LOCUS BC117673 3370 bp mRNA linear HUM 11-APR-2007
DEFINITION Homo sapiens caprin family member 2, mRNA (cDNA clone MGC:134848
IMAGE:40068104), complete cds.
ACCESSION BC117673
VERSION BC117673.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3370)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3370)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (06-JUN-2006) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 18 Row: i Column: 6.
FEATURES Location/Qualifiers
source 1..3370
/db_xref="H-InvDB:HIT000387807"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:134848 IMAGE:40068104"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_282"
/note="Vector: pCR-Blunt II-TOPO; Clone identification
sequence tag: TGTTACTC sequenced from the reverse primer"
gene 1..3370
/gene="CAPRIN2"
/gene_synonym="caprin-2"
/gene_synonym="EEG-1"
/gene_synonym="EEG1"
/db_xref="GeneID:65981"
/db_xref="HGNC:HGNC:21259"
/db_xref="MIM:610375"
CDS 549..3266
/gene="CAPRIN2"
/gene_synonym="caprin-2"
/gene_synonym="EEG-1"
/gene_synonym="EEG1"
/codon_start=1
/product="CAPRIN2 protein"
/protein_id="AAI17674.1"
/db_xref="GeneID:65981"
/db_xref="HGNC:HGNC:21259"
/db_xref="MIM:610375"
/translation="MEVQVSQASLGFELTSVEKSLREWSRLSREVIAWLCPSSPNFIL
NFPPPPSASSVSMVQLFSSPFGYQSPSGHSEEEREGNMKSAKPQVNHSQHGESQRALS
PLQSTLSSAASPSQAYETYIENGLICLKHKIRNIEKKKLKLEDYKDRLKSGEHLNPDQ
LEAVEKYEEVLHNLEFAKELQKTFSGLSLDLLKAQKKAQRREHMLKLEAEKKKLRTIL
QVQYVLQNLTQEHVQKDFKGGLNGAVYLPSKELDYLIKFSKLTCPERNESLSVEDQME
QSSLYFWDLLEGSEKAVVGTTYKHLKDLLSKLLNSGYFESIPVPKNAKEKEVPLEEEM
LIQSEKKTQLSKTESVKESESLMEFAQPEIQPQEFLNRRYMTEVDYSNKQGEEQPWEA
DYARKPNLPKRWDMLTEPDGQEKKQESFKSWEASGKHQEVSKPAVSLEQRKQDTSKLR
STLPEEQKKQEISKSKPSPSQWKQDTPKSKAGYVQEEQKKQETPKLWPVQLQKEQDPK
KQTPKSWTPSMQSEQNTTKSWTTPMCEEQDSKQPETPKSWENNVESQKHSLTSQSQIS
PKSWGVATASLIPNDQLLPRKLNTEPKDVPKPVHQPVGSSSTLPKDPVLRKEKLQDLM
TQIQGTCNFMQESVLDFDKPSSAIPTSQPPSATPGSPVASKEQNLSSQSDFLQEPLQA
AIPPGKQPSSLASPNPPMAKGSEQGFQSPPASSSSVTINTAPFQAMQTVFNVNAPLPP
RKEQEIKESPYSPGYNQSFTTASTQTPPQCQLPSIHVEQTVHSQETAQTNVFPRPTQP
FVNSRGSVRGCTRGGRLITNSYRSPGGYKGFDTYRGLPSISNGNYSQLQFQAREYSGA
PYSQRDNFQQCYKRGGTSGGPRANSRANCFIMRNSLLLIKQQGGVILLR"
BASE COUNT 1064 a 748 c 764 g 794 t
ORIGIN
1 tagggcacgg gaagggctcg ctagaatgag ctcttaaact ggttgggtgt aagcggtttt
61 gggctagtct aaaccaaaca actgagaata aacgcggggt tcctgcaggt tgagagagta
121 cctgtctgca aatgtccagt agtgatggat tgccttgtag gccccagagc aatcggggaa
181 gttagcattc ttgttcaaga agctgctggt tcacttagag ctataaaaga atgttgtgag
241 tttggatttt cttccaaacg ttcaggattg aggttagggc tggtggtgag ggatcatgta
301 aagaggtttg agtggctcag ccttaggtcc cggtgtggaa agcttattct tttggtgtca
361 tcacgtggcc atgggaatta tttagaatgt gatctgccct catgagaaga aaggagctct
421 gaagccgttg cagttcttcc tccctatgtg gaaaatcgaa tttctggaaa catcctccgt
481 attgggagat tttgcctatg taaaggctat ccttattggc tagcggcact aattacttta
541 aaagtaggat ggaagtacaa gtatctcaag catcattggg tttcgagctc acttctgtgg
601 aaaagagttt aagggagtgg tctagacttt ccagggaagt tattgcctgg ctgtgtccct
661 ctagtcctaa ttttatactt aactttcccc cacctccttc agcctcatct gtttcaatgg
721 tgcaactctt ttcatcccct tttggttacc agtcaccttc aggccattca gaggaggaaa
