LOCUS BC117685 671 bp mRNA linear HUM 04-OCT-2006 DEFINITION Homo sapiens SNF2 histone linker PHD RING helicase, mRNA (cDNA clone IMAGE:40071170), complete cds. ACCESSION BC117685 VERSION BC117685.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 671) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 671) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (06-JUN-2006) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Baylor Human Genome Sequencing Center cDNA Library Preparation: Baylor Human Genome Sequencing Center cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAM Plate: 18 Row: j Column: 19 This clone has the following problem: The cds is short compared to the longest cds in the locus. FEATURES Location/Qualifiers source 1..671 /db_xref="H-InvDB:HIT000387819" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:40071170" /tissue_type="PCR rescued clones" /clone_lib="NIH_MGC_282" /note="Vector: pCR-Blunt II-TOPO; Clone identification sequence tag: GGCTATTT sequenced from the reverse primer" gene 1..671 /gene="SHPRH" /gene_synonym="bA545I5.2" /gene_synonym="FLJ90837" /gene_synonym="KIAA2023" /db_xref="GeneID:257218" /db_xref="HGNC:HGNC:19336" /db_xref="MIM:608048" CDS 66..533 /gene="SHPRH" /gene_synonym="bA545I5.2" /gene_synonym="FLJ90837" /gene_synonym="KIAA2023" /codon_start=1 /product="SHPRH protein" /protein_id="AAI17686.1" /db_xref="GeneID:257218" /db_xref="HGNC:HGNC:19336" /db_xref="MIM:608048" /translation="MSSRRKRAPPVRVDEEKRQQLHWNMHEDRRNEPIIISDDDEQPC PGSDTSSAHYIILSDSLKEEVAHRDKKRCSKVVSFSKPIEKEETVGIFSPLSVKLNIV ISPYHFDNSWKAFLGELTLQLLPAQSLIENFSERSITLMSSESSNNNEVFLLL" BASE COUNT 203 a 119 c 147 g 202 t ORIGIN 1 gagccgcttg tgggtctttc ggaagataac tgaagttcac agttaccagc caagaaaact 61 tgaaaatgag cagccgacgg aaacgtgctc ctccagtgag ggtagatgag gaaaagaggc 121 agcagcttca ttggaatatg catgaggaca gaaggaatga acctatcatc ataagtgatg 181 atgacgagca gccctgccca ggttcagata cctcttctgc tcattatatc attctaagtg 241 atagtctaaa ggaagaagtg gctcacagag ataagaagag gtgttcaaaa gtggtgagct 301 tctcaaaacc aattgaaaaa gaagagactg ttggtatttt ttcccctttg tctgtaaagt 361 taaatattgt gatttctccc tatcattttg ataattcctg gaaagcattt ctaggagaat 421 taactcttca gcttcttcct gcacagagtt taattgaaaa tttttccgaa aggagtatta 481 cattgatgag ttcagagtca agcaataata acgaagtgtt tcttcttctg tgaggaatta 541 atggactttg aaattgctga ataaggagta gcttgttaca tcctagccat ttgatgtaat 601 acaaatgttc ttatttggct tccttttctt tgagccttca gagttttaaa ggaccctctt 661 tgaccctcag g //