LOCUS BC117447 3663 bp mRNA linear HUM 26-JUN-2006
DEFINITION Homo sapiens SWI/SNF related, matrix associated, actin dependent
regulator of chromatin, subfamily a, member 1, mRNA (cDNA clone
MGC:151056 IMAGE:40125998), complete cds.
ACCESSION BC117447
VERSION BC117447.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3663)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3663)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (26-MAY-2006) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein, NIMH
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 6 Row: N Column: 23.
FEATURES Location/Qualifiers
source 1..3663
/db_xref="H-InvDB:HIT000387735"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:151056 IMAGE:40125998"
/tissue_type="Lung, PCR rescued clones"
/clone_lib="NIH_MGC_299"
/note="Vector: pCR4-TOPO with reversed insert; Clone
identification sequence tag: GGAAAAGC"
gene 1..3663
/gene="SMARCA1"
/gene_synonym="NURF140"
/gene_synonym="SNF2LB"
/gene_synonym="SWI2"
/db_xref="GeneID:6594"
/db_xref="HGNC:HGNC:11097"
/db_xref="MIM:300012"
CDS 36..3200
/gene="SMARCA1"
/gene_synonym="NURF140"
/gene_synonym="SNF2LB"
/gene_synonym="SWI2"
/codon_start=1
/product="SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 1"
/protein_id="AAI17448.1"
/db_xref="GeneID:6594"
/db_xref="HGNC:HGNC:11097"
/db_xref="MIM:300012"
/translation="MEQDTAAVAATVAAADATATIVVIEDEQPGPSTSQEEGAAAAAT
EATAATEKGEKKKEKNVSSFQLKLAAKAPKSEKEMDPEYEEKMKADRAKRFEFLLKQT
ELFAHFIQPSAQKSPTSPLNMKLGRPRIKKDEKQSLISAGDYRHRRTEQEEDEELLSE
SRKTSNVCIRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQT
IALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRD
EMMPGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTN
RLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERLHAVLK
PFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLL
NILMQLRKCCNHPYLFDGAEPGPPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIF
SQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVEFLGQREAIEAFNAPNSS
KFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLIT
DNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKLAKEEMLQMIRHGATHVFASKES
ELTDEDITTILERGEKKTAEMNERLQKMGESSLRNFRMDIEQSLYKFEGEDYREKQKL
GMVEWIEPPKRERKANYAVDAYFREALRVSEPKIPKAPRPPKQPNVQDFQFFPPRLFE
LLEKEILYYRKTIGYKVPRNPDIPNPALAQREEQKKIDGAEPLTPEETEEKEKLLTQG
FTNWTKRDFNQFIKANEKYGRDDIDNIAREVEGKSPEEVMEYSAVFWERCNELQDIEK
IMAQIERGEARIQRRISIKKALDAKIARYKAPFHQLRIQYGTSKGKNYTEEEDRFLIC
MLHKMGFDRENVYEELRQCVRNAPQFRFDWFIKSRTAMEFQRRCNTLISLIEKENMEI
EERERAEKKKRATKTPMVKFSAFS"
BASE COUNT 1184 a 663 c 831 g 985 t
ORIGIN
1 tgccttgtcc ccctactcgt tcccgctccc acggcatgga gcaggacact gccgcagtgg
61 cagccaccgt ggcagccgcg gatgcgaccg ccactatcgt ggtcatagag gacgagcagc
121 ccgggccgtc cacctctcag gaggagggag cggccgccgc ggccaccgaa gccaccgcgg
181 ccacggagaa gggcgagaag aagaaggaga aaaacgtttc ttcatttcaa ctcaaacttg
241 ctgctaaagc gcctaaatct gaaaaggaaa tggacccaga atatgaagag aaaatgaaag
301 ccgaccgagc aaagagattt gaatttttac tgaagcagac agaacttttt gcacatttca
361 ttcagccttc agcacagaaa tctccaacat ctccactgaa catgaaattg ggacgtcccc
421 gaataaagaa agatgaaaag cagagcttaa tttctgctgg agactaccgc cataggcgca
481 cagagcaaga agaagatgaa gagctactgt ctgagagtcg gaaaacatct aatgtgtgta
541 ttagatttga ggtgtcacct tcatatgtga aaggggggcc actgagagat tatcagattc
601 gaggactgaa ttggttgatc tctttatatg aaaatggagt caatggcatt ttggctgatg
661 aaatgggcct tgggaaaact ttacaaacaa ttgctttgct tggttacctg aaacactacc
721 gaaatattcc tggacctcac atggttttag ttccaaagtc tactttacac aactggatga
