LOCUS BC117686 6316 bp mRNA linear HUM 04-OCT-2006 DEFINITION Homo sapiens SNF2 histone linker PHD RING helicase, mRNA (cDNA clone MGC:134886 IMAGE:40071177), complete cds. ACCESSION BC117686 VERSION BC117686.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 6316) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 6316) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (06-JUN-2006) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Baylor Human Genome Sequencing Center cDNA Library Preparation: Baylor Human Genome Sequencing Center cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAM Plate: 18 Row: j Column: 20. FEATURES Location/Qualifiers source 1..6316 /db_xref="H-InvDB:HIT000387820" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:134886 IMAGE:40071177" /tissue_type="PCR rescued clones" /clone_lib="NIH_MGC_282" /note="Vector: pCR-Blunt II-TOPO; Clone identification sequence tag: AGCTTATC sequenced from the reverse primer" gene 1..6316 /gene="SHPRH" /gene_synonym="bA545I5.2" /gene_synonym="FLJ90837" /gene_synonym="KIAA2023" /db_xref="GeneID:257218" /db_xref="HGNC:HGNC:19336" /db_xref="MIM:608048" CDS 66..5117 /gene="SHPRH" /gene_synonym="bA545I5.2" /gene_synonym="FLJ90837" /gene_synonym="KIAA2023" /codon_start=1 /product="SHPRH protein" /protein_id="AAI17687.1" /db_xref="GeneID:257218" /db_xref="HGNC:HGNC:19336" /db_xref="MIM:608048" /translation="MSSRRKRAPPVRVDEEKRQQLHWNMHEDRRNEPIIISDDDEQPC PGSDTSSAHYIILSDSLKEEVAHRDKKRCSKVVSFSKPIEKEETVGIFSPLSVKLNIV ISPYHFDNSWKAFLGELTLQLLPAQSLIENFSERSITLMSSESSNQFLIYVHSKGEDV EKQKKEPMSICDKGILVESSFSGEMLEDLGWLQKKRRIKLYQKPEGNHIIKVGIYLLE AGLAKLDFLSDANSRMKKFNQLMKKVMEKLHNSIIPDVLEEDEDDPESEPEGQDIDEL YHFVKQTHQQETQSIQVDVQHPALIPVLRPYQREAVNWMLQQECFRSSPATESALHFL WREIVTSEGLKLYYNPYTGCIIREYPNSGPQLLGGILADEMGLGKTVEVLALILTHTR QDVKQDALTLPEGKVVNYFIPSHYFGGKLKKTEIQNIEFEPKEKVQCPPTRVMILTAV KEMNGKKGVSILSIYKYVSSIYRYDVQRNRSLLKRMLKCLIFEGLVKQIKGHGFSGTF TLGKNYKEEDICDKTKKQAVGSPRKIQKETRKSGNKDTDSEYLPSDTSDDDDDPYYYY YKSRRNRSKLRKKLVPSTKKGKSQPFINPDSQGHCPATSDSGITDVAMSKSTCISEFN QEHETEDCAESLNHADSDVPPSNTMSPFNTSDYRFECICGELDQIDRKPRVQCLKCHL WQHAKCVNYDEKNLKIKPFYCPHCLVAMEPVSTRATLIISPSSICHQWVDEINRHVRS SSLRVLVYQGVKKDGFLQPHFLAEQDIVIITYDVLRSELNYVDIPHSNSEDGRRLRNQ KRYMAIPSPLVAVEWWRICLDEAQMVECPTVKAAEMAQRLSGINRWCISGTPVQRGLE DLFGLVVFLGIEPYCVKHWWVRLLYRPYCKKNPQHLYSFIAKILWRSAKKDVIDQIQI PPQTEEIHWLHFSPVERHFYHRQHEVCCQDVVVKLRKISDWALKLSSLDRRTVTSILY PLLRLRQACCHPQAVRGEFLPLQKSTMTMEELLTSLQKKCGTECEEAHRQLVCALNGL AGIHIIKGEYALAAELYREVLRSSEEHKGKLKTDSLQRLHATHNLMELLIARHPGIPP TLRDGRLEEEAKQLREHYMSKCNTEVAEAQQALYPVQQTIHELQRKIHSNSPWWLNVI HRAIEFTIDEELVQRVRNEITSNYKQQTGKLSMSEKFRDCRGLQFLLTTQMEELNKCQ KLVREAVKNLEGPPSRNVIESATVCHLRPARLPLNCCVFCKADELFTEYESKLFSNTV