LOCUS BC114631 3142 bp mRNA linear HUM 18-MAR-2009
DEFINITION Homo sapiens small nuclear ribonucleoprotein 48kDa (U11/U12), mRNA
(cDNA clone MGC:138905 IMAGE:40084903), complete cds.
ACCESSION BC114631
VERSION BC114631.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3142)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3142)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (24-MAR-2006) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 19 Row: p Column: 4.
FEATURES Location/Qualifiers
source 1..3142
/db_xref="H-InvDB:HIT000387292"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:138905 IMAGE:40084903"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_283"
/note="Vector: pCR-Blunt II-TOPO with reversed insert;
Clone identification sequence tag: GGGGATTA"
gene 1..3142
/gene="SNRNP48"
/gene_synonym="dJ336K20B.1"
/gene_synonym="dJ512B11.2"
/db_xref="GeneID:154007"
/db_xref="HGNC:HGNC:21368"
CDS 29..1048
/gene="SNRNP48"
/gene_synonym="dJ336K20B.1"
/gene_synonym="dJ512B11.2"
/codon_start=1
/product="small nuclear ribonucleoprotein 48kDa (U11/U12)"
/protein_id="AAI14632.1"
/db_xref="GeneID:154007"
/db_xref="HGNC:HGNC:21368"
/translation="MEGEPPPVEERRRLQEELNEFVESGCRTLEEVTASLGWDLDSLD
LGEEEAAEDEVVICPYDSNHHMPKSSLAKHMASCRLRKMGYTKEEEDEMYNPEFFYEN
VKIPSITLNKDSQFQIIKQARTAVGKDSDCYNQRIYSSLPVEVPLNHKRFVCDLTQAD
RLALYDFVVEETKKKRSDSQIIENDSDLFVDLAAKINQDNSRKSPKSYLEILAEVRDY
KRRRQSYRAKNVHITKKSYTEVIRDVINVHMEELSNHWQEEQEKAEDDAEKNEERRSA
SVDSRQSGGSYLDAECSRHRRDRSRSPHKRKRNKDKDKNCESRRRKERDGERHHSHKR
RKQKI"
BASE COUNT 1017 a 499 c 650 g 976 t
ORIGIN
1 gcttcctctt ggcgggtggg ctgcagctat ggagggcgag cctccacctg tggaggagcg
61 gcggcggctg caggaggagc tgaacgagtt cgtggagagc ggctgccgga cgttggagga
121 ggtgaccgcg tccctgggct gggacctaga tagtctggat ctcggggaag aggaggcggc
181 ggaggatgaa gttgtgatat gtccatacga ttccaatcat cacatgccta aatcatcttt
241 ggcaaagcac atggcatctt gtagattgag gaaaatgggc tataccaaag aagaagagga
301 tgaaatgtat aatcctgagt ttttctatga aaatgtgaag ataccttcga ttactttgaa
361 taaggactca caattccaga taattaaaca agctagaact gcagttggga aagacagtga
421 ttgttataat caaagaattt attcttcatt gcctgttgaa gttcctttga atcacaaacg
481 gtttgtttgt gatctaactc aagctgatcg tcttgccctc tatgatttcg tagttgagga
541 gacaaagaaa aagcgctctg attctcaaat tattgaaaat gacagcgatc tctttgtaga
601 cttggctgcc aaaatcaatc aagacaatag tcgaaaaagt ccaaaatcct accttgaaat
661 cctggcagaa gtacgagatt ataaaagaag acgccagtcc tatagagcca agaatgttca
721 cataaccaag aaatcatata ctgaggtgat tcgagatgtg ataaatgtgc acatggaaga
781 actcagcaat cattggcaag aagagcaaga gaaggcagag gatgatgccg aaaagaatga
841 agaaaggcga tcagcttcag tagattcacg gcagtctggt ggaagctatt tggatgctga
901 gtgttcacga catagaaggg ataggagtag aagcccacat aaaagaaaaa gaaacaaaga
