LOCUS BC117161 4474 bp mRNA linear HUM 26-JUN-2006
DEFINITION Homo sapiens neogenin homolog 1 (chicken), mRNA (cDNA clone
MGC:150770 IMAGE:40125712), complete cds.
ACCESSION BC117161
VERSION BC117161.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4474)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4474)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (26-MAY-2006) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein, NIMH
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 6 Row: C Column: 1.
FEATURES Location/Qualifiers
source 1..4474
/db_xref="H-InvDB:HIT000387451"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:150770 IMAGE:40125712"
/tissue_type="Brain, cerebral cortex, PCR rescued clones"
/clone_lib="NIH_MGC_286"
/note="Vector: pCR4-TOPO; Clone identification sequence
tag: GATAGTGA"
gene 1..4474
/gene="NEO1"
/gene_synonym="HsT17534"
/gene_synonym="NGN"
/db_xref="GeneID:4756"
/db_xref="HGNC:HGNC:7754"
/db_xref="MIM:601907"
CDS 67..4452
/gene="NEO1"
/gene_synonym="HsT17534"
/gene_synonym="NGN"
/codon_start=1
/product="neogenin homolog 1 (chicken)"
/protein_id="AAI17162.1"
/db_xref="GeneID:4756"
/db_xref="HGNC:HGNC:7754"
/db_xref="MIM:601907"
/translation="MAAERGARRLLSTPSFWLYCLLLLGRRAPGAAAARSGSAPQSPG
ASIRTFTPFYFLVEPVDTLSVRGSSVILNCSAYSEPSPKIEWKKDGTFLNLVSDDRRQ
LLPDGSLFISNVVHSKHNKPDEGYYQCVATVESLGTIISRTAKLIVAGLPRFTSQPEP
SSVYAGNNAILNCEVNADLVPFVRWEQNRQPLLLDDRVIKLPSGMLVISNATEGDGGL
YRCVVESGGPPKYSDEVELKVLPDPEVISDLVFLKQPSPLVRVIGQDVVLPCVASGLP
TPTIKWMKNEEALDTESSERLVLLAGGSLEISDVTEDDAGTYFCIADNGNETIEAQAE
LTVQAQPEFLKQPTNIYAHESMDIVFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKE
HNLQVLGLVKSDEGFYQCIAENDVGNAQAGAQLIILEHAPATTGPLPSAPRDVVASLV
STRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHPGEMQVTIQNLMPATV
YIFRVMAQNKHGSGESSAPLRVETQPEVQLPGPAPNLRAYAASPTSITVTWETPVSGN
GEIQNYKLYYMEKGTDKEQDVDVSSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDV
AVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDV
TETLVSGTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDWLSAETFESDLDETRVPE
VPSSLHVRPLVTSIVVSWTPPENQNIVVRGYAIGYGIGSPHAQTIKVDYKQRYYTIEN
LDPSSHYVITLKAFNNVGEGIPLYESAVTRPHTDTSEVDLFVINAPYTPVPDPTPMMP
PVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTLS
YLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVSKEGKPKT
IIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTLDTPYYF
KIQARNSKGMGPMSEAVQFRTPKADSSDKMPNDQASGSGGKGSRLPDLGSDYKPPMSG
SNSPHGSPTSPLDSNMLLVIIVSVGVITIVVVVIIAVFCTRRTTSHQKKKRAACKSVN
GSHKYKGNSKDVKPPDLWIHHERLELKPIDKSPDPNPIMTDTPIPRNSQDITPVDNSM
DSNIHQRRNSYRGHESEDSMSTLAGRRGMRPKMMMPFDSQPPQPVISAHPIHSLDNPH
HHFHSSSLASPARSHLYHPGSPWPIGTSMSLSDRANSTESVRNTPSTDTMPASSSQTC
CTDHQDPEGATSSSYLASSQEEDSGQSLPTAHVRPSHPLKSFAVPAIPPPGPPTYDPA