781 gagaggggaa tatgaagtca gccaagcccc aagtgaacca cagtcagcat ggggaaagcc
841 agcgggcctt gagccccctg cagtctactc tgagttctgc tgcatctcct tcccaagcgt
901 atgagaccta tattgaaaat ggactcatat gccttaaaca caaaattaga aacatcgaga
961 aaaagaagct caaactggag gattataagg atcgcctgaa aagtggagag catcttaatc
1021 cagaccagtt ggaagctgta gagaaatatg aagaagtgct acataatttg gaatttgcca
1081 aggagcttca aaaaaccttt tctgggttga gcctagatct actaaaagcg caaaagaagg
1141 cccagagaag ggagcacatg ctaaaacttg aggctgagaa gaaaaagctt cgaactatac
1201 ttcaagttca gtatgtattg cagaacttga cacaggagca cgtacaaaaa gacttcaaag
1261 ggggtttgaa tggtgcagtg tatttgcctt caaaagaact tgactacctc attaagtttt
1321 caaaactgac ctgccctgaa agaaatgaaa gtctgagtgt tgaagaccag atggagcagt
1381 catccttgta cttttgggac cttttggaag gtagtgagaa agcagtggta ggaacgacat
1441 acaaacactt gaaggatcta ctgtctaaat tgctgaactc aggctatttt gaaagtatcc
1501 cagttcccaa aaatgccaag gaaaaggaag taccactgga ggaagaaatg ctaatacaat
1561 cagagaaaaa aacacaatta tcgaagactg aatctgtcaa agagtcagag tctctaatgg
1621 aatttgccca gccagagata caaccacaag agtttcttaa cagacgctat atgacagaag
1681 tagattattc aaacaaacaa ggcgaagagc aaccttggga agcagattat gctagaaaac
1741 caaatctccc aaaacgttgg gatatgctta ctgaaccaga tggtcaagag aagaaacagg
1801 agtcctttaa gtcctgggag gcttctggta agcaccagga ggtatccaag cctgcagttt
1861 ccttagaaca gaggaaacaa gacacctcaa aactcaggtc tactctgccg gaagagcaga
1921 agaagcagga gatctccaaa tccaagccat ctcctagcca gtggaagcaa gatacaccta
1981 aatccaaagc agggtatgtt caagaggaac aaaagaaaca ggagacacca aagctgtggc
2041 cagttcagct gcagaaagaa caagatccaa agaagcaaac tccaaagtct tggacacctt
2101 ccatgcagag cgaacagaac accaccaagt catggaccac tcccatgtgt gaagaacagg
2161 attcaaaaca gccagagact ccaaaatcct gggaaaacaa tgttgagagt caaaaacact
2221 ctttaacatc acagtcacag atttctccaa agtcctgggg agtagctaca gcaagcctca
2281 taccaaatga ccagctgctg cccaggaagt tgaacacaga acccaaagat gtgcctaagc
2341 ctgtgcatca gcctgtaggt tcttcatcta cccttccgaa ggatccagta ttgaggaaag
2401 aaaaactgca ggatctgatg actcagattc aaggaacttg taactttatg caagagtctg
2461 ttcttgactt tgacaaacct tcaagtgcaa ttccaacgtc acaaccgcct tcagctactc
2521 caggtagccc cgtagcatct aaagaacaaa atctgtccag tcaaagtgat tttcttcaag
2581 agccgttaca ggcagcaatt cccccaggca agcaaccgtc ttcactagct tctccaaatc
2641 ctcccatggc aaagggctct gaacagggct tccagtcacc tccagcaagt agtagttcag
2701 taaccattaa cacagcaccc tttcaagcca tgcagacagt atttaacgtt aatgcacctc
2761 tgcctccacg aaaagaacaa gaaataaaag aatcccctta ttcacctggc tacaatcaaa
2821 gttttaccac agcaagtaca caaacaccac cccagtgcca actgccatct atacatgtag
2881 aacaaactgt ccattctcaa gagactgcac agacgaatgt gtttcccaga cctactcagc
2941 catttgtcaa tagccgggga tctgttagag gatgtactcg tggtgggaga ttaataacca
3001 attcctatcg gtcccctggt ggttataaag gttttgatac ttatagagga ctcccttcaa
3061 tttccaatgg aaattatagc cagctgcagt tccaagctag agagtattct ggagcacctt
3121 attcccaaag ggataatttc cagcagtgtt ataagcgagg agggacatct ggtggtccac
3181 gagcaaattc gagagctaac tgcttcatta tgagaaactc actgttgcta ataaaacagc
3241 agggtggagt gattcttctc aggtgagcag cccagaaaga gacaacgaaa cctttaacag
3301 tggtgactct ggacaaggag actcccgtag catgacccct gtggatgtgc cagtgacaaa
3361 tccagcagcc
//