acggtttttg gaacaaggat tttggatgaa gaagtttttg agggggacat
961 tcagcagttt ttgatcacag gtgatcccaa ggcagcatat gactactgtg agcattatag
1021 tccagactgt gactcttcag cacccaaggc tgctcaagct caggaacctc agatagatga
1081 gtatgcacca gaggatataa tcgaatatga ctatgagtat ggggaagcag agtataaaga
1141 ggctgaaagt gtaacagagg gacccactgt aactgaggag acaatagcac agacggagat
1201 aaatggccat ggtgcatatg gagagaaagg acagaaagga gaaccagcag tggttgagcc
1261 tggtatgctt gtcgaaggac caccaggacc agcaggacct gcaggtatta tgggtcctcc
1321 aggtctacaa ggccccactg gaccccctgg tgaccctggc gataggggcc ccccaggacg
1381 tcctggctta ccaggggctg atggtctacc tggtcctcct ggtactatgt tgatgttacc
1441 gttccgttat ggtggtgatg gttccaaagg accaaccatc tctgctcagg aagctcaggc
1501 tcaagctatt cttcagcagg ctcggattgc tctgagaggc ccacctggcc caatgggtct
1561 aactggaaga ccaggtcctg tgggggggcc tggttcatct ggggccaaag gtgagagtgg
1621 tgatccaggt cctcagggcc ctcgaggcgt ccagggtccc cctggtccaa cgggaaaacc
1681 tggaaaaagg ggtcgtccag gtgcagatgg aggaagagga atgccaggag aacctggggc
1741 aaagggagat cgagggtttg atggacttcc gggtctgcca ggtgacaaag gtcacagggg
1801 tgaacgaggt cctcaaggtc ctccaggtcc tcctggtgat gatggaatga ggggagaaga
1861 tggagaaatt ggaccaagag gtcttccagg tgaagctggc ccacgaggtt tgctgggtcc
1921 aaggggaact ccaggagctc cagggcagcc tggtatggca ggtgtagatg gccccccagg
1981 accaaaaggg aacatgggtc cccaagggga gcctgggcct ccaggtcaac aagggaatcc
2041 aggacctcag ggtcttcctg gtccacaagg tccaattggt cctcctggtg aaaaaggacc
2101 acaaggaaaa ccaggacttg ctggacttcc tggtgctgat gggcctcctg gtcatcctgg
2161 gaaagaaggc cagtctggag aaaagggggc tctgggtccc cctggtccac aaggtcctat
2221 tggatacccg ggcccccggg gagtaaaggg agcagatggt gtcagaggtc tcaagggatc
2281 taaaggtgaa aagggtgaag atggttttcc aggattcaaa ggtgacatgg gtctaaaagg
2341 tgacagagga gaagttggtc aaattggccc aagaggggaa gatggccctg aaggacccaa
2401 aggtcgagca ggcccaactg gagacccagg tccttcaggt caagcaggag aaaagggaaa
2461 acttggagtt ccaggattac caggatatcc aggaagacaa ggtccaaagg gttccactgg
2521 attccctggg tttccaggtg ccaatggaga gaaaggtgca cggggagtag ctggcaaacc
2581 aggccctcgg ggtcagcgtg gtccaacggg tcctcgaggt tcaagaggtg caagaggtcc
2641 cactgggaaa cctgggccaa agggcacttc aggtggcgat ggccctcctg gccctccagg
2701 tgaaagaggt cctcaaggac ctcagggtcc agttggattc cctggaccaa aaggccctcc
2761 tggaccacct gggaaggatg ggctgccagg acaccctggg caacgtgggg agactggatt
2821 tcaaggcaag accggccctc ctgggccagg gggagtggtt ggaccacagg gaccaaccgg
2881 tgagactggt ccaatagggg aacgtgggca tcctggccct cctggccctc ctggtgagca
2941 aggtcttcct ggtgctgcag gaaaagaagg tgcaaagggt gatccaggtc ctcaaggtat
3001 ctcagggaaa gatggaccag caggattacg tggtttccca ggggaaagag gtcttcctgg
3061 agctcagggt gcacctggac tgaaaggagg ggaaggtccc cagggcccac caggtccagt
3121 tggctcacca ggagaacgtg ggtcagcagg tacagctggc ccaattggtt taccagggcg
