LOCUS BC117170 5225 bp mRNA linear HUM 12-OCT-2006
DEFINITION Homo sapiens collagen, type XXIV, alpha 1, mRNA (cDNA clone
MGC:150779 IMAGE:40125721), complete cds.
ACCESSION BC117170
VERSION BC117170.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5225)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 5225)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (26-MAY-2006) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 6 Row: C Column: 10.
FEATURES Location/Qualifiers
source 1..5225
/db_xref="H-InvDB:HIT000387460"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:150779 IMAGE:40125721"
/tissue_type="Cerebellum, Lung, PCR rescued clones"
/clone_lib="NIH_MGC_348"
/lab_host="DH10B"
/note="Vector: pCR-XL-TOPO with reversed insert; Clone
identification sequence tag: TCCCCATG"
gene 1..5225
/gene="COL24A1"
/db_xref="GeneID:255631"
/db_xref="HGNC:HGNC:20821"
/db_xref="MIM:610025"
CDS 40..5184
/gene="COL24A1"
/codon_start=1
/product="collagen, type XXIV, alpha 1"
/protein_id="AAI17171.1"
/db_xref="GeneID:255631"
/db_xref="HGNC:HGNC:20821"
/db_xref="MIM:610025"
/translation="MHLRAHRTRRGKVSPTAKTKSLLHFIVLCVAGVVVHAQEQGIDI
LHQLGLGGKDVRHSSPVTAVPSASTPLPQGVHLTESGVIFKNDAYIETPFVKILPVNL
GQPFTILTGLQSHRVNNAFLFSIRNKNRLQLGVQLLPKKLVVHIRGKQPAVFNYSVHD
EQWHSFAITIRNQSVSMFVECGKKYFSTETIPEVQTFDSNSVFTLGSMNNNSIHFEGI
VCQLDIIPSAEASADYCRYVKQQCRQADKYQPETSIPCTTLIPTKIPEHSPPPKLFAE
KVLSEDTFTEGKSIPNIIKNDSETVYKRQEHQISRSQLSSLQSGNVSAVDLTNHGIQA
KEMITEEDTQTNFSLSVTTHRISEAKMNTKEKFSSLLNMSDNITQHDDRVTGLSLFKK
MPSILPQIKQDTITNLKKAITANLHTNELMEMQPILNTSLHRVTNEPSVDNHLDLRKE
GEFYPDATYPIENSYETELYDYYYYEDLNTMLEMEYLRGPKGDTGPPGPPGPAGIPGP
SGKRGPRGIPGPHGNPGLPGLPGPKGPKGDPGFSPGQPVPGEKGDQGLSGLMGPPGMQ
GDKGLKGHPGLPGLPGEQGIPGFAGNIGSPGYPGRQGLAGPEGNPGPKGAQGFIGSPG
EAGQLGPEGERGIPGIRGKKGFKGRQGFPGDFGDRGPAGLDGSPGLVGGTGPPGFPGL
RGSVGPVGPIGPAGIPGPMGLSGNKGLPGIKGDKGEQGTAGELGEPGYPGDKGAVGLP
GPPGMRGKSGPSGQTGDPGLQGPSGPPGPEGFPGDIGIPGQNGPEGPKGLLGNRGPPG
PPGLKGTQGEEGPIGAFGELGPRGKPGQKGYAGEPGPEGLKGEVGDQGNIGKIGETGP
VGLPGEVGMTGSIGEKGERGSPGPLGPQGEKGVMGYPGPPGVPGPIGPLGLPGHVGAR
GPPGSQGPKGQRGSRGPDGLLGEQGIQGAKGEKGDQGKRGPHGLIGKTGNPGERGFQG
KPGLQGLPGSTGDRGLPGEPGLRGLQGDVGPPGEMGMEGPPGTEGESGLQGEPGAKGD
VGTAGSVGGTGEPGLRGEPGAPGEEGLQGKDGLKGVPGGRGLPGEDGEKGEMGLPGII
GPLGRSGQTGLPGPEGIVGIPGQRGRPGKKGDKGQIGPTGEVGSRGPPGKIGKSGPKG
ARGTRGAVGHLGLMGPDGEPGIPGYRGHQGQPGPSGLPGPKGEKGYPGEDSTVLGPPG
PRGEPGPVGDQGERGEPGAEGYKGHVGVPGLRGATGQQGPPGEPGDQGEQGLKGERGS
EGNKGKKGAPGPSGKPGIPGLQGLLGPKGIQGYHGADGISGNPGKIGPPGKQGLPGIR
GGPGRTGLAGAPGPPGVKGSSGLPGSPGIQGPKGEQGLPGQPGIQGKRGHRGAQGDQG
PCGDPGLKGQPGEYGVQGLTGFQGFPGPKGPEGDAGIVGISGPKGPIGHRGNTGPLGR
EGIIGPTGRTGPRGEKGFRGETGPQGPRGQPGPPGPPGAPGPRKQMDINAAIQALIES
NTALQMESYQNTEVTLIDHSEEIFKTLNYLSNLLHSIKNPLGTRDNPARICKDLLNCE
QKVSDGKYWIDPNLGCPSDAIEVFCNFSAGGQTCLPPVSVTKLEFGVGKVQMNFLHLL
SSEATHIITIHCLNTPRWTSTQTSGPGLPIGFKGWNGQIFKVNTLLEPKVLSDDCKIQ
DGSWHKATFLFHTQEPNQLPVIEVQKLPHLKTERKYYIDSSSVCFL"
BASE COUNT 1610 a 1081 c 1402 g 1132 t
ORIGIN
1 tttccgttag cgctttgctg cacggacaaa tgcatacaaa tgcatttaag agcccacaga
61 acaaggcgtg gaaaagtctc ccccacggca aaaacgaaat cacttcttca ttttattgta
