LOCUS BC114365 2418 bp mRNA linear HUM 19-MAR-2009
DEFINITION Homo sapiens tetratricopeptide repeat domain 7A, mRNA (cDNA clone
MGC:134830 IMAGE:40038218), complete cds.
ACCESSION BC114365
VERSION BC114365.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2418)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2418)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-MAR-2006) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Oct 4, 2006 this sequence version replaced BC114365.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 18 Row: h Column: 12
The stop codon of the CDS annotated on this record is located > 55
bases upstream of a splice junction, and therefore the mRNA is
predicted to be subject to nonsense-mediated mRNA decay (NMD).
FEATURES Location/Qualifiers
source 1..2418
/db_xref="H-InvDB:HIT000340662"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:134830 IMAGE:40038218"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_282"
/note="Vector: pCR-Blunt II-TOPO; Clone identification
sequence tag: TGAAGG sequenced from the reverse primer"
gene 1..2418
/gene="TTC7A"
/db_xref="GeneID:57217"
/db_xref="HGNC:HGNC:19750"
/db_xref="MIM:609332"
CDS 904..2418
/gene="TTC7A"
/codon_start=1
/product="TTC7A protein"
/protein_id="AAI14366.1"
/db_xref="GeneID:57217"
/db_xref="HGNC:HGNC:19750"
/db_xref="MIM:609332"
/translation="MATRDVVLSRVPEQEEDRTVSLQNAAAIYDLLSITLGRRGQYVM
LSECLERAMKFAFGEFHLWYQVALSMVACGKSAYAVSLLRECVKLRPSDPTVPLMAAK
VCIGSLRWLEEAEHFAMMVISLGEEAGEFLPKGYLALGLTYSLQATDATLKSKQDELH
RKALQTLERAQQLAPSDPQVILYVSLQLALVRQISSAMEQLQEALKVRKDDAHALHLL
ALLFSAQKHHQHALDVVNMAITEHPGNFNLMFTKVKLEQVLKGPEEALVTCRQVLRLW
QTLYSFSQLGGLEKDGSFGEGLTMKKQSGMHLTLPDAHDADSGSRRASSIAASRLEEA
MSELTMPSSVLKQGPMQLWTTLEQIWLQAAELFMEQQHLKEAGFCIQEAAGLFPTSHS
VLYMRGRLAEVKGNLEEAKQLYKEALTVNPDGVRIMHSLGLMLSRLGHKSLAQKVLRD
AVERQSTCHEAWQGLGEVLQAQGQNEAAVDCFLTALELEASSPVLPFSIIPREL"
BASE COUNT 517 a 700 c 751 g 450 t
ORIGIN
1 tggctgcgaa gggcgcgcac ggctcctacc tgaaggtgga gagcgagctg gagcgctgcc
61 gcgccgaggg ccactgggac cgcatgccgg agctggtccg gcagctgcag acgctgagca
121 tgcccggcgg cggaggtaac aggcgaggca gcccgagcgc agcgttcacc tttccggaca
181 ccgatgactt tgggaaattg ctgctggctg aggccctcct ggagcagtgt ttgaaggaga
241 accatgccaa aataaaagac tccatgcctt tgctggagaa gaatgagccg aagatgagcg
301 aagccaaaaa ttatctaagc agtatcctta accatgggag gctctcgcca cagtacatgt
361 gtgaggccat gctgatcctg ggcaaactgc attacgtgga gggctcatac cgagatgcca
421 tcagcatgta cgcacgggcc gggattgatg acatgtccat ggagaacaag cccctgtatc
481 agatgcggct gctgtcggag gcttttgtca tcaaaggcct ctctctggaa cgcctaccca
541 actccatcgc ctcccgcttc cgcctgacag agagggagga ggaagtgatc acctgttttg
601 agagggcctc ctggatcgct caggtgttcc tgcaggaatt ggagaagacc acaaataaca
661 gcacgtcgag gcatctgaaa ggctgtcacc cgcttgacta tgagctcacc tacttcctgg
721 aagctgccct ccagagcgcc tatgtgaaaa acctgaagaa ggggaacatc gtgaagggca
781 tgagagagct ccgggaggtg ctgcggactg tggagaccaa agcaactcag aacttcaaag
841 tgcctctact gccccaagga caacatcgag gaagccctcc tgctcctcct catcagcgaa
901 tccatggcaa ctcgagatgt ggtgctgagc cgggtgccgg agcaggagga ggaccggaca
961 gtgagcttgc agaatgccgc agccatctat gacctcctga gcatcacgtt gggcagaagg
1021 ggacagtacg tcatgctctc ggagtgcctg gagcgagcca tgaagtttgc gtttggagaa
1081 tttcaccttt ggtaccaggt ggccctctcc atggtggctt gtgggaagtc agcctacgct
1141 gtgtccctgc tgcgggagtg tgtgaagttg cggccctcgg accccaccgt gcccctgatg
1201 gccgcgaagg tctgcatcgg gtcccttcgc tggctagagg aagcagagca ctttgccatg
1261 atggtgatca gcctcggaga ggaagccggg gagttcctcc ccaagggcta cctggctctg
1321 ggtctcacct atagcctgca ggccaccgac gccaccctga agtccaagca agatgaattg
1381 caccggaagg cactgcagac gctggagagg gctcagcagc tggcgcccag tgacccccag
1441 gtcatcctct atgtctcgct gcagctggcc ctcgtccgac agatctccag tgccatggag
1501 cagctgcagg aggccctgaa ggtacgcaag gatgatgccc acgccctcca cctgctggca
1561 ctgctcttct ctgcccagaa gcaccaccag catgccctgg atgttgtcaa catggccatc
1621 accgagcacc ctgggaactt caacctgatg ttcaccaagg tgaagctgga gcaggtgctg
1681 aaaggcccag aggaagccct cgtgacctgc agacaagtgc tgaggctgtg gcagaccctg
1741 tacagcttct cccagctggg aggcctagaa aaggatggca gcttcggtga gggcctcacc
1801 atgaagaagc agagtggcat gcacctgact ttgcctgatg cccatgatgc agactctggc
1861 tcccggcggg cttcgtccat cgccgcctcc cggctggagg aggccatgtc agagctgact
1921 atgccctctt cggtcctgaa gcagggcccc atgcagctgt ggaccacgct ggaacagatc
1981 tggctgcagg ctgctgagct gttcatggag cagcagcacc tcaaggaagc aggtttctgc
2041 atccaggagg cggcgggcct cttccccact tctcactcag tactctatat gcggggccgg
2101 ctggctgagg tgaagggcaa cctggaggag gccaagcagc tgtacaagga ggcgctcacg
2161 gtgaacccag atggcgtgcg catcatgcat agcctgggtc tgatgctgag tcggctgggc
2221 cacaagagct tggcccagaa ggtgcttcgt gatgccgtgg agaggcagag tacgtgccac
2281 gaggcgtggc agggcctggg cgaggtgctg caggcccagg gccagaacga ggctgccgtt
2341 gactgcttcc tcaccgccct tgagctggag gccagcagcc ctgtactgcc cttctccatc
2401 atccccagag agctctga
//