LOCUS BC114338 862 bp mRNA linear HUM 04-OCT-2006
DEFINITION Homo sapiens C-type lectin domain family 4, member C, mRNA (cDNA
clone MGC:125789 IMAGE:40030323), complete cds.
ACCESSION BC114338
VERSION BC114338.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 862)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 862)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-MAR-2006) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 18 Row: f Column: 5.
FEATURES Location/Qualifiers
source 1..862
/db_xref="H-InvDB:HIT000340648"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:125789 IMAGE:40030323"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_282"
/note="Vector: pCR-Blunt II-TOPO; Clone identification
sequence tag: NA"
gene 1..862
/gene="CLEC4C"
/gene_synonym="BDCA2"
/gene_synonym="CD303"
/gene_synonym="DLEC"
/gene_synonym="HECL"
/gene_synonym="PRO34150"
/db_xref="GeneID:170482"
/db_xref="HGNC:HGNC:13258"
/db_xref="MIM:606677"
CDS 102..743
/gene="CLEC4C"
/gene_synonym="BDCA2"
/gene_synonym="CD303"
/gene_synonym="DLEC"
/gene_synonym="HECL"
/gene_synonym="PRO34150"
/codon_start=1
/product="C-type lectin domain family 4, member C"
/protein_id="AAI14339.1"
/db_xref="GeneID:170482"
/db_xref="HGNC:HGNC:13258"
/db_xref="MIM:606677"
/translation="MVPEEEPQDREKGLWWFQLKVWSMAVVSILLLSVCFTVSSVVPH
NFMYSKTVKRLSKLREYQQYHPSLTCVMEGKDIEDWSCCPTPWTSFQSSCYFISTGMQ
SWTKSQKNCSVMGADLVVINTREEQDFIIQNLKRNSSYFLGLSDPGGRRHWQWVDQTP
YNENVTFWHSGEPNNLDERCAIINFRSSEEWGWNDIHCHVPQKSICKMKKIYI"
BASE COUNT 250 a 171 c 206 g 235 t
ORIGIN
1 ttgaaagaac cacaccccga aagtaacatc tttggagaaa gtgatacaag agcttctgca
61 cccacctgat agaggaagtc caaagggtgt gcgcacacac aatggtgcct gaagaagagc
121 ctcaagaccg agagaaagga ctctggtggt tccagttgaa ggtctggtcc atggcagtcg
181 tatccatctt gctcctcagt gtctgtttca ctgtgagttc tgtggtgcct cacaatttta
241 tgtatagcaa aactgtcaag aggctgtcca agttacgaga gtatcaacag tatcatccaa
301 gcctgacctg cgtcatggaa ggaaaggaca tagaagattg gagctgctgc ccaacccctt
361 ggacttcatt tcagtctagt tgctacttta tttctactgg gatgcaatct tggactaaga
421 gtcaaaagaa ctgttctgtg atgggggctg atctggtggt gatcaacacc agggaagaac
481 aggatttcat cattcagaat ctgaaaagaa attcttctta ttttctgggg ctgtcagatc
541 cagggggtcg gcgacattgg caatgggttg accagacacc atacaatgaa aatgtcacat
601 tctggcactc aggtgaaccc aataaccttg atgagcgttg tgcgataata aatttccgtt
661 cttcagaaga atggggctgg aatgacattc actgtcatgt acctcagaag tcaatttgca
721 agatgaagaa gatctacata taaatgaaat attctccctg gaaatgtgtt tgggttggca
781 tccaccgttg tagaaagcta aattgatttt ttaatttatg tgtaagtttt gtacaaggaa
841 tgcccctaaa atgtttcagg ta
//