LOCUS BC114630 3141 bp mRNA linear HUM 18-MAR-2009
DEFINITION Homo sapiens small nuclear ribonucleoprotein 48kDa (U11/U12), mRNA
(cDNA clone MGC:138904 IMAGE:40084896), complete cds.
ACCESSION BC114630
VERSION BC114630.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3141)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3141)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (24-MAR-2006) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 19 Row: p Column: 2.
FEATURES Location/Qualifiers
source 1..3141
/db_xref="H-InvDB:HIT000387291"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:138904 IMAGE:40084896"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_283"
/note="Vector: pCR-Blunt II-TOPO with reversed insert"
gene 1..3141
/gene="SNRNP48"
/gene_synonym="dJ336K20B.1"
/gene_synonym="dJ512B11.2"
/db_xref="GeneID:154007"
/db_xref="HGNC:HGNC:21368"
CDS 28..1047
/gene="SNRNP48"
/gene_synonym="dJ336K20B.1"
/gene_synonym="dJ512B11.2"
/codon_start=1
/product="small nuclear ribonucleoprotein 48kDa (U11/U12)"
/protein_id="AAI14631.1"
/db_xref="GeneID:154007"
/db_xref="HGNC:HGNC:21368"
/translation="MEGEPPPVEERRRLQEELNEFVESGCRTLEEVTASLGWDLDSLD
LGEEEAAEDEVVICPYDSNHHMPKSSLAKHMASCRLRKMGYTKEEEDEMYNPEFFYEN
VKIPSITLNKDSQFQIIKQARTAVGKDSDCYNQRIYSSLPVEVPLNHKRFVCDLTQAD
RLALYDFVVEETKKKRSDSQIIENDSDLFVDLAAKINQDNSRKSPKSYLEILAEVRDY
KRRRQSYRAKNVHITKKSYTEVIRDVINVHMEELSNHWQEEQEKAEDDAEKNEERRSA
SVDSRQSGGSYLDAECSRHRRDRSRSPHKRKRNKDKDKNCESRRRKERDGERHHSHKR
RKQKI"
BASE COUNT 1017 a 499 c 649 g 976 t
ORIGIN
1 cttcctcttg gcgggtgggc tgcagctatg gagggcgagc ctccacctgt ggaggagcgg
61 cggcggctgc aggaggagct gaacgagttc gtggagagcg gctgccggac gttggaggag
121 gtgaccgcgt ccctgggctg ggacctagat agtctggatc tcggggaaga ggaggcggcg
181 gaggatgaag ttgtgatatg tccatacgat tccaatcatc acatgcctaa atcatctttg
241 gcaaagcaca tggcatcttg tagattgagg aaaatgggct ataccaaaga agaagaggat
301 gaaatgtata atcctgagtt tttctatgaa aatgtgaaga taccttcgat tactttgaat
361 aaggactcac aattccagat aattaaacaa gctagaactg cagttgggaa agacagtgat
421 tgttataatc aaagaattta ttcttcattg cctgttgaag ttcctttgaa tcacaaacgg
481 tttgtttgtg atctaactca agctgatcgt cttgccctct atgatttcgt agttgaggag
541 acaaagaaaa agcgctctga ttctcaaatt attgaaaatg acagcgatct ctttgtagac
601 ttggctgcca aaatcaatca agacaatagt cgaaaaagtc caaaatccta ccttgaaatc
661 ctggcagaag tacgagatta taaaagaaga cgccagtcct atagagccaa gaatgttcac
721 ataaccaaga aatcatatac tgaggtgatt cgagatgtga taaatgtgca catggaagaa
781 ctcagcaatc attggcaaga agagcaagag aaggcagagg atgatgccga aaagaatgaa
841 gaaaggcgat cagcttcagt agattcacgg cagtctggtg gaagctattt ggatgctgag
901 tgttcacgac atagaaggga taggagtaga agcccacata aaagaaaaag aaacaaagat