121 ctatgtgtgg ctggggtggt tgttcatgca caagaacaag gcatagatat tcttcatcaa
181 ctaggccttg gaggcaaaga cgtaagacac tcatcaccag tgactgctgt accatcagca
241 tctacaccgt tacctcaggg ggtccattta acagaatcag gagtcatttt taaaaatgat
301 gcttatatcg agacaccttt cgtgaaaatt ttaccagtca acttggggca gccgtttaca
361 atattaactg ggttacagtc acatcgggtg aacaatgcat ttctcttcag cattagaaat
421 aaaaatagac tgcaattagg agtacaatta ctacctaaaa aattagtagt acacattaga
481 ggaaagcagc ctgcagtttt caactacagt gttcatgatg agcaatggca ctcatttgcc
541 attactatta gaaaccaaag tgtctcaatg tttgttgagt gtggaaagaa atattttagc
601 acagagacta ttccagaagt tcagaccttt gattctaata gtgtgtttac tttaggaagt
661 atgaataata attctatcca ttttgaagga atagtatgtc agttagatat tattccttct
721 gcagaagcat ctgcagacta ctgcagatat gtgaaacagc agtgtcgcca agcagacaaa
781 taccaacctg aaacaagcat tccttgtaca actctcatac caacaaagat accggaacac
841 tctcccccgc ccaaactatt tgctgaaaaa gtactgtcag aggatacatt tactgaaggc
901 aaaagcattc caaatatcat aaaaaatgat tctgaaaccg tgtataaaag acaagaacac
961 cagatatcaa gatctcagtt atcttctctt cagtcaggaa atgtctctgc tgtggatctc
1021 acaaaccatg ggattcaggc caaagaaatg atcactgagg aagatactca gacaaatttc
1081 agcctgtcag tgaccactca tcgcatcagt gaggcaaaaa tgaataccaa agagaaattt
1141 agttctctcc taaacatgtc tgacaatatc acacaacatg atgatagagt aactggtctg
1201 tcactgttta agaagatgcc atctattctt ccacaaatta aacaagatac aattactaat
1261 ctcaagaagg ctatcacagc aaatctacac actaacgaac tcatggaaat gcaaccaatt
1321 ttaaacacaa gcttgcatag agtgacaaat gagccatctg tggataatca ccttgatcta
1381 aggaaagaag gtgaatttta tcctgatgct acttatccca tcgaaaatag ctatgaaact
1441 gagctttatg attattatta ttatgaggat ctaaatacaa tgcttgaaat ggagtatctg
1501 agagggccaa aaggagacac tggacctccc ggtccacctg gtccagcagg tatcccaggt
1561 ccgtcaggga agagaggtcc acggggcata ccagggccac atggaaatcc tggtttacct
1621 ggattacctg gtccaaaggg ccccaaagga gatccaggat tttccccagg tcaacctgtt
1681 cctggagaaa agggtgatca aggcctttct ggattaatgg gcccccctgg tatgcaaggt
1741 gataagggtc tcaaaggaca tcctggactc ccaggacttc caggtgaaca aggaattcca
1801 ggatttgctg gtaatattgg ttcacccggt taccctggca ggcagggttt agctggacca
1861 gaaggtaatc caggtcctaa aggtgcacaa ggttttattg gctctcctgg agaagcggga
1921 caactgggac ctgaaggaga acggggcatt cctgggatcc gtggaaagaa gggttttaag
1981 gggagacagg gttttccagg tgactttgga gacagaggcc ctgctggtct tgatggcagt
2041 cctggacttg taggtggcac tggtcctccg gggtttcctg ggcttagagg cagtgttggc
2101 cctgtgggac caattggacc tgctggaatt cctggcccaa tgggcctttc agggaataaa
2161 ggactacctg gaatcaaagg tgataagggt gaacaaggca cagcaggaga gctaggagaa
2221 cccgggtatc ctggagacaa gggtgctgtt ggtttaccag gaccaccagg gatgagagga
2281 aagtcagggc cttcaggcca aacaggtgac ccaggactcc aaggaccatc tggccctcca
2341 ggaccagagg gttttccagg agatattggg attcctggac aaaacggccc tgaaggacca
2401 aagggactcc ttggaaatag aggacctcct ggacctcctg gtctcaaagg aactcaggga
2461 gaagaaggac caattggagc ctttggggaa ctggggccaa gaggaaaacc aggtcaaaag
2521 gggtatgcag gtgaaccagg accagaaggc ttaaagggag aagtaggaga tcaaggaaat
2581 attggaaaaa ttggtgaaac aggacctgtt ggcttacctg gagaagttgg gatgactgga
2641 agcattggcg aaaagggaga acgtggaagt ccaggcccac taggtccgca gggagaaaaa
