LOCUS BC117164 6936 bp mRNA linear HUM 26-JUN-2006 DEFINITION Homo sapiens SET domain containing 2, mRNA (cDNA clone MGC:150773 IMAGE:40125715), complete cds. ACCESSION BC117164 VERSION BC117164.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 6936) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 6936) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (26-MAY-2006) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Mike Brownstein cDNA Library Preparation: British Columbia Cancer Research Center cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRCB Plate: 6 Row: C Column: 4. FEATURES Location/Qualifiers source 1..6936 /db_xref="H-InvDB:HIT000387454" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:150773 IMAGE:40125715" /tissue_type="Cerebellum, Lung, PCR rescued clones" /clone_lib="NIH_MGC_348" /lab_host="DH10B" /note="Vector: pCR-XL-TOPO with reversed insert; Clone identification sequence tag: AAATCTTT" gene 1..6936 /gene="SETD2" /gene_synonym="FLJ22472" /gene_synonym="FLJ23184" /gene_synonym="HIF-1" /gene_synonym="HSPC069" /gene_synonym="HYPB" /gene_synonym="KIAA1732" /db_xref="GeneID:29072" /db_xref="HGNC:HGNC:18420" CDS 186..6371 /gene="SETD2" /gene_synonym="FLJ22472" /gene_synonym="FLJ23184" /gene_synonym="HIF-1" /gene_synonym="HSPC069" /gene_synonym="HYPB" /gene_synonym="KIAA1732" /codon_start=1 /product="SET domain containing 2" /protein_id="AAI17165.1" /db_xref="GeneID:29072" /db_xref="HGNC:HGNC:18420" /translation="MERRGKYSSKLERESKRTSENEAIKRCCSPPNELGFRRGSSYSK HDSSASRYKSTLSKPIPKSDKFKNSFCCTELNEEIKQSHSFSLQTPCSKGSELRMINK NPEREKAGSPAPSNRLNDSPTLKKLDELPIFKSEFITHDSHDSIKELDSLSKVKNDQL RSFCPIELNINGSPGAESDLATFCTSKTDAVLMTSDDSVTGSELSPLVKACMLSSNGF QNISRCKEKDLDDTCMLHKKSESPFRETEPLVSPHQDKLMSMPVMTVDYSKTVVKEPV DTRVSCCKTKDSDIYCTLNDSNPSLCNSEAENIEPSVMKISSNSFMNVHLESKPVICD SRNLTDHSKFACEEYKQSIGSTSSASVNHFDDLYQPIGSSGIASSLQSLPPGIKVDSL TLLKCGENTSPVLDAVLKSKKSSEFLKHAGKETIVEVGSDLPDSGKGFASRENRRNNG LSGKCLQEAQEEGNSILPERRGRPEISLDERGEGGHVHTSDDSEVVFSSCDLNLTMED SDGVTYALKCDSSGHAPEIVSTVHEDYSGSSESSNDESDSEDTDSDDSSIPRNRLQSV VVVPKNSTLPMEETSPCSSRSSQSYRHYSDHWEDERLESRRHLYEEKFESIASKACPQ TDKFFLHKGTEKNPEISFTQSSRKQIDNRLPELSHPQSDGVDSTSHTDVKSDPLGHPN SEETVKAKIPSRQQEELPIYSSDFEDVPNKSWQQTTFQNRPDSRLGKTELSFSSSCEI PHVDGLHSSEELRNLGWDFSQEKPSTTYQQPDSSYGACGGHKYQQNAEQYGGTRDYWQ GNGYWDPRSGRPPGTGVVYDRTQGQVPDSLTDDREEEENWDQQDGSHFSDQSDKFLLS