LOCUS BC117686 6316 bp mRNA linear HUM 04-OCT-2006
DEFINITION Homo sapiens SNF2 histone linker PHD RING helicase, mRNA (cDNA
clone MGC:134886 IMAGE:40071177), complete cds.
ACCESSION BC117686
VERSION BC117686.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 6316)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 6316)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (06-JUN-2006) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 18 Row: j Column: 20.
FEATURES Location/Qualifiers
source 1..6316
/db_xref="H-InvDB:HIT000387820"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:134886 IMAGE:40071177"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_282"
/note="Vector: pCR-Blunt II-TOPO; Clone identification
sequence tag: AGCTTATC sequenced from the reverse primer"
gene 1..6316
/gene="SHPRH"
/gene_synonym="bA545I5.2"
/gene_synonym="FLJ90837"
/gene_synonym="KIAA2023"
/db_xref="GeneID:257218"
/db_xref="HGNC:HGNC:19336"
/db_xref="MIM:608048"
CDS 66..5117
/gene="SHPRH"
/gene_synonym="bA545I5.2"
/gene_synonym="FLJ90837"
/gene_synonym="KIAA2023"
/codon_start=1
/product="SHPRH protein"
/protein_id="AAI17687.1"
/db_xref="GeneID:257218"
/db_xref="HGNC:HGNC:19336"
/db_xref="MIM:608048"
/translation="MSSRRKRAPPVRVDEEKRQQLHWNMHEDRRNEPIIISDDDEQPC
PGSDTSSAHYIILSDSLKEEVAHRDKKRCSKVVSFSKPIEKEETVGIFSPLSVKLNIV
ISPYHFDNSWKAFLGELTLQLLPAQSLIENFSERSITLMSSESSNQFLIYVHSKGEDV
EKQKKEPMSICDKGILVESSFSGEMLEDLGWLQKKRRIKLYQKPEGNHIIKVGIYLLE
AGLAKLDFLSDANSRMKKFNQLMKKVMEKLHNSIIPDVLEEDEDDPESEPEGQDIDEL
YHFVKQTHQQETQSIQVDVQHPALIPVLRPYQREAVNWMLQQECFRSSPATESALHFL
WREIVTSEGLKLYYNPYTGCIIREYPNSGPQLLGGILADEMGLGKTVEVLALILTHTR
QDVKQDALTLPEGKVVNYFIPSHYFGGKLKKTEIQNIEFEPKEKVQCPPTRVMILTAV
KEMNGKKGVSILSIYKYVSSIYRYDVQRNRSLLKRMLKCLIFEGLVKQIKGHGFSGTF
TLGKNYKEEDICDKTKKQAVGSPRKIQKETRKSGNKDTDSEYLPSDTSDDDDDPYYYY
YKSRRNRSKLRKKLVPSTKKGKSQPFINPDSQGHCPATSDSGITDVAMSKSTCISEFN
QEHETEDCAESLNHADSDVPPSNTMSPFNTSDYRFECICGELDQIDRKPRVQCLKCHL
WQHAKCVNYDEKNLKIKPFYCPHCLVAMEPVSTRATLIISPSSICHQWVDEINRHVRS
SSLRVLVYQGVKKDGFLQPHFLAEQDIVIITYDVLRSELNYVDIPHSNSEDGRRLRNQ
KRYMAIPSPLVAVEWWRICLDEAQMVECPTVKAAEMAQRLSGINRWCISGTPVQRGLE
DLFGLVVFLGIEPYCVKHWWVRLLYRPYCKKNPQHLYSFIAKILWRSAKKDVIDQIQI
PPQTEEIHWLHFSPVERHFYHRQHEVCCQDVVVKLRKISDWALKLSSLDRRTVTSILY
PLLRLRQACCHPQAVRGEFLPLQKSTMTMEELLTSLQKKCGTECEEAHRQLVCALNGL
AGIHIIKGEYALAAELYREVLRSSEEHKGKLKTDSLQRLHATHNLMELLIARHPGIPP
TLRDGRLEEEAKQLREHYMSKCNTEVAEAQQALYPVQQTIHELQRKIHSNSPWWLNVI
HRAIEFTIDEELVQRVRNEITSNYKQQTGKLSMSEKFRDCRGLQFLLTTQMEELNKCQ
KLVREAVKNLEGPPSRNVIESATVCHLRPARLPLNCCVFCKADELFTEYESKLFSNTV
KGQTAIFEEMIEDEEGLVDDRAPTTTRGLWAISETERSMKAILSFAKSHRFDVEFVDE
GSTSMDLFEAWKKEYKLLHEYWMALRNRVSAVDELAMATERLRVRDPREPKPNPPVLH