LPSTPLLSQQALNHHIHSVKTASIGTLGRSRPPMPVVVPSAPEVQETTRMLEDSESSY
EPDELTKEMAHLEGLMKDLNAITTA"
BASE COUNT 1233 a 1138 c 1038 g 1065 t
ORIGIN
1 gggagggaag gaggcaaggg ctccgcggcg ctgtcgccgc cgctgccgct cactctcggg
61 gaagagatgg cggcggagcg gggagcccgg cgactcctca gcaccccctc cttctggctc
121 tactgcctgc tgctgctcgg gcgccgggcg ccgggcgccg cggccgccag gagcggctcc
181 gcgccgcagt ccccaggagc cagcattcga acgttcactc cattttattt tctggtggag
241 ccggtggata cactctcagt tagaggctct tctgttatat taaactgttc agcatattct
301 gagccttctc caaaaattga atggaaaaaa gatggaactt ttttaaactt agtatcagat
361 gatcgacgcc agcttctccc ggatggatct ttatttatca gcaatgtggt gcattccaaa
421 cacaataaac ctgatgaagg ttattatcag tgtgtggcca ctgttgagag tcttggaact
481 attatcagta gaacagcgaa gctcatagta gcaggtcttc caagatttac cagccaacca
541 gaaccttcct cagtttatgc tgggaacaat gcaattctga attgtgaagt taatgcagat
601 ttggtcccat ttgtgaggtg ggaacagaac agacaacccc ttcttctgga tgatagagtt
661 atcaaacttc caagtggaat gctggttatc agcaatgcaa ctgaaggaga tggcgggctt
721 tatcgctgcg tagtggaaag tggtgggcca ccaaagtata gtgatgaagt tgaattgaag
781 gttcttccag atcctgaggt gatatcagac ttggtatttt tgaaacagcc ttctccctta
841 gtcagagtca ttggtcagga tgtagtgttg ccatgtgttg cttcaggact tcctactcca
901 accattaaat ggatgaaaaa tgaggaggca cttgacacag aaagctctga aagattggta
961 ttgctggcag gtggtagcct ggagatcagt gatgttactg aggatgatgc tgggacttat
1021 ttttgtatag ctgataatgg aaatgagaca attgaagctc aagcagagct tacagtgcaa
1081 gctcaacctg aattcctgaa gcagcctact aatatatatg ctcacgaatc tatggatatt
1141 gtatttgaat gtgaagtgac tggaaaacca actccaactg tgaagtgggt caaaaatggg
1201 gatatggtta tcccaagtga ttattttaag attgtaaagg aacataatct tcaagttttg
1261 ggtctggtga aatcagatga agggttctat cagtgcattg ctgaaaatga tgttggaaat
1321 gcacaagctg gagcccaact gataatcctt gaacatgcac cagccacaac gggaccactg
1381 ccttcagctc ctcgggatgt cgtggcctcc ctggtctcta cccgcttcat caaattgacg
1441 tggcggacac ctgcatcaga tcctcacgga gacaacctta cctactctgt gttctacacc
1501 aaggaaggga ttgctaggga acgtgttgag aataccagtc acccaggaga gatgcaagta
1561 accattcaaa acctaatgcc agcgaccgtg tacatcttta gagttatggc tcaaaataag
1621 catggctcag gagagagttc agctccactg cgagtagaaa cacaacctga ggttcagctc
1681 cctggcccag cacctaacct tcgtgcatat gcagcttcgc ctacctccat cactgttacg
1741 tgggaaacac cagtgtctgg caatggggaa attcagaatt ataaattgta ctacatggaa
1801 aaggggactg ataaagaaca ggatgttgat gtttcaagtc actcttacac cattaatggg
1861 ttgaaaaaat atacagagta tagtttccga gtggtggcct acaataaaca tggtcctgga
1921 gtttccacac cagatgttgc tgttcgaaca ttgtcagatg ttcccagtgc tgctcctcag
1981 aatctgtcct tggaagtgag aaattcaaag agtattatga ttcactggca gccacctgct
2041 ccagccacac aaaatgggca gattactggc tacaagattc gctaccgaaa ggcctcccga
2101 aagagtgatg tcactgagac cttggtaagc gggacacagc tgtctcagct gattgaaggt
2161 cttgatcggg ggactgagta taatttccga gtggctgctc taacaatcaa tggtacaggc