LQKDKGSVQAPEISSNSIKDTLAVNEKKDFSKNLEKNDIKDRGPLKKRRQEIESDSES DGELQDRKKVRVEVEQGETSVPPGSALVGPSCVMDDFRDPQRWKECAKQGKMPCYFDL IEENVYLTERKKNKSHRDIKRMQCECTPLSKDERAQGEIACGEDCLNRLLMIECSSRC PNGDYCSNRRFQRKQHADVEVILTEKKGWGLRAAKDLPSNTFVLEYCGEVLDHKEFKA RVKEYARNKNIHYYFMALKNDEIIDATQKGNCSRFMNHSCEPNCETQKWTVNGQLRVG FFTTKLVPSGSELTFDYQFQRYGKEAQKCFCGSANCRGYLGGENRVSIRAAGGKMKKE RSRKKDSVDGELEALMENGEGLSDKNQVLSLSRLMVRIETLEQKLTCLELIQNTHSQS CLKSFLERHGLSLLWIWMAELGDGRESNQKLQEEIIKTLEHLPIPTKNMLEESKVLPI IQRWSQTKTAVPPLSEGDGYSSENTSRAHTPLNTPDPSTKLSTEADTDTPKKLMFRRL KIISENSMDSAISDATSELEGKDGKEDLDQLENVPVEEEEELQSQQLLPQQLPECKVD SETNIEASKLPTSEPEADAEIELKESNGTKLEEPINEETPSQDEEEGVSDVESERSQE QPDKTVDISDLATKLLDSWKDLKEVYRIPKKSQTEKENTTTERGRDAVGFRDQTPAPK TPNRSRERDPDKQTQNKEKRKRRSSLSPPSSAYERGTKRPDDRYDTPTSKKKVRIKDR NKLSTEERRKLFEQEVAQREAQKQQQQMQNLGMTSPLPYDSLGYNAPHHPFAGYPPGY PMQAYVDPSNPNAGKVLLPTPSMDPVCSPAPYDHAQPLVGHSTEPLSAPPPVPVVPHV AAPVEVSSSQYVAQSDGVVHQDSSVAVLPVPAPGPVQGQNYSVWDSNQQSVSVQQQYS PAQSQATIYYQGQTCPTVYGVTSPYSQTTPPIVQSYAQPSLQYIQGQQIFTAHPQGVV VQPAAAVTTIVAPGQPQPLQPSEMVVTNNLLDLPPPSPPKPKTIVLPPNWKTARDPEG KIYYYHVITRQTQWDPPTWESPGDDASLEHEAEMDLGTPTYDENPMKASKKPKTAEAD TSSELAKKSKEVFRKEMSQFIVQCLNPYRKPDCKVGRITTTEDFKHLARKLTHGVMNK ELKYCKNPEDLECNENVKHKTKEYIKKYMQKFGAVYKPKEDTELE" BASE COUNT 2249 a 1412 c 1575 g 1700 t ORIGIN 1 agaggacgcg ctattctcgg ccatacacag ataacagagc acgagagagt tctgactcag 61 aagaagagta taagaagaca tactcaaggc gtacctcatc tcattcctct tcttacagag 121 acctaaggac atcatcctat tctaaatctg atcgggactg taaaactgag acctcttact 181 tagagatgga aagaagaggc aagtattctt caaaactaga aagagaatct aaaaggactt 241 cagaaaatga agcaattaaa agatgttgtt ctccccctaa tgaactggga ttccgacgag 301 ggtcatcata ttctaagcat gacagtagtg cttcccgtta taaatctacc ctttcaaaac 361 ctatacccaa gtctgataaa tttaaaaatt ctttctgttg tacagaatta aatgaagaaa 421 tcaaacagtc tcattctttt agtttacaga caccttgttc aaaaggtagt gaattaagaa 481 tgattaataa aaatcctgaa agagaaaagg ctgggtctcc agctccatca aatcgattaa 541 atgattcacc tactttaaaa aagctagatg aattgcctat ttttaagtcc gaatttataa 601 cacatgatag ccatgatagt attaaggaat tagactcttt atctaaagtg aagaatgatc 661 aattaagaag tttttgtccc atagaattaa atataaatgg atctcctggg gcagaatctg 721 atttggcaac attttgcact tctaaaactg atgctgtttt aatgacttct gatgatagtg 781 tgactggatc ggaattatcc cctttggtca aagcatgcat gctttcatca aatggatttc 841 agaatattag taggtgcaaa gaaaaagact tggatgatac ctgcatgctg cataagaagt 901 cagaaagccc atttagagaa acagaacctc tggtgtcacc acaccaagat