961 aaggataaaa actgtgagtc gagaagaagg aaagagaggg atggggaaag acaccatagt
1021 cataaaagaa gaaagcaaaa aatataaatg aagtacttgt acctatatta attatgctta
1081 cgccatgata accaatatac agatatatta attggaattc ctttgcatag gagaatgttt
1141 ttatgatctg tttagtgctt attatttttt ttatgatctg tttagtgctt attattttcc
1201 agtaaatatg cttcaaacca tgagtacact attaggccct acaactttgt tttccttata
1261 ttttattaga tgatttgctt cctataactg atgttgtttt gttcgttttg ctaatatatg
1321 tatctcaaaa ttctttaagt caatatttat catatgtaaa ttaaacatga atacattctc
1381 atcttataac tacatcttat aaataaggct aataaccctt agaacaccac ctgcggttct
1441 gtcctcaccc cagtggcgac tactgtttac cactacactg gtgaattgta gtagggaaaa
1501 acaatctaaa tattgaagag gaatggccta attaaaatat gatgtagtca taggatagat
1561 tattgtattg gagttaaaag aaataatcta gatccatatt aacctggatt ggtctcaaaa
1621 acataatgct cagtgaaaat agcaagttgt agaaagttat atacaaatta tatatatgta
1681 caaaacaata ctatgcattc tctatggcta tataatgtac gtaaatctat ttttaaaggt
1741 tcagaggaat ccataccaaa gttctaacag cgagtaggag gtatagatga gagattaggg
1801 gtgcaaatca ggattgggag ggtggtcaga gggaacttta gctttatcca taacattaat
1861 ttttttaaaa aataaggtct taatgtttca tttaatttaa aatatactgt catgttgtgt
1921 tttgtaaatc aactgaattg aggtactatt tacttagatt tattgcaccc tttttaagtg
1981 tgtattttat tgggttttga cagattcata cctctgtgca gccactatca cgatcaagat
2041 acaaatattt tcattgcccc caaaattctc ataccccctt tcccaatcaa ttcctctacc
2101 cctagcccta ggcagccaca gatttgcttt tggttaccga ttagatctat ccattgtaga
2161 attcatgtaa atagaatact gtagtatgta ctttgccttc ttcctctctg cagatttttg
2221 agattgatcc ctgtgtgtca gttgtgcatt ttttttgttg ctgagtagta tgttctatct
2281 tatgtcagat cattcacgtg agactttggc atgaaatgtt aagcatccga catctaaata
2341 gcaatatttt gaatactgga aactcaggtt aaagattttg tttccaagta gaaatgaaat
2401 cttattattt taataagtag ctgacaatga cagaaagatt ggatttggat cagattggct
2461 gttaggcttc aggtatggga aacagctctc agatttataa attggaaatc accaggttac
2521 ttgccaatat atagtcatat tgctgccatt gtacttaatt tctaaatata taaaatccac
2581 atttaaaaat tataaaagca aggacttggg agtgactgat gaatcatgaa attgctgctt
2641 ttatagatca aaactacttg aatcatcagg aatttcatat ttttcatatt gtgtgacaac
2701 ttataatttt gtttcaaatt gtgatttcat tgattttact aactggaagg aagaagagta
2761 aaattggcat atttaggttt tttgtagaag aaagatacaa gtgaaaatta ggagtggatt
2821 ggagaaattg gggggaaata gaagagtacg gagaaaggaa gagattgaaa atgttaccag
2881 agttctttaa agctcacatt ttatagtatc actgctacaa actatttaat gaaatgtggc
2941 atcgggtgaa aagaggcatt tgtttgatcc ttgaacgaat taatctcacg tacttccctg
3001 tttgtggttt gagcctttca ctggatgtga gctacttgag agcagggttt atgccttcat
3061 cagcgtgacc ctgtgcctgc agcctcatag gtgttaatct gtaattttaa attttgacaa
3121 aagcattttc acagccctgc c
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