LOCUS BC117134 5770 bp mRNA linear HUM 26-JUN-2006
DEFINITION Homo sapiens chromodomain helicase DNA binding protein 1, mRNA
(cDNA clone MGC:150743 IMAGE:40125685), complete cds.
ACCESSION BC117134
VERSION BC117134.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5770)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 5770)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (26-MAY-2006) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 6 Row: A Column: 22.
FEATURES Location/Qualifiers
source 1..5770
/db_xref="H-InvDB:HIT000387424"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:150743 IMAGE:40125685"
/tissue_type="Cerebellum, Lung, PCR rescued clones"
/clone_lib="NIH_MGC_348"
/lab_host="DH10B"
/note="Vector: pCR-XL-TOPO with reversed insert; Clone
identification sequence tag: CAGATTAG"
gene 1..5770
/gene="CHD1"
/db_xref="GeneID:1105"
/db_xref="HGNC:HGNC:1915"
/db_xref="MIM:602118"
CDS 139..5268
/gene="CHD1"
/codon_start=1
/product="chromodomain helicase DNA binding protein 1"
/protein_id="AAI17135.1"
/db_xref="GeneID:1105"
/db_xref="HGNC:HGNC:1915"
/db_xref="MIM:602118"
/translation="MNGHSDEESVRNSSGESSQSDDDSGSASGSGSGSSSGSSSDGSS
SQSGSSDSDSGSESGSQSESESDTSRENKVQAKPPKVDGAEFWKSSPSILAVQRSAIL
KKQQQQQQQQQHQASSNSGSEEDSSSSEDSDDSSSEVKRKKHKDEDWQMSGSGSPSQS
GSDSESEEEREKSSCDETESDYEPKNKVKSRKPQNRSKSKNGKKILGQKKRQIDSSEE
DDDEEDYDNDKRSSRRQATVNVSYKEDEEMKTDSDDLLEVCGEDVPQPEEEEFETIER
FMDCRIGRKGATGATTTIYAVEADGDPNAGFEKNKEPGEIQYLIKWKGWSHIHNTWET
EETLKQQNVRGMKKLDNYKKKDQETKRWLKNASPEDVEYYNCQQELTDDLHKQYQIVE
RIIAHSNQKSAAGYPDYYCKWQGLPYSECSWEDGALISKKFQACIDEYFSRNQSKTTP
FKDCKVLKQRPRFVALKKQPSYIGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEM
GLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDIN
SRNMIRTHEWTHHQTKRLKFNILLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKNDDS
LLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEEHGKGREYG
YASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKG
SKGSTSGFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQHLIRSSGKLILLDKLLI
RLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSE
DFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVT
KGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSTPFNKEELSAILKFG
AEELFKEPEGEEQEPQEMDIDEILKRAETHENEPGPLTVGDELLSQFKVANFSNMDED
DIELEPERNSKNWEEIIPEDQRRRLEEEERQKELEEIYMLPRMRNCAKQISFNGSEGR
RSRSRRYSGSDSDSISEGKRPKKRGRPRTIPRENIKGFSDAEIRRFIKSYKKFGGPLE
RLDAIARDAELVDKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVKGPTFRI
SGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLL
IGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKLLSRDLAKK
EALSGAGSSKRRKARAKKNKAMKSIKVKEEIKSDSSPLPSEKSDEDDDKLSESKSDGR
ERSKKSSVSDAPVHITASGEPVPISEESEELDQKTFSICKERMRPVKAALKQLDRPEK
GLSEREQLEHTRQCLIKIGDHITECLKEYTNPEQIKQWRKNLWIFVSKFTEFDARKLH
KLYKHAIKKRQESQQNSDQNSNLNPHVIRNPDVERLKENTNHDDSSRDSYSSDRHLTQ
YHDHHKDRHQGDSYKKSDSRKRPYSSFSNGKDHRDWDHYKQDSRYYSDREKHRKLDDH
RSRDHRSNLEGSLKDRSHSDHRSHSDHRLHSDHRSSSEYTHHKSSRDYRYHSDWQMDH
RASSSGPRSPLDQRSYGSRSPFEHSVEHKSTPEHTWSSRKT"
BASE COUNT 2055 a 981 c 1221 g 1513 t
ORIGIN
1 ggagagtccc agaaaacctg tgactgttga agaaaattca tctgtgaatt tttatattca
61 aggagtcagt atttatattc atcttttaaa ctgggaagat ttatatttta ctttaaaact
121 tcttgataat aatttacaat gaatggacac agtgatgaag aaagtgttag aaacagtagt
181 ggagaatcaa gccagtcgga tgatgattct gggtcagctt caggctctgg atctggttcg