aaactcatgt 961 ctatgccagt tatgactgtg gattattcca aaacagtagt taaagaacca gttgatacga 1021 gggtttcttg ctgcaaaacc aaagattcag acatatactg tactttgaac gatagcaacc 1081 cttctttgtg taactctgaa gctgaaaata ttgagccttc agttatgaag atttcttcaa 1141 atagctttat gaatgtgcat ttggaatcaa aaccagttat atgtgatagt agaaatttga 1201 cagatcactc aaaatttgca tgtgaagaat ataagcagag catcggtagc actagttcag 1261 cttctgttaa tcattttgat gatttatatc aacctattgg gagttcaggt attgcttcat 1321 ctcttcagag tcttccacca ggaataaagg tggacagtct aactctcttg aaatgcggag 1381 agaacacatc tccagttctg gatgcagtgc taaagagtaa aaaaagttca gagtttttaa 1441 agcatgcagg gaaagaaaca atagtagaag taggtagtga ccttcctgat tcaggaaagg 1501 gatttgcttc cagggagaac aggcgtaata atgggttatc tgggaaatgt ttgcaagagg 1561 ctcaagaaga agggaattcc atattgcctg aaagaagagg aagaccagaa atctctttag 1621 atgaaagagg agaaggagga catgtgcata cttctgatga ctcagaagtt gtattttctt 1681 cttgtgattt gaatttaacc atggaagaca gtgatggtgt aacttatgca ttaaagtgtg 1741 acagtagtgg tcatgcccca gaaattgtgt ctacagttca tgaagattat tctggctctt 1801 ctgaaagttc aaatgatgaa agtgattcag aagatacaga ttcggatgat agcagtattc 1861 caagaaaccg tctccagtct gttgtggttg tgccaaagaa ttctactttg cccatggaag 1921 aaacaagtcc ttgttcttct cggagcagtc aaagttatag acactattct gaccattggg 1981 aagatgagag attggagtca aggagacatt tgtatgagga aaaatttgaa agtatagcaa 2041 gtaaagcctg tcctcaaact gataagtttt tccttcataa aggaacagag aagaatccgg 2101 aaatttcttt tacacagtcc agtagaaaac aaatagataa ccgcctgcct gaactttctc 2161 atcctcagag tgatggggtt gatagtacaa gtcatacaga tgtgaaatct gaccctctgg 2221 gtcacccaaa ttcagaggaa accgtgaaag ccaaaatacc ttctaggcag caagaagagc 2281 tgccaattta ttcttctgat tttgaagatg tcccaaataa gtcttggcaa cagaccactt 2341 tccaaaacag gccagatagt agactgggaa aaacagaatt gagtttttct tcctcttgtg 2401 agataccaca tgtggatggc ttgcactcat cagaagagct cagaaactta ggttgggact 2461 tctctcaaga aaagccttct accacgtatc agcaacctga cagtagctat ggagcttgtg 2521 gtggacacaa gtatcagcaa aatgcagaac agtatggtgg gacacgtgat tactggcaag 2581 gcaatggtta ctgggatcca agatcaggta gacctcctgg aactggggtt gtgtatgatc 2641 gaactcaagg acaagtacca gattccctaa cagatgatcg tgaagaagag gagaattggg 2701 atcaacagga tggatcccat ttttcagacc agtccgataa atttcttcta tcccttcaga 2761 aagacaaggg gtcagtgcaa gcacctgaaa taagcagcaa ttccattaag gacactttag 2821 ctgtgaatga aaagaaagat ttttcaaaaa acttagaaaa aaatgatatc aaagatagag 2881 ggcctcttaa aaaaaggagg caggaaatag agagtgattc tgaaagtgat ggtgagcttc 2941 aggacagaaa