781 atgaatttaa acgatgggtc ccatctctcc gtgtcatttg ttttgtcgga gacaaggatg
841 ccagagctgc ttttattcgt gatgaaatga tgccaggaga gtgggatgtt tgcgttactt
901 cttatgagat ggtaattaaa gaaaaatctg tattcaaaaa gtttcactgg cgatacctgg
961 tcattgatga agctcacaga ataaagaatg aaaaatctaa gctttcagag attgttcgtg
1021 agttcaagtc gactaaccgc ttgctcctaa ctggaacacc tttgcagaat aacctgcatg
1081 aactgtgggc cttactcaac tttttattgc ctgatgtctt taattctgca gatgactttg
1141 attcttggtt tgacactaaa aattgtcttg gtgatcaaaa actcgtggaa agacttcatg
1201 cagttttaaa accatttttg ttacgccgta taaaaactga tgtagagaag agtctgccac
1261 ctaaaaagga aataaagatt tacttggggc tgagtaagat gcaacgagaa tggtatacaa
1321 aaatcctgat gaaagatatt gatgttttaa actcttctgg caagatggac aagatgcgac
1381 tcttaaacat tctgatgcag cttcgaaagt gttgtaatca tccatatctg tttgatggtg
1441 ctgaacctgg tccaccttat accactgatg agcatattgt cagcaacagt ggtaaaatgg
1501 tagttctgga taaactattg gccaaactca aagaacaggg ttcaagggtt ctcattttca
1561 gccagatgac tcgcttgctg gatattttgg aagattattg catgtggcgt ggttatgagt
1621 attgtcgact ggatggacaa accccgcatg aagaaagaga ggataaattc ctagaagtgg
1681 aatttctggg tcaaagggaa gcaatagagg cttttaatgc tcctaatagt agcaaattca
1741 tctttatgct aagtaccagg gctggaggtc tcggaattaa cctggcaagt gctgatgtgg
1801 ttatactata tgattcagac tggaacccac aggttgatct acaagctatg gatcgagcac
1861 atcgtattgg tcagaagaaa ccagtacgtg tattccgtct catcactgac aacactgttg
1921 aagagaggat tgtagaaaga gctgagataa aactgagact cgattcaatt gttatacaac
1981 aaggaagact cattgaccaa cagtctaaca agctggcaaa agaggaaatg ttacaaatga
2041 tacggcatgg agccacccat gtttttgctt ctaaagagag tgagttgaca gatgaagaca
2101 ttacaactat tctggaaaga ggggaaaaga agactgcaga gatgaatgaa cgcctgcaaa
2161 aaatgggaga gtcttctcta agaaatttta gaatggacat tgaacaaagt ttatacaaat
2221 ttgagggaga agattataga gaaaaacaga agcttggcat ggtggaatgg attgaacctc
2281 ctaaacgaga acgcaaagca aactacgcag tggatgccta ctttagagag gctttgcgtg
2341 tcagcgagcc aaagattcca aaggctccac ggcctccaaa acagccaaat gttcaggatt
2401 ttcaattttt cccaccacgc ttatttgagc tcctggaaaa ggaaattctt tattatcgga
2461 agacaatagg ctataaggtt ccaaggaatc ctgatatccc aaatccagct ctggctcaaa
2521 gagaagagca aaaaaagatt gatggagctg aacctcttac accagaagag actgaagaaa
2581 aggaaaaact tctcacacaa ggtttcacaa actggactaa acgagatttt aaccagttta
2641 ttaaagctaa tgagaaatat ggaagagatg acattgataa catagctcga gaggtagagg
2701 gcaaatcccc tgaggaggtc atggagtatt cagctgtatt ttgggaacgt tgcaatgaat
2761 tacaggacat tgagaaaatt atggctcaaa ttgaacgtgg agaagcaaga attcaacgaa
2821 ggatcagtat caagaaagcc ctggatgcca aaattgcaag atacaaggct ccatttcatc
2881 agttgcgcat tcagtatgga accagcaaag gaaagaacta tactgaggaa gaagatagat
2941 tcttgatttg tatgttacac aaaatgggct ttgatagaga aaatgtatat gaagaattaa
3001 gacagtgtgt acgaaatgct ccccagttta gatttgactg gtttatcaag tctaggactg
3061 ccatggaatt ccagagacgc tgtaacactc tgatttcatt gattgagaaa gaaaatatgg
3121 aaattgagga aagagagaga gcagaaaaga agaaacgggc aactaaaact ccaatggtaa
3181 aattttcagc attttcctaa cttttagatt taacattgtt gggccattta aaatgtgcat
3241 attggagcag aacattaaat ctgtttccat tttagtcaca gaaaagaaaa gcagagtcag
3301 ctactgagag ctctggaaag aaggatgtca agaaggtgaa atcctaaagc ctagaaataa
3361 agttttaaat gggaaactgc tattttcttg ttcccatctt caaatgctaa ttgccagttc
3421 cagtgtattc atggtactct aagaaaaatc tctttggttt tgatttcttg catattttat
3481 atattttaca atgctttcta cctgaaatgt gtagctttat attttatggc attctagtat
3541 ttttgtgtac tgtattttgt gcatttcatg tcttcatcaa aatcctctca gtccttgttc
3601 ttttgaagct tgtgctgagg ttttagcttt tctatgtttt atatgccgct gctttgaaag
3661 aga
//