LOCUS BC113840 1988 bp mRNA linear HUM 06-JUN-2006
DEFINITION Homo sapiens scavenger receptor cysteine rich domain containing,
group B (4 domains), mRNA (cDNA clone IMAGE:40001325), complete
cds.
ACCESSION BC113840
VERSION BC113840.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1988)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1988)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (21-FEB-2006) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 19 Row: a Column: 7
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1988
/db_xref="H-InvDB:HIT000340568"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:40001325"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_283"
/note="Vector: pCR-Blunt II-TOPO with reversed insert;
Clone identification sequence tag: TTTTGTCG"
gene 1..1988
/gene="SRCRB4D"
/gene_synonym="S4D-SRCRB"
/gene_synonym="SRCRB-S4D"
/db_xref="GeneID:136853"
/db_xref="HGNC:HGNC:14461"
/db_xref="MIM:607639"
CDS 232..1056
/gene="SRCRB4D"
/gene_synonym="S4D-SRCRB"
/gene_synonym="SRCRB-S4D"
/codon_start=1
/product="SRCRB4D protein"
/protein_id="AAI13841.1"
/db_xref="GeneID:136853"
/db_xref="HGNC:HGNC:14461"
/db_xref="MIM:607639"
/translation="MHKEAEMLIGPQLDEKRWGWRLGDGSAAPPFLPQALSFLLLLPL
ASALQPTPLPFQELRLVGGPSRCRGRLEVMHGGSWGSVCDDDWDVVDANVVCRQLGCG
LALPVPRPLAFGQGRGPILLDNVECRGQEAALSECGSRGWGVHNCFHYEDVAVLCDEF
LPTQPPTRKMLTSRAPPTTLPNGKSEGSVRLVGGANLCQGRVEILHSGLWGTVCDDDW
GLPDAAVVCRQLGCGAAMAATTNAFFGYGTGHILLDNVHCEGGEPRLAACQSKTVS"
BASE COUNT 394 a 594 c 581 g 419 t
ORIGIN
1 tgcctctgct caccttccag ctgtggaaag aaaagaagaa acgcctgtgt tgatttccat
61 ttggaagatc cttcctcctc ctaaacttcc aggggcagac aaagtgattc gatcttggat
121 tgactgtaga agaagggaca gaaagagccc agaacattcc cccagatgtt ccaactgtga
181 cttctccctg gcgccttgat gggagcatct gaaacaccct tcaccatcta gatgcacaag
241 gaagcagaga tgctaattgg tccccagctg gatgagaagc gctgggggtg gaggttggga
301 gatgggagtg ctgcccctcc cttcctcccc caagccctgt ctttccttct cctcctgcca
361 ctggccagcg ccctacagcc cactccactg ccctttcaag agctgaggct ggtggggggc
421 cccagccgct gccggggccg cctggaagtc atgcacggtg gctcctgggg cagcgtctgt
481 gatgacgact gggacgtggt ggacgccaac gtagtgtgtc gccagctggg ctgtggcctg
541 gcactgcccg tgccacggcc ccttgccttt ggccaaggcc gaggccccat cctgctggac
601 aacgtggagt gccgcgggca ggaagctgcg ctgagcgagt gcggcagccg cggctggggc
661 gtccacaatt gctttcacta cgaggatgtg gctgtcctgt gtgatgaatt cttgccaacg
721 cagcccccaa caaggaagat gttaaccagt agagcacctc ctacgacact gccgaatgga
781 aaaagtgagg gcagcgtacg cctggtaggg ggcgcgaacc tgtgtcaggg ccgagtggag
841 atcctgcaca gtggcctgtg gggcaccgtg tgtgacgacg actgggggct gccggatgcc
901 gctgtggtct gtcgtcagct gggctgcggg gcggccatgg ccgccaccac caacgccttc
961 ttcggctatg gcaccggaca catcctgctg gacaacgtgc actgcgaagg cggcgagccc
1021 cgcctggcag cctgccagag caagactgtc tcttaaaaga aaatgaccaa gtgtggtggc
1081 tcacacctac aatcccagca ctttgggagg ctgaggtggg cagatcactt gaggtcagga
1141 gttcaagacc agcctggtca acatgatgaa tccccgtctc tactaaaaat acaaaaattg
1201 actgggcatg gtggtgcaca cctgaaatct cagcctcccc aggcatctac gtctggtcaa
1261 tggagcccac cgatgcgagg gacgtgtaga gctctaccta gggcaacggt ggggcactgt
1321 ctgtgatgat gcttgggacc tgcgggcagc cggtgtcctg tgccgccagc tgggctgtgg
1381 ccaggccctc gcagcccctg gcgaggctca ctttggccca ggccgaggcc ccattctcct
1441 ggacaatgtc aagtgccgtg gggaagaaag tgctctgctg ctctgctctc atatccgctg
1501 ggatgcccac aactgtgacc acagcgagga tgccagtgtc ctgtgccagc cttcatgacc
1561 cagcccgctc tgcagaccac ctcttcttct gggagctgtg acctcccttc ctcctccagg
1621 aagccctcct cttgtgatga ctacagttca ctttgcccct ccttcccttg cctgggagag
1681 agcctaccta gacagtgcag tcctgcttgg gggagcctgg ctgtaccccc gtccacttac
1741 tgcgtgacct cagcctgtca tcgactgttg tgagcccaat tcagtgaaag ctcctgtggt
1801 tttgctcagc caaaaccaaa acgaggggaa gaggatgatt cctaactctt ctgtttggtg
1861 gggctctttt tatagcacca gactctgcct tccttgacct agatccagga ggctcagggg
1921 ctctttaaat ggggtatctc ctcttccccc aacccatctt gggatcccca agaagaggga
1981 aggcagga
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