KGQTAIFEEMIEDEEGLVDDRAPTTTRGLWAISETERSMKAILSFAKSHRFDVEFVDE GSTSMDLFEAWKKEYKLLHEYWMALRNRVSAVDELAMATERLRVRDPREPKPNPPVLH IIEPHEVEQNRIKLLNDKAFATSQLQKKLGQLLYLTNLEKSQDKTSGGVNPEPCPICA RQLGKQWAVLTCGHCFCNECISIIIEQYSVGSHRSSIKCAICRQTTSHKEISYVFTSE KANQEEDIPVKGSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTDNN MEFAQISRVKTFQENLSAFKRDPQINILLLPLHTGSNGLTIIEATHVLLVEPILNPAH ELQAIGRVHRIGQTKPTIVHRFLIKATIEERMQAMLKTAERSHTNSSAKHSEASVLTV ADLADLFTKETEELE" BASE COUNT 1985 a 1187 c 1352 g 1792 t ORIGIN 1 gagccgcttg tgggtctttc ggaagataac tgaagttcac agttaccagc caagaaaact 61 tgaaaatgag cagccgacgg aaacgtgctc ctccagtgag ggtagatgag gaaaagaggc 121 agcagcttca ttggaatatg catgaggaca gaaggaatga acctatcatc ataagtgatg 181 atgacgagca gccctgccca ggttcagata cctcttctgc tcattatatc attctaagtg 241 atagtctaaa ggaagaagtg gctcacagag ataagaagag gtgttcaaaa gtggtgagct 301 tctcaaaacc aattgaaaaa gaagagactg ttggtatttt ttcccctttg tctgtaaagt 361 taaatattgt gatttctccc tatcattttg ataattcctg gaaagcattt ctaggagaat 421 taactcttca gcttcttcct gcacagagtt taattgaaaa tttttccgaa aggagtatta 481 cattgatgag ttcagagtca agcaatcagt tcctgattta tgttcattca aaaggtgaag 541 atgtagagaa acaaaaaaaa gaaccgatga gtatttgtga caagggtatt ctggtggagt 601 catccttcag tggtgaaatg ttagaagatt tggggtggct acaaaagaag agaagaataa 661 aactctatca gaaaccagaa ggaaatcaca ttatcaaggt tggaatttat cttttggaag 721 ctggcctagc aaaactagac ttcttgagtg atgcaaattc aagaatgaaa aagttcaatc 781 agctcatgaa gaaagtaatg gaaaagttac acaattctat tattccagat gtgttggaag 841 aggatgaaga tgatccggag agtgagccag agggacaaga cattgacgag ctgtatcact 901 ttgtgaaaca aacacatcag caagaaacgc agtccatcca agtggatgtc cagcatcctg 961 cattgatccc tgtgttgaga ccctaccaaa gagaggctgt caattggatg ctacaacaag 1021 agtgtttcag aagcagtcct gctactgaaa gtgccctgca cttcttatgg cgagagattg 1081 ttacatctga gggtctgaaa ctctactata atccatatac aggctgcatc attcgtgagt 1141 acccaaattc tgggccgcag ttgcttggtg gaattttagc agatgagatg ggtcttggaa 1201 agacagtgga ggttttggct ctgattctga cacatactcg acaagatgtc aagcaagatg 1261 ctctcactct tcccgaggga aaagtggtga attattttat tccgtcacat tattttggag 1321 gaaaactgaa aaagacagaa atccagaata tcgaatttga accaaaagaa aaagttcaat 1381 gccctcctac acgtgtgatg atactgacag ctgtgaaaga aatgaatgga aaaaaaggag 1441 tgtccatcct ttccatctat aagtatgtca gttctatata tagatacgat gttcaacgga 1501 acaggagtct tttgaaacgg atgctgaaat gtttaatttt tgaaggtctc gtgaaacaga 1561 tcaaaggcca tggtttttct gggactttta cattgggaaa gaattacaag gaagaggata 1621 tatgtgataa aacaaaaaag caggcagtag ggagtccaag gaaaattcag aaagaaacta 1681 gaaaatcagg gaacaaggac acagattctg aatacttgcc atcagacacc tctgatgatg 1741 atgatgatcc ttactattat tattataagt ccaggagaaa tcgcagtaaa ttgaggaaaa 1801 agcttgttcc atccacaaaa aaaggaaaaa