LOCUS BC113745 2734 bp mRNA linear HUM 06-JUN-2006 DEFINITION Homo sapiens cadherin 9, type 2 (T1-cadherin), mRNA (cDNA clone MGC:125386 IMAGE:40011941), complete cds. ACCESSION BC113745 VERSION BC113745.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2734) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2734) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (21-FEB-2006) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Baylor Human Genome Sequencing Center cDNA Library Preparation: Baylor Human Genome Sequencing Center cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAM Plate: 12 Row: i Column: 21. FEATURES Location/Qualifiers source 1..2734 /db_xref="H-InvDB:HIT000340546" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:125386 IMAGE:40011941" /tissue_type="PCR rescued clones" /clone_lib="NIH_MGC_282" /note="Vector: pCR-Blunt II-TOPO; Clone identification sequence tag: AGTTAGTC" gene 1..2734 /gene="CDH9" /db_xref="GeneID:1007" /db_xref="HGNC:HGNC:1768" /db_xref="MIM:609974" CDS 132..2501 /gene="CDH9" /codon_start=1 /product="cadherin 9, type 2, preproprotein" /protein_id="AAI13746.1" /db_xref="GeneID:1007" /db_xref="HGNC:HGNC:1768" /db_xref="MIM:609974" /translation="MRTYHCIPLFIWTYMFHTVDTILLQEKPNSYLSSKKIVGLTKDD GKMLRRTKRGWMWNQFFLLEEYTGTDTQYVGKLHTDQDKGDGNLKYILTGDGAGSLFV IDENTGDIHAAKKLDREEKSLYILRAKAIDRKTGRQVEPESEFIIKIHDINDNEPKFT KDLYTASVPEMSGVGTSVIQVTATDADDANYGNSAKVVYSILQGQPYFSVDPESGIIK TALPDMSRENREQYQVVIQAKDMGGQMGGLSGTTTVNITLTDVNNNPPRFPQSTYQFN SPESVPLGTHLGRIKANDPDVGENAEMEYSIAEGDGADMFDVITDKDTQEGIITVKQN LDFENQMLYTLRVDASNTHPDPRFLHLGPFKDTAVVKISVEDIDEPPVFTKVSYLIEV DEDVKEGSIIGQVTAYDPDARNNLIKYSVDRHTDMDRIFGIHSENGSIFTLKALDRES SPWHNITVTATEINNPKQSSHIPVFIRILDINDHAPEFAMYYETFVCENAKPGQLIQT VSVMDKDDPPRGHKFFFEPVPEFTLNPNFTIVDNKDNTAGIMTRKDGYSRNKMSTYLL PILIFDNDYPIQSSTGTLTIRVCACDNQGNMQSCTAEALILSAGLSTGALVAILLCVL ILLILVVLFAALKRQRKKEPLIISKDDVRDNIVTYNDEGGGEEDTQAFDIGTLRNPEA REDSKLRRDVMPETIFQIRRTVPLWENIDVQDFIHRRLKENDADPSAPPYDSLATYAY EGNDSIADSLSSLESLTADCNQDYDYLSDWGPRFKKLADMYGGDDSDRD" BASE COUNT 907 a 534 c 590 g 703 t ORIGIN 1 gggaagagaa ggaccgagac agaagcaaca acggaactgt cagtgcggag tagggctaaa 61 ctcagttcca ttgttaagca aggaaaaaca aacaatacat tgaatttgac aacccactga 121 agttgcagat aatgaggact taccattgta taccattatt catctggacc tatatgttcc 181 atacagttga caccatccta ttacaagaaa aacctaacag ttatttatca agcaaaaaga 241 tagtgggtct gacaaaagat gacggtaaaa tgctacgtcg caccaagcgt ggctggatgt 301 ggaatcagtt cttcttattg gaagagtaca caggtactga cacacaatat gtaggcaagc 361 ttcacactga ccaagataaa ggagatggaa atttaaaata catactaaca ggagatgggg 421 ctggcagtct atttgttata gatgaaaata caggagacat tcatgctgca aagaaactag 481 acagagaaga aaaatctctg