LOCUS BC113702 4100 bp mRNA linear HUM 29-JUN-2006
DEFINITION Homo sapiens FERM and PDZ domain containing 4, mRNA (cDNA clone
MGC:142262 IMAGE:8322754), complete cds.
ACCESSION BC113702
VERSION BC113702.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4100)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4100)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (21-FEB-2006) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein, NIMH
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 5 Row: o Column: 8.
FEATURES Location/Qualifiers
source 1..4100
/db_xref="H-InvDB:HIT000387155"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:142262 IMAGE:8322754"
/tissue_type="Brain, cerebral cortex and lung, PCR rescued
clones"
/clone_lib="NIH_MGC_324"
/note="Vector: pCR-XL-TOPO; Clone identification sequence
tag: AAAAGACT"
gene 1..4100
/gene="FRMPD4"
/gene_synonym="KIAA0316"
/db_xref="GeneID:9758"
/db_xref="HGNC:HGNC:29007"
CDS 92..4060
/gene="FRMPD4"
/gene_synonym="KIAA0316"
/codon_start=1
/product="FERM and PDZ domain containing 4"
/protein_id="AAI13703.1"
/db_xref="GeneID:9758"
/db_xref="HGNC:HGNC:29007"
/translation="MDVFSFVKIAKLSSHRTKSSGWPPPSGTWGLSQVPPYGWEMTAN
RDGRDYFINHMTQAIPFDDPRLESCQIIPPAPRKVEMRRDPVLGFGFVAGSEKPVVVR
SVTPGGPSEGKLIPGDQIVMINDEPVSAAPRERVIDLVRSCKESILLTVIQPYPSPKS
AFISAAKKARLKSNPVKVRFSEEVIINGQVSETVKDNSLLFMPNVLKVYLENGQTKSF
RFDCSTSIKDVILTLQEKLSIKGIEHFSLMLEQRTEGAGTKLLLLHEQETLTQVTQRP
SSHKMRCLFRISFVPKDPIDLLRRDPVAFEYLYVQSCNDVVQERFGPELKYDIALRLA
ALQMYIATVTTKQTQKISLKYIEKEWGLETFLPSAVLQSMKEKNIKKALSHLVKANQN
LVPPGKKLSALQAKVHYLKFLSDLRLYGGRVFKATLVQAEKRSEVTLLVGPRYGISHV
INTKTNLVALLADFSHVNRIEMFSEEESLVRVELHVLDVKPITLLMESSDAMNLACLT
AGYYRLLVDSRRSIFNMANKKNTATQETGPENKGKHNLLGPDWNCIPQMTTFIGEGEQ
EAQITYIDSKQKTVEITDSTMCPKEHRHLYIDNAYSSDGLNQQLSQPGEAPCEADYRS
LAQRSLLTLSGPETLKKAQESPRGAKVSFIFGDFALDDGISPPTLGYETLLDEGPEML
EKQRNLYIGSANDMKGLDLTPEAEGIQFVENSVYANIGDVKSFQAAEGIEEPLLHDIC
YAENTDDAEDEDEVSCEEDLVVGEMNQPAILNLSGSSDDIIDLTSLPPPEGDDNEDDF
LLRSLNMAIAAPPPGFRDSSDEEDSQSQAASFPEDKEKGSSLQNDEIPVSLIDAVPTS
AEGKCEKGLDNAVVSTLGALEALSVSEEQQTSDNSGVAILRAYSPESSSDSGNETNSS
EMTESSELATAQKQSENLSRMFLATHEGYHPLAEEQTEFPASKTPAGGLPPKSSHALA
ARPATDLPPKVVPSKQLLHSDHMEMEPETMETKSVTDYFSKLHMGSVAYSCTSKRKSK
LADGEGKAPPNGNTTGKKQQGTKTAEMEEEASGKFGTVSSRDSQHLSTFNLERTAFRK
DSQRWYVATEGGMAEKSGLEAATGKTFPRASGLGAREAEGKEEGAPDGETSDGSGLGQ
GDRFLTDVTCASSAKDLDNPEDADSSTCDHPSKLPEADESVARLCDYHLAKRMSSLQS
EGHFSLQSSQGSSVDAGCGTGSSGSACATPVESPLCPSLGKHLIPDASGKGVNYIPSE
ERAPGLPNHGATFKELHPQTEGMCPRMTVPALHTAINTEPLFGTLRDGCHRLPKIKET
TV"
BASE COUNT 1100 a 1044 c 1095 g 861 t
ORIGIN
1 gaggtcttgg ccatggggct gcggaggctg ctgttgctgg cgtgagaagg ggcgacggag
61 ttgtcgcgct cgggggtccc cagctgcctg catggatgtc ttcagctttg tgaagattgc
121 aaagctttcg agccacagga cgaagtcttc aggctggccg cctccctcgg gaacctgggg
181 cttgagccag gtgccgccct atggatggga gatgacggca aaccgagatg ggcgagacta
241 cttcatcaat cacatgacac aggcaatccc ttttgacgac cctcggttag agagctgcca
301 aatcatccct ccggctcctc ggaaggtgga gatgagaagg gaccccgtgc tgggatttgg
361 ttttgtggca ggcagtgaaa agccagtggt cgttcgctca gtaacaccag gtggcccctc
421 tgaaggcaag ctgatcccgg gagatcagat tgtaatgatt aatgatgaac cggtcagcgc
481 tgcacccaga gagcgggtca tcgatctggt cagaagctgc aaagaatcga tactcctcac