gtcaaccatt tatcaatccc gattcacaag 1861 gtcactgtcc agctactagc gactctggaa taactgatgt tgctatgtct aaaagtacat 1921 gtatctctga attcaaccaa gaacatgaaa cagaggactg tgctgaatct ctaaatcatg 1981 ctgatagtga tgtaccacct tctaatacca tgagtccctt taacacctct gattaccgct 2041 ttgagtgtat atgtggtgaa cttgatcaga tagatcgtaa gcctcgtgtt caatgcctga 2101 agtgtcacct gtggcaacat gcaaagtgtg tgaattatga tgagaaaaat ctgaagatca 2161 agccttttta ctgcccccac tgccttgttg caatggaacc agtgtcaaca agagcaactc 2221 tgatcatctc tccaagttcc atctgtcacc agtgggtgga tgagatcaac aggcatgtga 2281 ggtcgtcatc tcttcgagtc ttggtatatc aaggagtgaa gaaagatggc tttttacaac 2341 ctcatttttt ggcagaacag gatatagtta tcattaccta tgatgtactg cgttcagaat 2401 taaattatgt cgatatccca catagcaata gtgaggatgg gcgtcgccta cggaaccaga 2461 agcgctatat ggctatcccg agccccctgg tagctgtgga gtggtggagg atctgccttg 2521 atgaagctca gatggttgag tgtcccacag taaaagctgc agaaatggcc cagcgtttga 2581 gtgggattaa tcgatggtgt atcagtggca ctccagtaca gagaggatta gaggatcttt 2641 ttgggttagt ggtctttctt ggtattgaac cttactgtgt caaacactgg tgggttcgac 2701 ttctctatcg gccttactgc aagaagaatc ctcagcatct ctacagcttt attgccaaga 2761 tactgtggag gtctgcaaag aaagatgtga ttgaccaaat ccaaatacca ccacaaaccg 2821 aagaaataca ctggctccac ttttctccag tggaaaggca tttctatcac cgtcagcatg 2881 aggtgtgctg ccaggatgtg gtggtaaaac tcaggaagat ttctgactgg gctctgaagc 2941 tcagcagcct agacagaagg actgtcacct ctatcctgta tccattgctg aggctcagac 3001 aggcctgctg tcacccacag gctgttcgtg gagagttctt gccactccaa aaaagcacca 3061 tgacaatgga agagctgctg acatctttgc agaagaaatg tggaactgaa tgtgaagaag 3121 cacatcgaca gctagtttgt gctctcaatg gcttagcagg cattcatatt attaaaggtg 3181 agtatgcctt ggcagcagaa ttgtacagag aagtgttgcg ctcctcggag gaacacaaag 3241 gaaaactcaa aactgattca cttcaaagac ttcatgctac ccataacttg atggaattgt 3301 tgatagccag gcacccaggg ataccaccta ccttgcgtga tggccgactt gaggaagagg 3361 ccaaacagct gcgagagcac tacatgagca agtgtaatac agaagttgct gaagcccagc 3421 aagctttata tcctgtgcag cagaccatcc atgagcttca aagaaagatt cattctaatt 3481 ctccttggtg gctaaatgtg atccacagag caatagaatt tactattgat gaggagctag 3541 ttcagcgagt gcgaaatgaa ataaccagca actacaagca acaaactggc aagctttcta 3601 tgtcagagaa gttccgtgat tgcagaggtc ttcagttctt acttacaaca caaatggaag 3661 agctaaataa atgccagaag ctagtaagag aggctgtaaa aaacctggag ggacctccat 3721 ctcgtaatgt tattgagtct gcaacagtct gtcacctccg accagccaga cttcctctca 3781 actgctgtgt cttttgtaaa gctgatgaat tgttcacaga gtatgaatca aagctatttt 3841 ccaacacagt caaaggccag actgcaatat ttgaggagat gatagaagat gaagaaggac 3901 tggtggatga tcgagcacct accaccaccc ggggtctctg ggcaataagt gagacagagc 3961 gatctatgaa agcaatacta tcatttgcaa aatcacatag gtttgatgtt gaatttgttg 4021 atgaaggaag cacttcaatg gatctctttg aagcatggaa gaaggaatat aagttgcttc 