2701 ggtgttatgg gatatccagg tcctcctggg gttccaggac ctatcggtcc attgggatta
2761 cctggtcatg tgggggcaag aggaccacct gggagtcaag gtcctaaagg acaaagagga
2821 tcaagaggac cagatggtct cttaggggaa caaggtatac aaggtgccaa gggtgaaaaa
2881 ggagatcaag gaaaaagagg gcctcatggt cttattggta agactggaaa ccctggagaa
2941 agaggatttc aagggaaacc aggtttacag ggattgcctg gaagtacagg tgacagagga
3001 cttccaggag agccaggact gcgaggactg caaggtgatg ttggacctcc tggagaaatg
3061 ggcatggagg gacctccagg cactgaggga gagtctggtc tgcaaggtga accaggtgca
3121 aagggagatg ttggaactgc tggcagtgtt ggaggaactg gggaaccagg tttacggggt
3181 gaaccaggag ctcctggaga agaaggtctc cagggaaaag atgggttaaa gggagtacca
3241 ggaggaaggg gacttcctgg agaggatgga gaaaaaggag agatgggctt accaggaatt
3301 ataggaccct tgggtagatc aggccaaaca ggccttccgg gacctgaagg aattgtggga
3361 attccagggc aaagaggtcg tccaggaaaa aagggtgata aaggacaaat aggacccaca
3421 ggagaagttg gaagcagagg tcctcctgga aaaattggga aaagtggtcc taagggtgcc
3481 agaggaacta gaggtgctgt gggacattta ggattgatgg gacctgatgg agaaccagga
3541 attccagggt acaggggcca tcagggccaa ccaggaccct ctggattgcc aggacctaaa
3601 ggagaaaagg gctacccagg agaagatagc acagtcctag gaccacctgg gcctcgaggt
3661 gaaccaggtc cagtggggga ccaaggagag agaggagagc ctggagcaga gggatataag
3721 ggccatgtgg gtgtaccagg actaagaggt gccactggac aacaaggacc cccaggcgaa
3781 ccaggtgacc agggtgaaca aggactaaaa ggagagagag gatctgaagg taataagggg
3841 aaaaaaggag ctcctggtcc ttctgggaaa cctgggattc ctggacttca aggcctactt
3901 gggccaaaag gcatacaagg ataccatgga gcagatggca tttcaggaaa ccctggaaaa
3961 attgggccac caggaaaaca gggacttcct ggcatcagag gcggcccagg aagaacaggt
4021 cttgctgggg ctccaggtcc tccaggagta aagggttcat caggcttgcc aggaagccca
4081 ggaattcaag gcccaaaggg tgaacaaggg ctacctggtc aacctggaat tcaaggtaaa
4141 agaggtcacc gaggagcaca aggtgatcaa ggaccatgtg gagaccctgg cctgaaaggg
4201 cagcctggag aatatggtgt tcaaggtttg acaggtttcc aaggattccc aggccctaaa
4261 ggtcctgaag gggatgctgg cattgttggg atatcaggtc ctaaaggtcc tattggacac
4321 agaggaaaca ctggtcccct tggcagagaa ggtataatag gcccaacagg tagaactgga
4381 cccagaggtg aaaagggctt tagaggtgaa actggtcctc aaggaccaag aggtcaacca
4441 gggcctccag gtccacctgg agcaccaggc ccaagaaagc aaatggatat caatgctgct
4501 attcaagcct tgattgaatc aaatactgcc ctacagatgg agagctacca gaatactgaa
4561 gtgactttaa ttgaccacag tgaagagata ttcaaaaccc tgaactacct tagcaattta
4621 ttgcacagca tcaagaatcc tcttggcaca cgagataacc cagcacgaat ctgcaaagat
4681 ttacttaact gtgaacaaaa agtatcagat ggaaaatact ggattgaccc aaatcttggc
4741 tgtccttcag atgccattga ggttttctgc aatttcagtg ctggtggcca gacatgctta
4801 cctcctgttt ctgtaacaaa gttggagttt ggagttggga aagtccagat gaacttcctt
4861 catttactga gttcggaagc cacccatatc atcaccattc actgtctaaa caccccaagg
4921 tggacaagca cacaaacaag tggcccagga ttgcctattg gtttcaaggg atggaatggc
4981 cagattttta aagtaaacac tctacttgaa cctaaagtgc tttcagatga ctgcaagatt
5041 caagatggca gctggcataa ggcaacattt ctttttcaca cccaggaacc taatcaactt
5101 ccagtgattg aagtacaaaa acttcctcat ctcaaaactg aacgaaagta ttacattgac
5161 agcagttctg tatgctttct gtaaagtctc tgaattagtt ccgaattcag gctgttggcc
5221 aggta
//