LOCUS BC117439 1072 bp mRNA linear HUM 26-JUN-2006 DEFINITION Homo sapiens C-type lectin domain family 4, member A, mRNA (cDNA clone MGC:151048 IMAGE:40125990), complete cds. ACCESSION BC117439 VERSION BC117439.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1072) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1072) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (26-MAY-2006) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Mike Brownstein, NIMH cDNA Library Preparation: British Columbia Cancer Research Center cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRCB Plate: 6 Row: N Column: 15. FEATURES Location/Qualifiers source 1..1072 /db_xref="H-InvDB:HIT000387727" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:151048 IMAGE:40125990" /tissue_type="Lung, PCR rescued clones" /clone_lib="NIH_MGC_299" /note="Vector: pCR4-TOPO with reversed insert; Clone identification sequence tag: GGAGGCCC" gene 1..1072 /gene="CLEC4A" /gene_synonym="DCIR" /gene_synonym="DDB27" /gene_synonym="HDCGC13P" /gene_synonym="LLIR" /db_xref="GeneID:50856" /db_xref="HGNC:HGNC:13257" /db_xref="MIM:605306" CDS 143..856 /gene="CLEC4A" /gene_synonym="DCIR" /gene_synonym="DDB27" /gene_synonym="HDCGC13P" /gene_synonym="LLIR" /codon_start=1 /product="C-type lectin domain family 4, member A" /protein_id="AAI17440.1" /db_xref="GeneID:50856" /db_xref="HGNC:HGNC:13257" /db_xref="MIM:605306" /translation="MTSEITYAEVRFKNEFKSSGINTASSAASKERTAPLKSNTGFPK LLCASLLIFFLLLAISFFIAFVIFFQKYSQLLEKKTTKELVHTTLECVKKNMPVEETA WSCCPKNWKSFSSNCYFISTESASWQDSEKDCARMEAHLLVINTQEEQDFIFQNLQEE SAYFVGLSDPEGQRHWQWVDQTPYNESSTFWHPREPSDPNERCVVLNFRKSPKRWGWN DVNCLGPQRSVCEMMKIHL" BASE COUNT 302 a 209 c 233 g 328 t ORIGIN 1 tgcctatctg gtgcctctgc tctccactag ttgagtgaaa ggaaggaggt aatttaccac 61 catgtttggt tcctgtttat aagatgtttt aagaaagatt tgaaacagat tttctgaaga 121 aagcagaagc tctcttccca ttatgacttc ggaaatcact tatgctgaag tgaggttcaa 181 aaatgaattc aagtcctcag gcatcaacac agcctcttct gcagcttcca aggagaggac 241 tgcccctctc aaaagtaata ccggattccc caagctgctt tgtgcctcac tgttgatatt 301 tttcctgcta ttggcaatct cattctttat tgcttttgtc attttctttc aaaaatattc 361 tcagcttctt gaaaaaaaga ctacaaaaga gctggttcat acaacattgg agtgtgtgaa 421 aaaaaatatg cccgtggaag agacagcctg gagctgttgc ccaaagaatt ggaagtcatt 481 tagttccaac tgctacttta tttctactga atcagcatct tggcaagaca gtgagaagga 541 ctgtgctaga atggaggctc acctgctggt gataaacact caagaagagc aggatttcat 601 cttccagaat ctgcaagaag aatctgctta ttttgtgggg ctctcagatc cagaaggtca 661 gcgacattgg caatgggttg atcagacacc atacaatgaa agttccacat tctggcatcc 721 acgtgagccc agtgatccca atgagcgctg cgttgtgcta aattttcgta aatcacccaa 781 aagatggggc tggaatgatg ttaattgtct tggtcctcaa aggtcagttt gtgagatgat 841 gaagatccac ttatgaactg aacattctcc atgaacaggt ggttggattg gtatctgtca 901 ttgtagggat agataataag ctcttcttat tcatgtgtaa gggaggtcca tagaatttag 961 gtggtctgtc aactattcta cttatgagag aattggtctg tacattgact gattcacttt 1021 ttcataaagt gagcatttat tgagcatttt ttcatgtgcc agagcctgta ct //