4081 atgaatattg gatggctctg aggaatcgtg tgtctgctgt tgatgaactt gcaatggcta 4141 cagaacgact aagagtgcgt gatcctaggg agccaaagcc taatccgcct gttcttcata 4201 tcattgaacc acatgaggta gaacaaaacc gaataaaact actaaatgat aaagcttttg 4261 ctacatcaca gcttcagaaa aaacttgggc agcttcttta cctaactaat ttggagaagt 4321 ctcaagataa aacatcggga ggtgttaatc cagaaccttg tccaatctgt gctcgacagc 4381 taggaaaaca gtgggcggta ctgacctgtg gtcactgttt ctgtaatgaa tgcatttcta 4441 taattattga acaatacagc gtgggatctc acagaagctc cattaagtgt gcaatctgcc 4501 gccagaccac atctcacaaa gaaatctcgt atgtctttac ctcagagaaa gcaaaccagg 4561 aggaggacat ccctgtgaag ggcagccatt ctacaaaagt ggaagctgtg gtcagaactc 4621 tgatgaaaat acagcttaga gatccagggg ccaaagcact cgttttctca acgtggcaag 4681 atgtattaga tattatttca aaagctctta ctgacaacaa catggaattt gcacaaatca 4741 gtcgtgttaa gacatttcag gagaaccttt cagcatttaa acgtgatccc caaatcaata 4801 ttttgctgct gcccctgcac acaggttcta atggattaac tatcattgaa gcaactcatg 4861 ttctcttggt ggagcccata ttgaaccctg cccatgagct tcaggccata gggagggtgc 4921 accgaattgg acagacaaaa cctactattg tacacagatt cttaattaaa gcaacaatag 4981 aagaaagaat gcaggcaatg ctgaaaactg ctgagagaag tcacacgaac tcatcagcaa 5041 agcattcaga ggcctctgtc ttgactgtgg ctgacctggc agacctattt accaaagaaa 5101 ctgaagagct tgaatgaact acacttgatt cattccatgg actttagtgt attaataaac 5161 tttcatagct gtagagcaaa gttacaagtt ttaaaaaccc agtagataac agtaacactg 5221 ttcctagttg aatgaatttg tttattgttc tggttataca gtggcttagt acttattgag 5281 tccttttcaa tatactgttt ccaaaagatc tataaagatt cttaatttta cactcctaat 5341 aaaacattta ttttttgtcc caaatagtat ctatatctga tgatgcaagg gaattaagag 5401 aggtaatgtg tacttttctt atgataagat cactcataaa acagttggaa taagaaagta 5461 aactagtcta gttttatatg acctggtata ttgaacaaac atagatctca gttttggaag 5521 ggccttcagt atctttagca catgattcac caatatcttg ttagtaatat tttaagtaga 5581 tggtgaatta tattaaccca ttttttgagt aggcttatac cataacttta cacctagtaa 5641 ttttgcagta atacaactcc ttacaataag ttaatgttag acagttattt gtttcttctg 5701 catcttgcta ctgaaaacaa aaacaatgaa aatattcata tttctattat gtgtaaagtg 5761 gtgttagtgt aaacagttaa ctccaaatag attttttaat gtattaatga ttaccttaaa 5821 attatctgct ttccctactc ttaatttttc ttattgttaa agtttttata tgttgtaaga 5881 ttgatgtatc tgtaaatatt gcagttttta tgattttgtt ttattataac atggaaatat 5941 ggcagggttt ttttttttaa tcattattat actgatgtct tggattcttt ttctttccca 6001 tgttcttgtg taactagact ttttagccag tgatatctga attcatggta gagttgttat 6061 ttcactccag ttgttcctcc cttaagcacg agtctttgac cttttgaaca agagaatgcc 6121 atgttcacat aagcaaatcg ttgcaagtga taataacgaa gtgtttcttc ttctgtgagg 6181 aattaatgga ctttgaaatt gctgaataag gagtagcttg ttacatccta gccatttgat 6241 gtaatacaaa tgttcttatt tggcttcctt ttctttgagc cttcagagtt ttaaaggacc 6301 ctctttgacc ctcagg //