LOCUS BC114520 3033 bp mRNA linear HUM 18-AUG-2006
DEFINITION Homo sapiens prostaglandin F2 receptor negative regulator, mRNA
(cDNA clone IMAGE:40036497), partial cds.
ACCESSION BC114520
VERSION BC114520.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3033)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3033)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (10-MAR-2006) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 19 Row: h Column: 5.
FEATURES Location/Qualifiers
source 1..3033
/db_xref="H-InvDB:HIT000340725"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:40036497"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_282"
/note="Vector: pCR-Blunt II-TOPO; Clone identification
sequence tag: TAATATGA"
gene <1..3033
/gene="PTGFRN"
/gene_synonym="CD315"
/gene_synonym="CD9P-1"
/gene_synonym="EWI-F"
/gene_synonym="FLJ11001"
/gene_synonym="FPRP"
/gene_synonym="KIAA1436"
/gene_synonym="SMAP-6"
/db_xref="GeneID:5738"
/db_xref="HGNC:HGNC:9601"
/db_xref="MIM:601204"
CDS <1..2218
/gene="PTGFRN"
/gene_synonym="CD315"
/gene_synonym="CD9P-1"
/gene_synonym="EWI-F"
/gene_synonym="FLJ11001"
/gene_synonym="FPRP"
/gene_synonym="KIAA1436"
/gene_synonym="SMAP-6"
/codon_start=2
/product="PTGFRN protein"
/protein_id="AAI14521.1"
/db_xref="GeneID:5738"
/db_xref="HGNC:HGNC:9601"
/db_xref="MIM:601204"
/translation="SGAAGAGRGGGGEAAGKEEEGEPFELRCTAASASPLHTHLALLW
EVHRGPARRSVLALTHEGRFHPGLGYEQRYHSGDVRLDTVGSDAYRLSVSRALSADQG
SYRCIVSEWIAEQGNWQEIQEKAVEVATVVIQPTVLRAAVPKNVSVAEGKELDLTCNI
TTDRADDVRPEVTWSFSRMPDSTLPGSRVLARLDRDSLVHSSPHVALSHVDARSYHLL
VRDVSKENSGYYYCHVSLWAPGHNRSWHKVAEAVSSPAGVGVTWLEPDYQVYLNASKV
PGFADDPTELACRVVDTKSGEANVRFTVSWYYRMNRRSDNVVTSELLAVMDGDWTLKY
GERSKQRAQDGDFIFSKEHTDTFNFRIQRTTEEDRGNYYCVVSAWTKQRNNSWVKSKD
VFSKPVNIFWALEDSVLVVKARQPKPFFAAGNTFEMTCKVSSKNIKSPRYSVLIMAEK
PVGDLSSPNETKYIISLDQDSVVKLENWTDASRVDGVVLEKVQEDEFRYRMYQTQVSD
AGLYRCMVTAWSPVRGSLWREAATSLSNPIEIDFQTSGPIFNASVHSDTPSVIRGDLI
KLFCIITVEGAALDPDDMAFDVSWFAVHSFGLDKAPVLLSSLDRKGIVTTSRRDWKSD
LSLERVSVLEFLLQVHGSEDQDFGNYYCSVTPWVKSPTGSWQKEAEIHSKPVFITVKM
DVLNAFKYPLLIGVGLSTVIGLLSCLIGYCSSHWCCKKEVQETRRERRRLMSMEMD"
BASE COUNT 669 a 769 c 871 g 724 t
ORIGIN
1 ctctggagca gccggagctg gaagaggagg aggaggagag gcggcgggga aggaggagga
61 gggggagccc ttcgagctgc gctgcaccgc cgcctccgcc tcgccgctgc acacgcacct
121 ggcgctgctg tgggaggtgc accgcggccc ggccaggcgg agcgtcctcg ccctgaccca
181 cgagggcagg ttccacccgg gcctggggta cgagcagcgc taccacagtg gggacgtgcg
241 cctcgacacc gtgggcagcg acgcctaccg cctctcagtg tcccgggctc tgtctgccga
301 ccagggctcc tacaggtgta tcgtcagcga gtggatcgcc gagcagggca actggcagga
361 aatccaagaa aaggccgtgg aagttgccac cgtggtgatc cagccgacag ttctgcgagc
421 agctgtgccc aagaatgtgt ctgtggctga aggaaaggaa ctggacctga cctgtaacat
481 cacaacagac cgagccgatg acgtccggcc cgaggtgacg tggtccttca gcaggatgcc
541 tgacagcacc ctacctggct cccgcgtgtt ggcgcggctt gaccgtgatt ccctggtgca