IIEPHEVEQNRIKLLNDKAFATSQLQKKLGQLLYLTNLEKSQDKTSGGVNPEPCPICA
RQLGKQWAVLTCGHCFCNECISIIIEQYSVGSHRSSIKCAICRQTTSHKEISYVFTSE
KANQEEDIPVKGSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTDNN
MEFAQISRVKTFQENLSAFKRDPQINILLLPLHTGSNGLTIIEATHVLLVEPILNPAH
ELQAIGRVHRIGQTKPTIVHRFLIKATIEERMQAMLKTAERSHTNSSAKHSEASVLTV
ADLADLFTKETEELE"
BASE COUNT 1985 a 1187 c 1352 g 1792 t
ORIGIN
1 gagccgcttg tgggtctttc ggaagataac tgaagttcac agttaccagc caagaaaact
61 tgaaaatgag cagccgacgg aaacgtgctc ctccagtgag ggtagatgag gaaaagaggc
121 agcagcttca ttggaatatg catgaggaca gaaggaatga acctatcatc ataagtgatg
181 atgacgagca gccctgccca ggttcagata cctcttctgc tcattatatc attctaagtg
241 atagtctaaa ggaagaagtg gctcacagag ataagaagag gtgttcaaaa gtggtgagct
301 tctcaaaacc aattgaaaaa gaagagactg ttggtatttt ttcccctttg tctgtaaagt
361 taaatattgt gatttctccc tatcattttg ataattcctg gaaagcattt ctaggagaat
421 taactcttca gcttcttcct gcacagagtt taattgaaaa tttttccgaa aggagtatta
481 cattgatgag ttcagagtca agcaatcagt tcctgattta tgttcattca aaaggtgaag
541 atgtagagaa acaaaaaaaa gaaccgatga gtatttgtga caagggtatt ctggtggagt
601 catccttcag tggtgaaatg ttagaagatt tggggtggct acaaaagaag agaagaataa
661 aactctatca gaaaccagaa ggaaatcaca ttatcaaggt tggaatttat cttttggaag
721 ctggcctagc aaaactagac ttcttgagtg atgcaaattc aagaatgaaa aagttcaatc
781 agctcatgaa gaaagtaatg gaaaagttac acaattctat tattccagat gtgttggaag
841 aggatgaaga tgatccggag agtgagccag agggacaaga cattgacgag ctgtatcact
901 ttgtgaaaca aacacatcag caagaaacgc agtccatcca agtggatgtc cagcatcctg
961 cattgatccc tgtgttgaga ccctaccaaa gagaggctgt caattggatg ctacaacaag
1021 agtgtttcag aagcagtcct gctactgaaa gtgccctgca cttcttatgg cgagagattg
1081 ttacatctga gggtctgaaa ctctactata atccatatac aggctgcatc attcgtgagt
1141 acccaaattc tgggccgcag ttgcttggtg gaattttagc agatgagatg ggtcttggaa
1201 agacagtgga ggttttggct ctgattctga cacatactcg acaagatgtc aagcaagatg
1261 ctctcactct tcccgaggga aaagtggtga attattttat tccgtcacat tattttggag
1321 gaaaactgaa aaagacagaa atccagaata tcgaatttga accaaaagaa aaagttcaat
1381 gccctcctac acgtgtgatg atactgacag ctgtgaaaga aatgaatgga aaaaaaggag
1441 tgtccatcct ttccatctat aagtatgtca gttctatata tagatacgat gttcaacgga
1501 acaggagtct tttgaaacgg atgctgaaat gtttaatttt tgaaggtctc gtgaaacaga
1561 tcaaaggcca tggtttttct gggactttta cattgggaaa gaattacaag gaagaggata
1621 tatgtgataa aacaaaaaag caggcagtag ggagtccaag gaaaattcag aaagaaacta
1681 gaaaatcagg gaacaaggac acagattctg aatacttgcc atcagacacc tctgatgatg
1741 atgatgatcc ttactattat tattataagt ccaggagaaa tcgcagtaaa ttgaggaaaa
1801 agcttgttcc atccacaaaa aaaggaaaaa gtcaaccatt tatcaatccc gattcacaag
1861 gtcactgtcc agctactagc gactctggaa taactgatgt tgctatgtct aaaagtacat