961 taaggataaa aactgtgagt cgagaagaag gaaagagagg gatggggaaa gacaccatag
1021 tcataaaaga agaaagcaaa aaatataaat gaagtacttg tacctatatt aattatgctt
1081 acgccatgat aaccaatata cagatatatt aattggaatt cctttgcata ggagaatgtt
1141 tttatgatct gtttagtgct tattattttt tttatgatct gtttagtgct tattattttc
1201 cagtaaatat gcttcaaacc atgagtacac tattaggccc tacaactttg ttttccttat
1261 attttattag atgatttgct tcctataact gatgttgttt tgttcgtttt gctaatatat
1321 gtatctcaaa attctttaag tcaatattta tcatatgtaa attaaacatg aatacattct
1381 catcttataa ctacatctta taaataaggc taataaccct tagaacacca cctgcggttc
1441 tgtcctcacc ccagtggcga ctactgttta ccactacact ggtgaattgt agtagggaaa
1501 aacaatctaa atattgaaga ggaatggcct aattaaaata tgatgtagtc ataggataga
1561 ttattgtatt ggagttaaaa gaaataatct agatccatat taacctggat tggtctcaaa
1621 aacataatgc tcagtgaaaa tagcaagttg tagaaagtta tatacaaatt atatatatgt
1681 acaaaacaat actatgcatt ctctatggct atataatgta cgtaaatcta tttttaaagg
1741 ttcagaggaa tccataccaa agttctaaca gcgagtagga ggtatagatg agagattagg
1801 ggtgcaaatc aggattggga gggtggtcag agggaacttt agctttatcc ataacattaa
1861 tttttttaaa aaataaggtc ttaatgtttc atttaattta aaatatactg tcatgttgtg
1921 ttttgtaaat caactgaatt gaggtactat ttacttagat ttattgcacc ctttttaagt
1981 gtgtatttta ttgggttttg acagattcat acctctgtgc agccactatc acgatcaaga
2041 tacaaatatt ttcattgccc ccaaaattct cataccccct ttcccaatca attcctctac
2101 ccctagccct aggcagccac agatttgctt ttggttaccg attagatcta tccattgtag
2161 aattcatgta aatagaatac tgtagtatgt actttgcctt cttcctctct gcagattttt
2221 gagattgatc cctgtgtgtc agttgtgcat tttttttgtt gctgagtagt atgttctatc
2281 ttatgtcaga tcattcacgt gagactttgg catgaaatgt taagcatccg acatctaaat
2341 agcaatattt tgaatactgg aaactcaggt taaagatttt gtttccaagt agaaatgaaa
2401 tcttattatt ttaataagta gctgacaatg acagaaagat tggatttgga tcagattggc
2461 tgttaggctt caggtatggg aaacagctct cagatttata aattggaaat caccaggtta
2521 cttgccaata tatagtcata ttgctgccat tgtacttaat ttctaaatat ataaaatcca
2581 catttaaaaa ttataaaagc aaggacttgg gagtgactga tgaatcatga aattgctgct
2641 tttatagatc aaaactactt gaatcatcag gaatttcata tttttcatat tgtgtgacaa
2701 cttataattt tgtttcaaat tgtgatttca ttgattttac taactggaag gaagaagagt
2761 aaaattggca tatttaggtt ttttgtagaa gaaagataca agtgaaaatt aggagtggat
2821 tggagaaatt ggggggaaat agaagagtac ggagaaagga agagattgaa aatgttacca
2881 gagttcttta aagctcacat tttatagtat cactgctaca aactatttaa tgaaatgtgg
2941 catcgggtga aaagaggcat ttgtttgatc cttgaacgaa ttaatctcac gtacttccct
3001 gtttgtggtt tgagcctttc actggatgtg agctacttga gagcagggtt tatgccttca
3061 tcagcgtgac cctgtgcctg cagcctcata ggtgttaatc tgtaatttta aattttgaca
3121 aaagcatttt cacagccctg cc
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