3181 cccgggacct cagggtcctc ctggtccagc tggagagaaa ggtgctcctg gagaaaaagg
3241 tccccaaggg cctgcaggga gagatggagt tcaaggtcct gttggtctcc cagggccagc
3301 tggtcctgcc ggctcccctg gggaagacgg agacaagggt gaaattggtg agccgggaca
3361 aaaaggcagc aagggtgaca agggagaaaa tggccctccc ggtcccccag gtcttcaagg
3421 accagttggt gcccctggaa ttgctggagg tgatggtgaa ccaggtccta gaggacagca
3481 ggggatgttt gggcaaaaag gtgatgaggg tgccagaggc ttccctggac ctcctggtcc
3541 aataggtctt cagggtctgc caggcccacc tggtgaaaaa ggtgaaaatg gggatgttgg
3601 tcccatgggg ccacctggtc ctccaggccc aagaggccct caaggtccca atggagctga
3661 tggaccacaa ggacccccag ggtctgttgg ttcagttggt ggtgttggag aaaagggtga
3721 acctggagaa gcagggaacc cagggcctcc tggggaagca ggtgtaggcg gtcccaaagg
3781 agaaagagga gagaaagggg aagctggtcc acctggagct gctggacctc caggtgccaa
3841 ggggccacca ggtgatgatg gccctaaggg taacccgggt cctgttggtt ttcctggaga
3901 tcctggtcct cctggggaac ttggccctgc aggtcaagat ggtgttggtg gtgacaaggg
3961 tgaagatgga gatcctggtc aaccgggtcc tcctggccca tctggtgagg ctggcccacc
4021 aggtcctcct ggaaaacgag gtcctcctgg agctgcaggt gcagagggaa gacaaggtga
4081 aaaaggtgct aagggggaag caggtgcaga aggtcctcct ggaaaaaccg gcccagtcgg
4141 tcctcaggga cctgcaggaa agcctggtcc agaaggtctt cggggcatcc ctggtcctgt
4201 gggagaacaa ggtctccctg gagctgcagg ccaagatgga ccacctggtc ctatgggacc
4261 tcctggctta cctggtctca aaggtgaccc tggctccaag ggtgaaaagg gacatcctgg
4321 tttaattggc ctgattggtc ctccaggaga acaaggggaa aaaggtgacc gagggctccc
4381 tggaactcaa ggatctccag gagcaaaagg ggatggggga attcctggtc ctgctggtcc
4441 cttaggtcca cctggtcctc caggcttacc aggtcctcaa ggcccaaagg gtaacaaagg
4501 ctctactgga cccgctggcc agaaaggtga cagtggtctt ccagggcctc ctgggcctcc
4561 aggtccacct ggtgaagtca ttcagccttt accaatcttg tcctccaaaa aaacgagaag
4621 acatactgaa ggcatgcaag cagatgcaga tgataatatt cttgattact cggatggaat
4681 ggaagaaata tttggttccc tcaattccct gaaacaagac atcgagcata tgaaatttcc
4741 aatgggtact cagaccaatc cagcccgaac ttgtaaagac ctgcaactca gccatcctga
4801 cttcccagat ggtgaatatt ggattgatcc taaccaaggt tgctcaggag attccttcaa
4861 agtttactgt aatttcacat ctggtggtga gacttgcatt tatccagaca aaaaatctga
4921 gggagtaaga atttcatcat ggccaaagga gaaaccagga agttggttta gtgaatttaa
4981 gaggggaaaa ctgctttcat acttagatgt tgaaggaaat tccatcaata tggtgcaaat
5041 gacattcctg aaacttctga ctgcctctgc tcggcaaaat ttcacctacc actgtcatca
5101 gtcagcagcc tggtatgatg tgtcatcagg aagttatgac aaagcacttc gcttcctggg
5161 atcaaatgat gaggagatgt cctatgacaa taatcctttt atcaaaacac tgtatgatgg
5221 ttgtgcgtcc agaaaaggct atgaaaagac tgtcattgaa atcaatacac caaaaattga
5281 tcaagtacct attgttgatg tcatgatcaa tgactttggt gatcagaatc agaagttcgg
5341 atttgaagtt ggtcctgttt gttttcttgg ctaagattaa gacaaagaac atatcaaatc
5401 aacagaaaat ataccttggt gccaccaacc cattttgtgc caaggagagg
//