LOCUS BC117213 3424 bp mRNA linear HUM 26-JUN-2006
DEFINITION Homo sapiens SWI/SNF related, matrix associated, actin dependent
regulator of chromatin, subfamily c, member 1, mRNA (cDNA clone
MGC:150822 IMAGE:40125764), complete cds.
ACCESSION BC117213
VERSION BC117213.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3424)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3424)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (26-MAY-2006) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein, NIMH
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 6 Row: E Column: 5.
FEATURES Location/Qualifiers
source 1..3424
/db_xref="H-InvDB:HIT000387503"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:150822 IMAGE:40125764"
/tissue_type="Brain, cerebral cortex, PCR rescued clones"
/clone_lib="NIH_MGC_287"
/note="Vector: pCR4-TOPO with reversed insert; Clone
identification sequence tag: CTCTTCAC"
gene 1..3424
/gene="SMARCC1"
/gene_synonym="BAF155"
/gene_synonym="CRACC1"
/gene_synonym="Rsc8"
/gene_synonym="SRG3"
/gene_synonym="SWI3"
/db_xref="GeneID:6599"
/db_xref="HGNC:HGNC:11104"
/db_xref="MIM:601732"
CDS 67..3384
/gene="SMARCC1"
/gene_synonym="BAF155"
/gene_synonym="CRACC1"
/gene_synonym="Rsc8"
/gene_synonym="SRG3"
/gene_synonym="SWI3"
/codon_start=1
/product="SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily c, member 1"
/protein_id="AAI17214.1"
/db_xref="GeneID:6599"
/db_xref="HGNC:HGNC:11104"
/db_xref="MIM:601732"
/translation="MAAAAGGGGPGTAVGATGSGIAAAAAGLAVYRRKDGGPATKFWE
SPETVSQLDSVRVWLGKHYKKYVHADAPTNKTLAGLVVQLLQFQEDAFGKHVTNPAFT
KLPAKCFMDFKAGGALCHILGAAYKYKNEQGWRRFDLQNPSRMDRNVEMFMNIEKTLV
QNNCLTRPNIYLIPDIDLKLANKLKDIIKRHQGTFTDEKSKASHHIYPYSSSQDDEEW
LRPVMRKEKQVLVHWGFYPDSYDTWVHSNDVDAEIEDPPIPEKPWKVHVKWILDTDIF
NEWMNEEDYEVDENRKPVSFRQRISTKNEEPVRSPERRDRKASANARKRKHSPSPPPP
TPTESRKKSGKKGQASLYGKRRSQKEEDEQEDLTKDMEDPTPVPNIEEVVLPKNVNLK
KDSENTPVKGGTVADLDEQDEETVTAGGKEDEDPAKGDQSRSVDLGEDNVTEQTNHII
IPSYASWFDYNCIHVIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTS
TACRRNLTGDVCAVMRVHAFLEQWGLVNYQVDPESRPMAMGPPPTPHFNVLADTPSGL
VPLHLRSPQVPAAQQMLNFPEKNKEKPVDLQNFGLRTDIYSKKTLAKSKGASAGREWT
EQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLENSDASLGPLA
YQPVPFSQSGNPVMSTVAFLASVVDPRVASAAAKAALEEFSRVREEVPLELVEAHVKK
VQEAARASGKVDPTYGLESSCIAGTGPDEPEKLEGAEEEKMEADPDGQQPEKAENKVE
NETDEGDKAQDGENEKNSEKEQDSEVSEDTKSEEKETEENKELTDTCKERESDTGKKK
VEHEISEGNVATAAAAALASAATKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHF
EELETIMDREKEALEQQRQQLLTERQNFHMEQLKYAELRARQQMEQQQHGQNPQQAHQ
HSGGPGLAPLGAAGHPGMMPHQQPPPYPLMHHQMPPPHPPQPGQIPGPGSMMPGQHMP
GRMIPTVAANIHPSGSGPTPPGMPPMPGNILGPRVPLTAPNGMYPPPPQQQPPPPPPA
DGVPPPPAPGPPASAAP"
BASE COUNT 1030 a 801 c 892 g 701 t
ORIGIN
1 gggaacgacc gggaaacacc gcgagggccg gggtgggcca ggctgtgggg acgacgggct
61 gcgacgatgg ccgcagcggc gggcggcggc gggccgggga cagcggtagg cgccacgggc
121 tcggggattg cggcggcagc cgcaggccta gctgtttatc gacggaagga tgggggcccg
181 gccaccaagt tttgggagag cccggagacg gtgtcccagc tggattcggt gcgggtctgg
241 ctgggcaagc actacaagaa gtatgttcat gcggatgctc ctaccaataa aacactggct
301 gggctggtgg tgcagcttct tcagttccag gaagatgcct ttgggaagca tgtcaccaac
361 ccggccttca ccaaactccc tgcaaagtgt ttcatggatt tcaaagctgg aggcgcctta
421 tgtcacattc ttggggctgc ttacaagtat aaaaatgaac agggatggcg gaggtttgac
481 ctacagaacc catctcgaat ggatcgtaat gtggaaatgt ttatgaacat tgaaaaaaca
541 ttggtgcaga acaattgttt gaccagaccc aacatctacc tcattccaga cattgatctg