601 cagctcgcct catgttgctt tgagtcatgt ggatgcacgc tcctaccatt tactggttcg
661 ggatgttagc aaagaaaact ctggctacta ttactgccac gtgtccctgt gggcacccgg
721 acacaacagg agctggcaca aagtggcaga ggccgtgtct tccccagctg gtgtgggtgt
781 gacctggcta gaaccagact accaggtgta cctgaatgct tccaaggtcc ccgggtttgc
841 ggatgacccc acagagctgg catgccgggt ggtggacacg aagagtgggg aggcgaatgt
901 ccgattcacg gtttcgtggt actacaggat gaaccggcgc agcgacaatg tggtgaccag
961 cgagctgctt gcagtcatgg acggggactg gacgctaaaa tatggagaga ggagcaagca
1021 gcgggcccag gatggagact ttattttttc taaggaacat acagacacgt tcaatttccg
1081 gatccaaagg actacagagg aagacagagg caattattac tgtgttgtgt ctgcctggac
1141 caaacagcgg aacaacagct gggtgaaaag caaggatgtc ttctccaagc ctgttaacat
1201 attttgggca ttagaagatt ccgtgcttgt ggtgaaggcg aggcagccaa agcctttctt
1261 tgctgccgga aatacatttg agatgacttg caaagtatct tccaagaata ttaagtcgcc
1321 acgctactct gttctcatca tggctgagaa gcctgtcggc gacctctcca gtcccaatga
1381 aacgaagtac atcatctctc tggaccagga ttctgtggtg aagctggaga attggacaga
1441 tgcatcacgg gtggatggcg ttgttttaga aaaagtgcag gaggatgagt tccgctatcg
1501 aatgtaccag actcaggtct cagacgcagg gctgtaccgc tgcatggtga cagcctggtc
1561 tcctgtcagg ggcagccttt ggcgagaagc agcaaccagt ctctccaatc ctattgagat
1621 agacttccaa acctcaggtc ctatatttaa tgcttctgtg cattcagaca caccatcagt
1681 aattcgggga gatctgatca aattgttctg tatcatcact gtcgagggag cagcactgga
1741 tccagatgac atggcctttg atgtgtcctg gtttgcggtg cactcttttg gcctggacaa
1801 ggctcctgtg ctcctgtctt ccctggatcg gaagggcatc gtgaccacct cccggaggga
1861 ctggaagagc gacctcagcc tggagcgcgt gagtgtgctg gaattcttgc tgcaagtgca
1921 tggctccgag gaccaggact ttggcaacta ctactgttcc gtgactccat gggtgaagtc
1981 accaacaggt tcctggcaga aggaggcaga gatccactcc aagcccgttt ttataactgt
2041 gaagatggat gtgctgaacg ccttcaagta tcccttgctg atcggcgtcg gtctgtccac
2101 ggtcatcggg ctcctgtcct gtctcatcgg gtactgcagc tcccactggt gttgtaagaa
2161 ggaggttcag gagacacggc gcgagcgccg caggctcatg tcgatggaga tggactaggc
2221 tggcccggga ggggagtgac agagggacgt tctaggagca attggggcaa gaagaggaca
2281 gtgatatttt aaaacaaagt gtgttacact aaaaaccagt cctctctaat ctcaggtggg
2341 acttggcgct ctctcttttc tgcatgtcaa gttctgagcg cggacatgtt taccagcaca
2401 cggctcttct tcccacggca ctttctgatg taacaatcga gtgtgtgttt tcccaactgc
2461 agctttttaa tggttaacct tcatctaatt ttttttctcc cactggttta tagatcctct
2521 gacttgtgtg tgtttatagc ttttgtttcg cggggttgtg gtgaggaagg ggtgatggca
2581 tgcggagttc tttatcttca gtgagaatgt gcctgcccgc ctgagagcca gcttccgcgt
2641 tggaggcacg tgttcagaga gctgctgagc gccaccctct acccggctga cagacaacac
2701 agacctgtgc cgaaggctaa tttgtggctt ttacgaccct accccacccc ctgttttcag
2761 gggtttagac tacatttgaa atccaaactt ggagtatata acttcttatt gagcccaact
2821 gctttttttt tttttttttg cttctctgcc ccttttccat ttcttttgta tttgttttct
2881 gtgagagcac tgaaatggca gccctggaat ctacaatttg gctctccact gagcacctta
2941 tcttgccacc ttagccttaa gaatgaatat gaagaaaaat acacagccac ctctgtccag
3001 ggcagtaaga agggctgcaa ggaaggggag gat
//