1921 gtatctctga attcaaccaa gaacatgaaa cagaggactg tgctgaatct ctaaatcatg
1981 ctgatagtga tgtaccacct tctaatacca tgagtccctt taacacctct gattaccgct
2041 ttgagtgtat atgtggtgaa cttgatcaga tagatcgtaa gcctcgtgtt caatgcctga
2101 agtgtcacct gtggcaacat gcaaagtgtg tgaattatga tgagaaaaat ctgaagatca
2161 agccttttta ctgcccccac tgccttgttg caatggaacc agtgtcaaca agagcaactc
2221 tgatcatctc tccaagttcc atctgtcacc agtgggtgga tgagatcaac aggcatgtga
2281 ggtcgtcatc tcttcgagtc ttggtatatc aaggagtgaa gaaagatggc tttttacaac
2341 ctcatttttt ggcagaacag gatatagtta tcattaccta tgatgtactg cgttcagaat
2401 taaattatgt cgatatccca catagcaata gtgaggatgg gcgtcgccta cggaaccaga
2461 agcgctatat ggctatcccg agccccctgg tagctgtgga gtggtggagg atctgccttg
2521 atgaagctca gatggttgag tgtcccacag taaaagctgc agaaatggcc cagcgtttga
2581 gtgggattaa tcgatggtgt atcagtggca ctccagtaca gagaggatta gaggatcttt
2641 ttgggttagt ggtctttctt ggtattgaac cttactgtgt caaacactgg tgggttcgac
2701 ttctctatcg gccttactgc aagaagaatc ctcagcatct ctacagcttt attgccaaga
2761 tactgtggag gtctgcaaag aaagatgtga ttgaccaaat ccaaatacca ccacaaaccg
2821 aagaaataca ctggctccac ttttctccag tggaaaggca tttctatcac cgtcagcatg
2881 aggtgtgctg ccaggatgtg gtggtaaaac tcaggaagat ttctgactgg gctctgaagc
2941 tcagcagcct agacagaagg actgtcacct ctatcctgta tccattgctg aggctcagac
3001 aggcctgctg tcacccacag gctgttcgtg gagagttctt gccactccaa aaaagcacca
3061 tgacaatgga agagctgctg acatctttgc agaagaaatg tggaactgaa tgtgaagaag
3121 cacatcgaca gctagtttgt gctctcaatg gcttagcagg cattcatatt attaaaggtg
3181 agtatgcctt ggcagcagaa ttgtacagag aagtgttgcg ctcctcggag gaacacaaag
3241 gaaaactcaa aactgattca cttcaaagac ttcatgctac ccataacttg atggaattgt
3301 tgatagccag gcacccaggg ataccaccta ccttgcgtga tggccgactt gaggaagagg
3361 ccaaacagct gcgagagcac tacatgagca agtgtaatac agaagttgct gaagcccagc
3421 aagctttata tcctgtgcag cagaccatcc atgagcttca aagaaagatt cattctaatt
3481 ctccttggtg gctaaatgtg atccacagag caatagaatt tactattgat gaggagctag
3541 ttcagcgagt gcgaaatgaa ataaccagca actacaagca acaaactggc aagctttcta
3601 tgtcagagaa gttccgtgat tgcagaggtc ttcagttctt acttacaaca caaatggaag
3661 agctaaataa atgccagaag ctagtaagag aggctgtaaa aaacctggag ggacctccat
3721 ctcgtaatgt tattgagtct gcaacagtct gtcacctccg accagccaga cttcctctca
3781 actgctgtgt cttttgtaaa gctgatgaat tgttcacaga gtatgaatca aagctatttt
3841 ccaacacagt caaaggccag actgcaatat ttgaggagat gatagaagat gaagaaggac
3901 tggtggatga tcgagcacct accaccaccc ggggtctctg ggcaataagt gagacagagc
3961 gatctatgaa agcaatacta tcatttgcaa aatcacatag gtttgatgtt gaatttgttg
4021 atgaaggaag cacttcaatg gatctctttg aagcatggaa gaaggaatat aagttgcttc
4081 atgaatattg gatggctctg aggaatcgtg tgtctgctgt tgatgaactt gcaatggcta