601 aagttggcta acaaattgaa agatatcatc aaacgacatc agggaacatt tacggatgag
661 aagtcaaaag cttcccacca catttaccca tattcttcct cacaagacga tgaagaatgg
721 ttgagaccgg tgatgagaaa agagaagcaa gtgttagtgc attggggctt ttacccagac
781 agctatgata cttgggtcca tagtaatgat gttgatgctg aaattgaaga tccaccaatt
841 ccagaaaaac catggaaggt tcatgtgaaa tggattttgg acactgatat tttcaatgaa
901 tggatgaatg aggaggatta tgaggtggat gaaaatagga agcctgtgag ttttcgtcag
961 cggatttcaa ccaagaatga agagccagtc agaagtccag aaagaagaga tagaaaagca
1021 tcagctaatg ctcgaaagag gaaacattcg ccttcgcctc cccctccgac accaacagaa
1081 tcacggaaga agagtgggaa gaaaggccaa gctagccttt atgggaagcg cagaagtcag
1141 aaagaggaag atgagcaaga agatctaacc aaggatatgg aagacccaac acctgtaccc
1201 aatatagaag aagtagtact tcccaaaaat gtgaacctaa agaaagatag tgaaaataca
1261 cctgttaaag gaggaactgt agcggatcta gatgagcagg atgaagaaac agtcacagca
1321 ggaggaaagg aagatgaaga tcctgccaaa ggtgatcaga gtcgatcagt tgaccttggg
1381 gaagataatg tgacagagca gaccaatcac attattattc ctagttatgc atcatggttt
1441 gattataact gtattcatgt gattgaacgg cgtgctcttc ctgagttctt caatggaaaa
1501 aacaaatcca agactccaga aatatacttg gcatatcgaa attttatgat tgacacgtat
1561 cgtctaaacc cccaagagta tttaactagc actgcttgtc ggaggaactt gactggagat
1621 gtgtgtgctg tgatgagggt ccatgccttt ttagagcagt ggggactcgt taattaccaa
1681 gttgacccgg aaagtagacc catggcaatg ggacctcctc ctactcctca ttttaatgta
1741 ttagctgata ccccctctgg gcttgtgcct ctgcatcttc gatcacctca ggttcctgct
1801 gctcaacaga tgctaaattt tcctgagaaa aacaaggaaa aaccagttga tttgcagaac
1861 tttggtctcc gtactgacat ttactccaag aaaacattag caaagagtaa aggtgctagt
1921 gctggaagag aatggactga acaggagacc cttctactcc tggaggccct ggagatgtac
1981 aaggatgatt ggaacaaagt gtcggaacat gttggaagtc gtactcagga tgaatgcatc
2041 ctccactttt tgagacttcc cattgaggac ccataccttg agaattcaga tgcttccctt
2101 gggcctttgg cctaccagcc tgtccccttc agtcagtcag gaaatccagt tatgagtact
2161 gttgcttttt tggcatctgt ggtggaccct cgcgtggcat ctgctgcagc aaaagcggct
2221 ttggaggagt tttctcgggt ccgggaggag gtaccactgg aattggttga agctcatgtc
2281 aagaaagtac aagaagcagc acgagcctct gggaaagtgg atcccaccta cggtctggag
2341 agcagctgca ttgcaggcac agggcccgat gagccagaga agcttgaagg agctgaagag
2401 gaaaaaatgg aagccgaccc tgatggtcag cagcctgaaa aggcagaaaa taaagtggaa
2461 aatgaaacgg atgaaggtga taaagcacaa gatggagaaa atgaaaaaaa tagtgaaaag
2521 gaacaggata gtgaagtgag tgaggatacc aaatcagaag aaaaggagac tgaagagaac
2581 aaagaactca ctgatacatg taaagaaaga gaaagtgata ctgggaagaa gaaagtagaa
2641 catgaaattt ccgaaggaaa tgttgccaca gccgcagcag ctgctcttgc ctcagcggct
2701 accaaagcca agcacctggc tgcagtggaa gaaagaaaga tcaagtccct ggtagctctc
2761 ttggttgaga cacaaatgaa gaaactagag atcaaacttc gacattttga agagctggaa
2821 actatcatgg acagagagaa agaagctcta gaacaacaga ggcagcagtt gcttactgaa
2881 cgccaaaact tccacatgga acagctgaag tatgctgaat tacgagcacg acagcaaatg
2941 gaacagcagc agcatggcca gaaccctcaa caggcacacc agcactcagg aggacctggc
3001 ctggccccac ttggagcagc agggcaccct ggcatgatgc ctcatcaaca gccccctccc
3061 taccctctga tgcaccacca gatgccacca cctcatccac cccagccagg tcagatacca
3121 ggcccaggtt ccatgatgcc cgggcagcac atgccaggcc gcatgattcc cactgttgca
3181 gccaacatcc acccctctgg gagtggccct acccctcctg gcatgccacc aatgccagga
3241 aacatcttag gaccccgggt acccctgaca gcacctaacg gcatgtatcc ccctccacca
3301 cagcagcagc caccgccacc accacctgca gatggggtcc ctccgcctcc tgctcctggc
3361 ccgccagcct cagctgctcc ttagcctgga agatgcaggg aacctccacg cccaccacca
3421 tgag
//