gaaagttaga gtggaggtag agcagggaga gacatcagtg cccccaggtt 3001 cagcactggt tgggccctcc tgtgtcatgg atgacttcag ggacccacag cgatggaagg 3061 aatgtgccaa gcaagggaaa atgccatgtt actttgatct tattgaagaa aatgtttatt 3121 taacagaaag aaagaagaat aaatctcatc gagatattaa gcgaatgcag tgtgagtgta 3181 cacctctttc taaagatgaa agagctcaag gtgaaatagc atgtggggaa gattgtctta 3241 atcgtcttct catgattgaa tgttcttctc ggtgtccaaa tggggattat tgttccaata 3301 gacggtttca gagaaaacag catgcagatg tggaagtcat actcacagaa aagaaaggct 3361 ggggcttgag agctgccaaa gaccttcctt cgaacacctt tgtcctagaa tattgtggag 3421 aggtactcga tcataaagag tttaaagctc gagtgaagga gtatgcacga aacaaaaaca 3481 tccattacta tttcatggcc ctgaagaatg atgagataat agatgccact caaaaaggaa 3541 attgctctcg tttcatgaat cacagctgtg aaccaaattg tgaaacccaa aaatggactg 3601 tgaacggaca actgagggtt gggtttttta ccaccaaact ggttccttca ggctcagagt 3661 taacgtttga ctatcagttc cagagatatg gaaaagaagc ccagaaatgt ttctgcggat 3721 cagccaattg ccggggttac ctgggaggag aaaacagagt cagcatcaga gcagcaggag 3781 ggaaaatgaa gaaggaacga tctcgtaaga aggattcagt ggatggagag ctagaagctc 3841 tgatggaaaa tggtgagggt ctctctgata aaaaccaggt gctcagctta tcccggctaa 3901 tggttagaat tgaaactttg gagcagaaac ttacctgtct ggaactcata cagaacacac 3961 actcacagtc ctgcctgaag tcctttctgg aacgtcatgg gctgtctttg ttgtggatct 4021 ggatggcaga gctaggtgac ggccgggaaa gtaaccagaa gcttcaggaa gagattataa 4081 agactttgga acacttgccc attcctacta aaaatatgtt ggaggaaagc aaagtacttc 4141 caattattca acgctggtct cagactaaga ctgctgtccc tccgttgagt gaaggagatg 4201 ggtattctag tgagaataca tcgcgtgctc atacaccact caacacacct gatccttcca 4261 ccaagctgag cacagaagct gacacagaca ctcccaagaa actaatgttt cgcagactga 4321 aaattataag tgaaaatagc atggacagtg caatctctga tgcaaccagt gagctagaag 4381 gcaaggatgg caaagaggat cttgatcaat tagaaaatgt ccctgtagag gaagaggaag 4441 aattgcagtc acaacagcta ctcccacaac agctgcctga atgcaaagtt gatagtgaaa 4501 ccaacataga agctagtaag ctacctacat ctgaaccaga agctgacgct gaaatagagc 4561 tcaaagagag caacggcaca aaactagaag aacctattaa tgaagaaaca ccatcccaag 4621 atgaagagga gggtgtgtct gatgtggaga gtgaaaggag ccaagaacag ccagataaaa 4681 cagtggatat aagtgatttg gccaccaaac tcctggacag ttggaaagac ctaaaggagg 4741 tatatcgaat tccaaagaaa agtcaaactg aaaaggaaaa cacaacaact gaacgaggaa 4801 gggatgctgt tggcttcaga gatcaaacac ctgccccgaa gactcctaat aggtcaagag 4861 agagagaccc agacaagcaa actcaaaata aagagaaaag gaaacgaaga agctccctct 4921 caccaccctc ttctgcctat