4141 cagaacgact aagagtgcgt gatcctaggg agccaaagcc taatccgcct gttcttcata
4201 tcattgaacc acatgaggta gaacaaaacc gaataaaact actaaatgat aaagcttttg
4261 ctacatcaca gcttcagaaa aaacttgggc agcttcttta cctaactaat ttggagaagt
4321 ctcaagataa aacatcggga ggtgttaatc cagaaccttg tccaatctgt gctcgacagc
4381 taggaaaaca gtgggcggta ctgacctgtg gtcactgttt ctgtaatgaa tgcatttcta
4441 taattattga acaatacagc gtgggatctc acagaagctc cattaagtgt gcaatctgcc
4501 gccagaccac atctcacaaa gaaatctcgt atgtctttac ctcagagaaa gcaaaccagg
4561 aggaggacat ccctgtgaag ggcagccatt ctacaaaagt ggaagctgtg gtcagaactc
4621 tgatgaaaat acagcttaga gatccagggg ccaaagcact cgttttctca acgtggcaag
4681 atgtattaga tattatttca aaagctctta ctgacaacaa catggaattt gcacaaatca
4741 gtcgtgttaa gacatttcag gagaaccttt cagcatttaa acgtgatccc caaatcaata
4801 ttttgctgct gcccctgcac acaggttcta atggattaac tatcattgaa gcaactcatg
4861 ttctcttggt ggagcccata ttgaaccctg cccatgagct tcaggccata gggagggtgc
4921 accgaattgg acagacaaaa cctactattg tacacagatt cttaattaaa gcaacaatag
4981 aagaaagaat gcaggcaatg ctgaaaactg ctgagagaag tcacacgaac tcatcagcaa
5041 agcattcaga ggcctctgtc ttgactgtgg ctgacctggc agacctattt accaaagaaa
5101 ctgaagagct tgaatgaact acacttgatt cattccatgg actttagtgt attaataaac
5161 tttcatagct gtagagcaaa gttacaagtt ttaaaaaccc agtagataac agtaacactg
5221 ttcctagttg aatgaatttg tttattgttc tggttataca gtggcttagt acttattgag
5281 tccttttcaa tatactgttt ccaaaagatc tataaagatt cttaatttta cactcctaat
5341 aaaacattta ttttttgtcc caaatagtat ctatatctga tgatgcaagg gaattaagag
5401 aggtaatgtg tacttttctt atgataagat cactcataaa acagttggaa taagaaagta
5461 aactagtcta gttttatatg acctggtata ttgaacaaac atagatctca gttttggaag
5521 ggccttcagt atctttagca catgattcac caatatcttg ttagtaatat tttaagtaga
5581 tggtgaatta tattaaccca ttttttgagt aggcttatac cataacttta cacctagtaa
5641 ttttgcagta atacaactcc ttacaataag ttaatgttag acagttattt gtttcttctg
5701 catcttgcta ctgaaaacaa aaacaatgaa aatattcata tttctattat gtgtaaagtg
5761 gtgttagtgt aaacagttaa ctccaaatag attttttaat gtattaatga ttaccttaaa
5821 attatctgct ttccctactc ttaatttttc ttattgttaa agtttttata tgttgtaaga
5881 ttgatgtatc tgtaaatatt gcagttttta tgattttgtt ttattataac atggaaatat
5941 ggcagggttt ttttttttaa tcattattat actgatgtct tggattcttt ttctttccca
6001 tgttcttgtg taactagact ttttagccag tgatatctga attcatggta gagttgttat
6061 ttcactccag ttgttcctcc cttaagcacg agtctttgac cttttgaaca agagaatgcc
6121 atgttcacat aagcaaatcg ttgcaagtga taataacgaa gtgtttcttc ttctgtgagg
6181 aattaatgga ctttgaaatt gctgaataag gagtagcttg ttacatccta gccatttgat
6241 gtaatacaaa tgttcttatt tggcttcctt ttctttgagc cttcagagtt ttaaaggacc
6301 ctctttgacc ctcagg
//