LOCUS BC114214 1676 bp mRNA linear HUM 24-JUL-2006
DEFINITION Homo sapiens family with sequence similarity 78, member B, mRNA
(cDNA clone MGC:131653 IMAGE:5588830), complete cds.
ACCESSION BC114214
VERSION BC114214.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1676)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1676)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-MAR-2006) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Invitrogen
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 255 Row: g Column: 15
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 63003927.
FEATURES Location/Qualifiers
source 1..1676
/db_xref="H-InvDB:HIT000340639"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:131653 IMAGE:5588830"
/tissue_type="Ovary, pooled from 3 adults"
/clone_lib="NIH_MGC_125"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1676
/gene="FAM78B"
/db_xref="GeneID:149297"
/db_xref="HGNC:HGNC:13495"
CDS 591..1376
/gene="FAM78B"
/codon_start=1
/product="family with sequence similarity 78, member B"
/protein_id="AAI14215.1"
/db_xref="GeneID:149297"
/db_xref="HGNC:HGNC:13495"
/translation="MGCIQSITCKARIRRENIVVYDVCATIDQCPTRIEETSPIVLRY
KTPYFKASARVVMPPIPRHETWVVGWIQACNQMEFFNTYSDLGMSSWELPDLREGRVK
AISDSDGVSYPWYGNTTETVTLVGPTNKISRFSVSMNDNFYPSVTWAVPVSDSNVPLL
TRIKRDQSFTTWLVAMNTTTKEKIILQTIKWRMRVDIEVDPLQLLGQRARLVGRTQQE
QPRILSRMEPIPPNALVKPNANDAQVLMWRPKRGPPLVVIPPK"
BASE COUNT 372 a 530 c 515 g 259 t
ORIGIN
1 gtcctgtgct gctccagccg ttggggctct ccaccccggg ccacagcctc ctggcgcccc
61 ccgggccgag gcagccgggc cgaggagtgt cggtgtggtc cggctacggg gcggggccgg
121 cggcggctgc tgctgctgcc gccgcggagg cagacagacc gggcgctgcc accgccgccc
181 tcccccggct ccatgccgcc gccgctgccg cctcctcctc tccggcgagg ggcggggggc
241 tccggcccgg ggtgggcacc attcctcgca gcgccgctcc cctccctgcc ctccgcccgg
301 gcgctggagc cggcgagggc acccgccgcc tcctaggagt gcatcctccg cgcgccctgc
361 cggagcgagg gggcgggcgt gggcggacgt cggggcagcg gggaccccgc gcggctgcaa
421 gaggaggggg cttccccaag gatgcccggc ggctccccgc tcctaggtgc gagctgagtc
481 tgaccgggag cgagcggcgc gtcgccatgc cggcgtgacg ggcgcccccg gctgcccgcg
541 cgggcccccg cgctgcccca cgccgcgccg tgccggcacc gggctgcagg atgggctgta
601 tccaaagcat cacctgcaag gcgcggatcc ggcgcgagaa catcgtggtg tacgatgtgt
661 gcgccaccat cgaccagtgc cccacgcgca tcgaggagac ctcgcccatc gtcctgcgct
721 acaagacccc ctacttcaaa gcctccgccc gcgtggtcat gccccccatc ccccgccacg
781 agacctgggt ggtgggctgg attcaggcgt gcaatcagat ggagttcttc aacacctaca
841 gcgacctggg catgtcaagc tgggaactgc ctgacttgag ggaagggaga gtaaaagcca
901 tcagtgactc agatggggtg agctaccctt ggtacgggaa caccacagaa actgtcaccc
961 tggttggccc caccaacaag atctccaggt tctccgtcag catgaatgac aacttctacc
1021 ccagtgtgac atgggcagtg cctgtgagtg acagcaatgt gccactgctc acaagaatca
1081 agagagacca aagtttcacg acctggctgg tggccatgaa caccaccaca aaggagaaga
1141 tcattctgca gaccatcaag tggaggatga gggtggacat tgaagtggac cctcttcagc
1201 tcttggggca gcgggcccgg ctggtgggca ggactcagca ggagcagccc cggatcctga
1261 gccggatgga acccatcccc cctaatgcac tagtgaaacc caatgccaat gatgcccagg
1321 tcctcatgtg gaggcccaag cgggggccac ctctggttgt gatccctcct aagtagaagc
1381 agactggcct gactgtgtgt ggatcacacg cctctgagac atgcagtgag ggtgccaggg
1441 gtggcaggag ccaaacagag tttctgagcc aaagcagacc tctcggtttg ccagcctttg
1501 cagccacttt tgaagagtag ggctgctcct tgggtggtag aaccataatc cttaggaaaa
1561 atcccttcct cttaggaata aagaaatcac tgatttgaaa aaaaaaaaaa aaaaaaaaaa
1621 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaa
//