LOCUS BC117460 2043 bp mRNA linear HUM 26-JUN-2006
DEFINITION Homo sapiens synapsin III, mRNA (cDNA clone MGC:151069
IMAGE:40126011), complete cds.
ACCESSION BC117460
VERSION BC117460.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2043)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2043)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (26-MAY-2006) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein, NIMH
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 6 Row: O Column: 12.
FEATURES Location/Qualifiers
source 1..2043
/db_xref="H-InvDB:HIT000387748"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:151069 IMAGE:40126011"
/tissue_type="Brain, cerebellum, PCR rescued clones"
/clone_lib="NIH_MGC_311"
/note="Vector: pCR4-TOPO with reversed insert; Clone
identification sequence tag: TTCGAGGT"
gene 1..2043
/gene="SYN3"
/db_xref="GeneID:8224"
/db_xref="HGNC:HGNC:11496"
/db_xref="MIM:602705"
CDS 28..1767
/gene="SYN3"
/codon_start=1
/product="synapsin III"
/protein_id="AAI17461.1"
/db_xref="GeneID:8224"
/db_xref="HGNC:HGNC:11496"
/db_xref="MIM:602705"
/translation="MNFLRRRLSDSSFMANLPNGYMTDLQRPDSSTSSPASPAMERRH
PQPLAASFSSPGSSLFSSLSSAMKQAPQATSGLMEPPGPSTPIVQRPRILLVIDDAHT
DWSKYFHGKKVNGEIEIRVEQAEFSELNLAAYVTGGCMVDMQVVRNGTKVVRSFKPDF
ILVRQHAYSMALGEDYRSLVIGLQYGGLPAVNSLYSVYNFCSKPWVFSQLIKIFHSLG
PEKFPLVEQTFFPNHKPMVTAPHFPVVVKLGHAHAGMGKIKVENQLDFQDITSVVAMA
KTYATTEAFIDSKYDIRIQKIGSNYKAYMRTSISGNWKANTGSAMLEQVAMTERYRLW
VDSCSEMFGGLDICAVKAVHSKDGRDYIIEVMDSSMPLIGEHVEEDRQLMADLVVSKM
SQLPMPGGTAPSPLRPWAPQIKSAKSPGQAQLGPQLGQPQPRPPPQGGPRQAQSPQPQ
RSGSPSQQRLSPQGQQPLSPQSGSPQQQRSPGSPQLSRASSGSSPNQASKPGATLASQ
PRPPVQGRSTSQQGEESKKPAPPHPHLNKSQSLTNSLSTSDTSQRGTPSEDEAKAETI
RNLRKSFASLFSD"
BASE COUNT 470 a 670 c 504 g 399 t
ORIGIN
1 gccagtcatc tccatccatc cacagccatg aatttcctcc ggcgacgtct ctctgacagc
61 agcttcatgg ccaacctgcc taatggctat atgacggacc tgcaacgccc agatagctcc
121 accagctcac ctgcttcccc cgccatggag aggaggcacc cccagcccct ggctgcctcc
181 ttctcctctc caggatccag cctttttagc tccctctcca gtgccatgaa gcaggcccct
241 caggccacct caggactgat ggagcctcca ggtccctcca cgcccattgt tcaaagaccc
301 aggatcctgt tggtgatcga tgatgcccat acagactggt cgaagtattt ccatgggaag
361 aaggtgaatg gagagattga gatccgagtg gagcaggctg aattctcaga gttgaaccta
421 gctgcctatg tgaccggggg ctgcatggtg gacatgcagg tcgtgagaaa tgggaccaaa
481 gtggtgagat ccttcaagcc agacttcatc ctggtccgcc agcatgccta cagcatggcc
541 ctgggggaag actaccgcag cctggtcatc ggcctgcagt atggagggct gcctgctgtc
601 aactctctct actccgtcta caacttctgc agcaagccct gggtgttctc tcagctcatt
661 aagatcttcc attccctggg tcctgagaag ttcccgcttg tggagcaaac atttttcccc
721 aaccataagc caatggtcac agccccacac ttcccggtgg tagtcaagct gggacatgcc
781 cacgctggaa tgggaaagat caaagtggaa aaccagcttg acttccagga catcaccagc
841 gtggtcgcca tggccaaaac ctacgccacc accgaggcct tcatcgactc caagtacgac
901 atccgcatcc agaaaattgg atccaactac aaggcttaca tgagaacctc catctctggg
961 aactggaagg ccaacacagg ctctgccatg ctggagcagg tggccatgac agagaggtac
1021 aggctgtggg tggacagctg ctcggaaatg tttggcggcc tggacatctg tgccgtcaag
1081 gctgtccaca gcaaggatgg cagagattac atcatcgagg taatggacag ctcaatgccg
1141 ctgattggag agcatgtgga agaggacaga cagctgatgg ccgaccttgt tgtctccaaa
1201 atgagccagc tcccgatgcc aggaggcaca gcgccctccc ccctcagacc ttgggctcca
1261 cagattaaat cagcgaaatc cccagggcaa gcccagctgg ggcctcagct aggccagccc
1321 cagccacgcc cacctccgca aggaggccct cgccaagctc agtctcctca gccccagaga
1381 tctggaagcc cctcccaaca gaggctctcc ccacaaggcc agcagcccct gagcccccag
1441 tccggatctc cacagcagca aaggtcacca ggctctccgc agctatcccg ggcatccagt
1501 ggcagctccc caaaccaggc ctccaagcca ggtgccaccc tcgcctcaca gccccggccc
1561 cctgtgcagg gccgtagtac ctcccagcag ggtgaagagt ccaagaagcc agcaccaccc
1621 catccgcatc tcaacaaatc tcagtccctg actaacagcc tcagcacatc cgacacctcc
1681 cagcgtggga ccccaagtga agacgaggcc aaggctgaaa ccatccgcaa cctgaggaag
1741 tcttttgcca gcctgttctc tgactaacgc catccaggct gggaggggaa gagtgctctg
1801 ctacactcgt ccccctcctg cctcatcttc cttctcagcc ttggttcctg atgggaacag
1861 aatggagggc ctgagaacat actttctaaa tgcctttgac ccaggaaccg attatctata
1921 tttgttccca ttttccttca ccgtgacatt ccagcattgt ctgactgtga ggtgggcctt
1981 tgagagcctc caggttcctc aaaacaggcc tgagcgatgg gcatcacacc ctctgcctac
2041 cca
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