2221 ccggcaactg actggctgtc tgctgaaact tttgaaagtg acctagatga aactcgtgtt
2281 cctgaagtgc ctagctctct tcacgtacgc ccgctcgtta ctagcatcgt agtgagctgg
2341 actcctccag agaatcagaa cattgtggtc agaggttacg ccattggtta tggcattggc
2401 agccctcatg cccagaccat caaagtggac tataaacagc gctattacac cattgaaaat
2461 ctggatccca gctctcacta tgtgattacc ctgaaagcat ttaataacgt gggtgaaggc
2521 atccccctgt atgagagtgc tgtgaccagg cctcacacag acacttctga agttgattta
2581 tttgttatta atgctccata cactccagtg ccagatccca ctcccatgat gccaccagtg
2641 ggagttcagg cttccattct gagtcatgac accatcagga ttacgtgggc agacaactcg
2701 ctgcccaagc accagaagat tacagactcc cgatactaca ccgtccgatg gaaaaccaac
2761 atcccagcaa acaccaagta caagaatgca aatgcaacca ctttgagtta tttggtgact
2821 ggtttaaagc cgaatacact ctatgaattc tctgtgatgg tgaccaaagg tcgaagatca
2881 agtacatgga gtatgacagc ccatgggacc acctttgaat tagttccgac ttctccaccc
2941 aaggatgtga ctgttgtgag taaagagggg aaacctaaga ccataattgt gaattggcag
3001 cctccctccg aagccaatgg caaaattaca ggttacatca tatattacag tacagatgtg
3061 aatgcagaga tacatgactg ggttattgag cctgttgtgg gaaacagact gactcaccag
3121 atacaagagt taactcttga cacaccatac tacttcaaaa tccaggcacg gaactcaaag
3181 ggcatgggac ccatgtctga agctgtccaa ttcagaacac ctaaagcgga ctcctctgat
3241 aaaatgccta atgatcaagc ctcagggtct ggagggaaag gaagccggct gccagaccta
3301 ggatccgact acaaacctcc aatgagcggc agtaacagcc ctcatgggag ccccacctct
3361 cctctggaca gtaatatgct gctggtcata attgtttctg ttggcgtcat caccatcgtg
3421 gtggttgtga ttatcgctgt cttttgtacc cgtcgtacca cctctcacca gaaaaagaaa
3481 cgagctgcct gcaaatcagt gaatggctct cataagtaca aagggaattc caaagatgtg
3541 aaacctccag atctctggat ccatcatgag agactggagc tgaaacccat tgataagtct
3601 ccagacccaa accccatcat gactgatact ccaattcctc gcaactctca agatatcaca
3661 ccagttgaca actccatgga cagcaatatc catcaaaggc gaaattcata cagagggcat
3721 gagtcagagg acagcatgtc tacactggct ggaaggcgag gaatgagacc aaaaatgatg
3781 atgccctttg actcccagcc accccagcct gtgattagtg cccatcccat ccattccctc
3841 gataaccctc accatcattt ccactccagc agcctcgctt ctccagctcg cagtcatctc
3901 taccacccgg gcagcccatg gcccattggc acatccatgt ccctttcaga cagggccaat
3961 tccacagaat ccgttcgaaa tacccccagc actgacacca tgccagcctc ttcgtctcaa
4021 acatgctgca ctgatcacca ggaccctgaa ggtgctacca gctcctctta cttggccagc
4081 tcccaagagg aagattcagg ccagagtctt cccactgccc atgttcgccc ttcccaccca
4141 ttgaagagct tcgccgtgcc agcaatcccg cctccaggac ctcccaccta tgatcctgca
4201 ttgccaagca caccattact gtcccagcaa gctctgaacc atcacattca ctcagtgaag
4261 acagcctcca tcgggactct aggaaggagc cggcctccta tgccagtggt tgttcccagt
4321 gcccctgaag tgcaggagac cacaaggatg ttggaagact ccgagagtag ctatgaacca
4381 gatgagctga ccaaagagat ggcccacctg gaaggactaa tgaaggacct aaacgctatc
4441 acaacagcat gacgaccttc accaggacct gact
//