tacattcttc gtgccaaggc tatagacaga aaaactgggc 541 ggcaggtgga accggaatcg gaatttatca ttaaaataca tgatatcaat gacaatgagc 601 caaaatttac aaaagactta tacactgcca gtgttcctga aatgtctgga gtcggtacat 661 ctgttataca agtaactgca acagatgcag atgacgccaa ctatggaaat agtgccaaag 721 tggtctatag catattgcaa ggacagccat atttttcagt ggacccagaa tcaggcataa 781 taaaaactgc attaccagac atgagcagag aaaatagaga gcagtaccag gttgttatac 841 aggccaaaga catgggtggc cagatgggag gcctttctgg aaccaccaca gtgaacatca 901 cgctgacaga tgtcaacaac aaccctcctc gatttcccca gagtacgtat caatttaatt 961 ctcctgagtc tgtacctctt ggaactcatc ttggaaggat aaaagccaat gaccctgacg 1021 tgggggaaaa tgcagaaatg gagtatagca ttgctgaagg agatggtgca gacatgttcg 1081 atgtcatcac tgacaaggat acacaggaag ggattataac tgtcaaacag aatttagatt 1141 ttgaaaatca aatgctctat actttaagag tggatgcaag taacactcac cctgatccac 1201 gattcttaca cctgggacct ttcaaagata cagctgtggt caaaatatct gtggaagata 1261 tagatgagcc tcctgtgttc actaaagtct cttacttgat agaagtagat gaagatgtaa 1321 aggagggcag tatcattgga caggttacag catacgatcc agatgccagg aacaatttaa 1381 taaagtactc tgttgatcgg catactgata tggaccgtat ttttggtatt cactcagaaa 1441 atggttctat tttcactttg aaagcccttg accgggaatc atctccttgg cataacatca 1501 ctgttacagc cacagaaata aataacccaa aacaaagtag ccacatccct gtcttcatca 1561 gaattctaga tataaatgac catgctccgg aatttgccat gtattatgaa acatttgttt 1621 gtgaaaatgc aaaacctggg cagttgattc agactgtcag tgtcatggat aaggatgacc 1681 ctccccgagg tcacaaattc ttttttgaac cagtgccaga atttactctc aatccgaatt 1741 tcaccattgt agataataaa gataatacag caggaatcat gactcggaaa gatggctaca 1801 gtcgcaacaa aatgagcacc tacttattgc cgattttaat ctttgacaac gattatccaa 1861 ttcaaagcag cactggtaca ctcactatcc gtgtgtgtgc ctgcgataat caaggaaaca 1921 tgcaatcctg caccgcagaa gccctgatcc tttcagccgg cctgagcacg ggagctctcg 1981 ttgcgattct actctgtgtc ctcatactgc ttattttagt cgtgttgttt gctgcattga 2041 agaggcaaag aaaaaaggaa cctctgataa tttcaaaaga cgatgtccgg gacaacattg 2101 tgacctacaa cgatgaaggc ggcggggaag aagataccca agcttttgac attggcacat 2161 taaggaatcc agaggcaaga gaagacagta aacttagacg ggatgtaatg cctgaaacta 2221 tttttcagat aaggaggact gtgcctctgt gggaaaatat tgatgtacaa gattttatcc 2281 atcgaagatt aaaagaaaac gacgcagacc caagtgcacc tccatatgat tcgctggcaa 2341 cgtatgccta tgaagggaat gattccatag cagattcgct cagttctttg gaatctctca 2401 cagctgattg taaccaagat tatgattacc tcagtgactg ggggcctcgt ttcaaaaaac 2461 ttgccgatat gtatgggggt gatgatagtg accgagacta agaggattgt ttgacttaat 2521 caatattagt ggaagtactg tctatgttat tagattgagt ggcctgcatt ctcttcctgg 2581 gaggaaatct ttcaaaaatt gaagttacaa acaatacgta gatgttgtca agtagggatt 2641 tgcttaatca gtaagtcttt gtgaatgaat acgaatgata cagattttta aaaaagtaat 2701 aaccagttca ccctctttgc ctaacaatct cgga //