gagcggggaa caaaaaggcc agatgacaga tatgatacac 4981 caacttctaa aaagaaagta cgaattaaag accgcaataa actttctaca gaggaacgcc 5041 ggaagttgtt tgagcaagag gtggctcaac gggaggctca gaaacaacag caacagatgc 5101 agaacctggg aatgacatca ccactgccct atgactctct tggttataat gccccgcatc 5161 atccctttgc tggttaccca ccaggttatc ccatgcaggc ctatgtggat cccagcaacc 5221 ctaatgctgg aaaggtgctc ctgcccacac ccagcatgga cccagtgtgt tctcctgctc 5281 cttatgatca tgctcagccc ttggtgggac attctacaga acccctttct gcccctccac 5341 cagtaccagt ggtgccacat gtggcagctc ctgtggaagt ttccagttcc cagtatgtgg 5401 cccagagtga tggtgtagta caccaagact ccagcgttgc tgtcttgcca gtgccggccc 5461 ccggcccagt tcagggacag aattatagtg tttgggattc aaaccaacag tctgtcagtg 5521 tacagcagca gtactctcct gcacagtctc aagcaaccat atattatcaa ggacagacat 5581 gtccaacagt ctatggtgtg acatcacctt attcacagac aactccacca attgtacaga 5641 gttatgccca gccaagtctt cagtatatcc aggggcaaca gattttcaca gctcatccac 5701 aaggagtggt ggtacagcca gccgcagcag tgactacaat agttgcacca gggcagcctc 5761 agcccttgca gccatctgaa atggttgtga caaataatct cttggatctg ccgcccccct 5821 ctcctcccaa accaaaaacc attgtcttac ctcccaactg gaagacagct cgagatccag 5881 aagggaagat ttattactac catgtgatca caaggcagac tcagtgggat cctcctactt 5941 gggaaagccc aggagatgat gccagccttg agcatgaagc tgagatggac ctgggaactc 6001 caacatatga tgaaaacccc atgaaggcct cgaaaaagcc caagacagca gaagcagaca 6061 cctccagtga actagcaaag aaaagcaaag aagtattcag aaaagagatg tcccagttca 6121 tcgtccagtg cctgaaccct taccggaaac ctgactgcaa agtgggaaga attaccacaa 6181 ctgaagactt taaacatctg gctcgcaagc tgactcacgg tgttatgaat aaggagctga 6241 agtactgtaa gaatcctgag gacctggagt gcaatgagaa tgtgaaacac aaaaccaagg 6301 agtacattaa gaagtacatg cagaagtttg gggctgttta caaacccaaa gaggacactg 6361 aattagagtg actgttgggc cagggtggga ggatgggcgg tcaggtaaga cagactctag 6421 ggagaggaaa tcctgtgggc ctttctgtcc cacccctgtc agcactgtgc tactgatgat 6481 acatcaccct ggggaattca accctgcaga tgtcaactga aggccacaaa aatgaactcc 6541 atctacaagt gattacctag ttgtgagctg ttggcatgtg gttagaagcc atcagaggtg 6601 caagggctta gaaaagaccc tggccagacc tgactccact cttaaacctg ggtcttctcc 6661 ttggcggtgc tgtcagcgca cagacccatg cgcatcccca cccacaaccc tttaccctga 6721 tgatctgtat tatattttaa tgtatatgtg aatatattga aaataatttg ttttttcctg 6781 gtttttgttt ggttttcgtt ttgcttttag cctctacatg ctaggatcac aggaagactt 6841 tgtaaggaca gtttaagttc tcctgcaagg tttaatttgt tatcatgtaa atattccaaa 6901 gcaggctgcc ttgtggtttt ggccagcctt gtgcta //