241 agttctggaa gcagtagtga tggaagcagt agccagtcag gtagcagtga ctctgactcc
301 ggatctgaat caggcagtca gtcagagtct gagtcagaca cttcccgaga aaacaaagtt
361 caagcaaaac caccgaaagt tgatggagct gagttttgga aatctagtcc tagtattctg
421 gccgttcaga gatctgcaat cctcaagaag cagcaacagc agcagcagca acaacaacat
481 caagcctcat ctaatagcgg atcagaagag gattcctcta gcagtgaaga ttccgatgac
541 tcatcaagtg aggtcaaaag gaaaaagcat aaagatgaag attggcaaat gtctgggtca
601 ggatctccat ctcagtctgg ttcagattca gaatctgaag aagagagaga gaaaagcagt
661 tgtgatgaaa cagaatctga ttatgagcca aaaaacaaag tcaaaagcag aaaacctcaa
721 aatagatcta agtcaaaaaa tggaaagaag attcttggac aaaaaaagag acagattgat
781 tcatctgagg aggatgatga tgaagaagat tatgataatg ataaaagaag ttctcgtcgc
841 caagcaactg ttaatgttag ctataaggag gatgaagaaa tgaaaacaga ttctgatgac
901 ctactggaag tctgtggaga ggatgttcct caacctgagg aagaggaatt tgaaaccata
961 gaaagattta tggattgtcg gattgggaga aaaggagcta ctggtgctac tacaaccatc
1021 tatgcagttg aagcagatgg tgacccaaat gcaggctttg aaaaaaacaa agaaccagga
1081 gagattcagt atttaattaa atggaaagga tggtcccata tccacaacac ttgggagaca
1141 gaagaaaccc tcaagcagca gaatgttaga ggaatgaaaa aattggataa ttataagaaa
1201 aaagatcagg aaacaaaaag atggttgaaa aatgcctctc cagaagatgt ggaatattat
1261 aattgccagc aagaacttac agatgatcta cataaacagt atcaaatagt ggaacgtata
1321 attgctcatt ccaatcaaaa gtcagcagct ggttatcctg attattactg caaatggcag
1381 ggccttccat actcagagtg cagctgggaa gatggagctc tcatttccaa aaagtttcaa
1441 gcatgcattg atgagtattt tagcaggaac caatcaaaaa ccactccttt taaagattgc
1501 aaagtattaa aacaaaggcc aaggtttgta gccctgaaga agcagccatc ctatattgga
1561 ggacatgagg gcttagaatt aagagattat caactgaatg gtttaaattg gcttgctcat
1621 tcttggtgca aaggaaatag ttgcatactc gctgatgaaa tgggccttgg aaaaacaata
1681 cagacgatct catttctgaa ttatttgttt catgaacatc aattatatgg acctttttta
1741 ttggtagtac cgctctccac tcttacttcc tggcaaaggg aaattcagac ttgggcttct
1801 caaatgaatg ctgtggttta tttaggtgac attaacagca gaaacatgat aagaactcat
1861 gaatggacgc atcatcagac caaacggtta aaatttaata tattgttaac aacttatgaa
1921 attttattaa aagataaggc attccttgga ggtctaaatt gggcatttat aggtgttgat
1981 gaagcacacc gattaaagaa tgatgactcc cttctgtata aaactttaat agattttaaa
2041 tccaatcatc gtctccttat cactggaact cctctacaga attccctcaa agagctctgg
2101 tctttgctac atttcattat gccagaaaag ttttcttcct gggaagattt tgaagaagaa
2161 catggcaaag ggagagaata tggttatgca agccttcaca aggagcttga gccatttctg
2221 ttacgccgag ttaagaaaga tgtggaaaaa tctcttcctg ccaaggttga gcagatttta
2281 agaatggaaa tgagtgcttt acagaaacaa tattacaaat ggattttaac taggaattac
2341 aaagccctca gcaaaggttc caagggcagt acctcaggct ttttgaacat tatgatggag
2401 ctaaagaaat gttgtaacca ttgctacctc attaaaccac cagataataa tgaattctat
2461 aataaacagg aggccttaca acacttaatt cgtagtagcg gaaaattgat tcttcttgac
2521 aagctattaa ttcgcctaag agaacgaggc aatcgagttc ttattttttc acaaatggtg
2581 cggatgttag atatacttgc agaatatttg aaatatcgtc aattcccctt tcaaagatta
2641 gatggatcaa taaaaggaga actgaggaaa caagctctag atcattttaa tgctgaggga
2701 tcagaggatt tttgcttttt gctgtccaca agagctggag gtctagggat taatttagcc
2761 tctgctgaca ctgttgttat atttgattcc gattggaatc cacagaatga tcttcaggca
2821 caggctagag cccatcgaat tgggcaaaag aaacaggtga atatttatcg tctagttaca
2881 aagggatcag ttgaagaaga tattcttgaa agggcgaaaa agaagatggt tttagatcat
2941 cttgtaattc aaagaatgga cacaactggg aagacagtac tacatacagg ttctgcccca
3001 tcaagttcta ctcctttcaa taaagaagag ttatcagcca ttttaaagtt tggtgctgaa
3061 gaacttttta aggaacctga aggagaagaa caagagcccc aggaaatgga tatagatgaa
3121 atcttgaaga gagctgaaac tcatgaaaat gaaccaggtc ctttaactgt aggagatgaa
3181 ttgctttccc agttcaaggt tgccaacttc tcaaatatgg atgaggatga cattgagttg
3241 gaacctgaaa gaaattcaaa gaattgggag gaaattattc cagaagatca aagaagacga
3301 ttagaagaag aagaaagaca aaaggaactt gaagaaattt atatgctccc aagaatgaga
3361 aattgtgcaa aacagattag tttcaatgga agtgaaggga ggcgcagtag aagtaggaga
3421 tactctggat ctgatagtga ttccatctca gaagggaaaa ggccaaagaa acgtggaaga
3481 ccacggacta ttcctcggga gaatattaaa ggatttagtg atgcagaaat taggcggttt
3541 atcaagagct ataagaaatt tggtggtcct ctggaaagat tagatgcaat tgctcgagat
3601 gctgagttag ttgataagtc agaaacagac cttagacgac tgggagaatt ggtacataat
3661 ggttgcatta aagcattaaa ggatagttct tcaggaacag aacgaacagg tggtagactc
3721 ggaaaagtga agggtccaac attccgaata tcaggagtac aggtgaatgc caaactagtc
3781 atctcccatg aagaagaatt aatacctttg cacaaatcca ttccttctga tccagaagaa
3841 agaaagcagt atactatccc atgccacaca aaggcagctc attttgatat agactggggc
3901 aaagaagatg attccaattt gttaattggc atctatgaat atggatatgg aagctgggaa
3961 atgattaaaa tggatcctga cctcagtcta acacacaaga ttcttccaga tgatcccgat
4021 aaaaaaccac aagcaaaaca gttgcagacc cgtgcagact acctcatcaa attacttagt
4081 agagatcttg caaaaaaaga agctctttct ggtgcgggaa gttcaaagag gagaaaagca
4141 agagctaaga agaataaagc aatgaagtct ataaaagtga aagaggaaat aaagagtgat
4201 tcttctcctc tgccttcaga gaagtctgat gaagatgatg ataaattgag tgaatccaag
4261 tctgatggta gggaaagatc caagaaatct tcagtgtcag atgctccagt tcatatcacg
4321 gcaagtggtg aaccagttcc catttctgaa gaatctgaag agctggatca gaagacattc
4381 agcatttgta aagaaagaat gaggcctgtt aaagcagctt tgaaacaact tgataggcct
4441 gagaaaggcc tttcagaaag agaacaacta gaacatacta gacaatgttt aataaaaatt
4501 ggagaccata tcacagaatg tctaaaagag tatacaaatc ctgaacaaat taagcaatgg
4561 agaaaaaacc tgtggatttt tgtatctaag tttactgaat ttgatgcaag aaaattacat
4621 aaattatata agcatgctat taaaaaacgg caggagtctc agcaaaacag tgatcaaaac
4681 agcaacttga atcctcacgt gattagaaat ccagatgtgg aaagattaaa agagaataca
4741 aatcacgatg atagcagcag ggacagttat tcctctgata gacacttaac tcagtaccat
4801 gatcatcata aagaccgaca tcagggagat tcttacaaaa aaagtgattc caggaaaaga
4861 ccctattctt cttttagtaa tggtaaagac catcgtgatt gggatcacta caagcaagac
4921 agcagatatt acagtgacag agagaaacac agaaaactgg atgatcacag gagtagagat
4981 cacaggtcaa atttggaagg aagtttaaaa gatagatctc attctgatca tcgttctcac
5041 tcagatcatc ggttacattc agaccaccgg tcaagttctg aatatacgca ccataaatct
5101 tccagggatt ataggtatca ctcagactgg caaatggacc acagagcttc cagcagtggc
5161 cctaggtcac cactagatca gagatcttat ggctccagat ctccatttga acattcagtt
5221 gaacacaaaa gtacaccgga gcatacctgg agtagtcgga aaacataaca aaaactgata
5281 cttcgtcttt ctggactttt cttttagcca tatatcataa accaacacag taattgcctt
5341 acatgacttg aaagatataa acagatcttc tatcagtagc agtattgtta cttctttcca
5401 ggatgcaagg tctattatcc caacagaaga gaaaatattt ttatatttaa ggattatgct
5461 gcactgtact acaaaattgt agtacttttt tttgttttct tttttaaaga aatggaaaat
5521 gtttactatt acagggacct caacactgcc ctcccataca ggctggataa aactgttttt
5581 aagtcagtga ttttagactg acctccattt aaattatgtt tatatatgaa ctttactctg
5641 acctgtgatc atgtttcagg aaggaatgaa agagagttct ttcttaataa agaaaaacac
5701 tcaaggactt tgttcatttc caaagctact tgtttacatt gtacactgcg accaccttgc
5761 cgcttttcat
//