541 tgtcattcag ccttaccctt ctcccaaatc agcatttatt agtgctgcaa aaaaggcaag
601 attaaagtcc aatcctgtca aagtacgctt ctctgaggag gtcatcatca acggccaagt
661 gtcggaaact gttaaggaca actcacttct ttttatgcca aatgttttga aagtctatct
721 ggaaaatggg cagaccaaat catttcgttt tgactgcagc acttccatta aggatgtcat
781 cttaaccctt caagagaagc tctccatcaa aggcattgaa cacttctctc tcatgctgga
841 gcagaggaca gaaggggctg gaacgaagct gctcttgctt catgaacagg agactctaac
901 tcaggtgaca cagaggccca gctcccataa gatgagatgt cttttccgaa ttagcttcgt
961 cccaaaagat ccaattgacc ttttaaggag agatccagtt gctttcgagt atctctatgt
1021 tcagagttgt aacgatgtgg ttcaggagcg atttgggccg gagctgaaat atgacatagc
1081 cctgcggctg gccgcattac aaatgtacat tgcaaccgtt accaccaagc aaacgcagaa
1141 aatctccctc aaatacatcg aaaaagaatg gggattagag acttttcttc cctctgctgt
1201 gctgcaaagc atgaaagaga agaacataaa gaaagcactt tcacaccttg tcaaagcaaa
1261 tcaaaacttg gtaccaccgg gtaaaaagct ctctgcacta caagccaagg tccattatct
1321 caagttcctc agtgacctac gattgtatgg gggccgtgtg ttcaaggcaa cattagtgca
1381 ggcagaaaag cgctcggaag tgactctcct ggttgggccc cggtatggca taagccatgt
1441 catcaacacc aaaaccaatc tggtggctct tttagccgac tttagccacg tgaacaggat
1501 cgaaatgttt tccgaggagg agagcttggt gcgggtagaa ctccacgtgc tagatgtgaa
1561 gcctatcacg cttctgatgg aatcctcaga tgccatgaac ctggcctgct tgacggctgg
1621 atactaccgg ctgcttgttg attccaggag gtcgatattt aacatggcca acaagaaaaa
1681 cacagcgacc caggaaacag gacctgaaaa caaggggaag cataacctcc ttggcccaga
1741 ttggaactgt ataccccaaa tgaccacctt tattggcgaa ggggaacaag aagcccagat
1801 aacatacata gattcaaagc agaagacggt ggagatcaca gacagcacca tgtgtccaaa
1861 agagcaccgg cacttgtaca tagacaatgc ctatagttca gatggactta accagcagct
1921 gagccagccc ggggaggccc cctgtgaggc agactacaga agtctagctc agcggtccct
1981 attgaccctc tcaggaccag aaactctgaa gaaagcacag gaatctccga gaggagctaa
2041 agtgtccttt atttttggag acttcgcctt ggatgatggt attagtcccc caacccttgg
2101 ctatgaaacg ctactagatg agggtcctga aatgctggag aagcagagaa atctctacat
2161 tggcagtgcc aatgacatga agggcctgga tctcactcca gaggcagagg gcatccagtt
2221 tgtggaaaat tctgtttatg caaacatagg cgatgtgaag agcttccagg ccgcggaggg
2281 gatcgaggaa cccctcttgc atgacatctg ttatgcagaa aacactgatg acgcggagga
2341 cgaggacgag gtgagctgcg aggaggacct cgtggtgggg gagatgaacc agccggccat
2401 cctcaacctg tctgggtcaa gcgatgacat cattgacctc acatccctgc cccctccaga
2461 aggtgatgac aatgaggatg acttcctgtt gcgttccttg aacatggcca ttgccgcacc
2521 cccacctggc tttagagaca gttcagatga agaggactct cagagccagg cagcttcctt
2581 ccccgaggac aaggagaaag gcagcagcct gcaaaatgat gagatccccg tgtccctcat
2641 tgacgctgtg cccaccagcg ccgaaggcaa gtgtgagaag ggactggata atgccgtcgt
2701 ctccacgctg ggagctctag aggctctatc cgtgtcagaa gaacagcaga ccagtgacaa
2761 ttcaggtgta gccatcttgc gggcttatag tcctgagtct tcgtcagact cgggcaatga
2821 aactaactct tctgaaatga ctgagagttc tgaactggcc acagcacaaa aacagtcaga
2881 aaacctctcc cgcatgttct tggccactca cgaaggctac cacccccttg cagaagagca
2941 gaccgagttc ccggcctcca agacccccgc tgggggcttg cctccaaagt cctcgcacgc
3001 cctggctgct aggccagcaa ccgacctccc gcccaaagtt gtgccttcca agcagttact
3061 tcactcagac cacatggaga tggagcctga aactatggag actaagtcgg tcactgacta
3121 ttttagcaaa ctgcacatgg ggtcggtggc atactcctgc actagcaaaa ggaaaagcaa
3181 gctggccgat ggtgagggga aggcaccccc taatgggaac acaacaggaa aaaaacagca
3241 ggggaccaaa acggcagaga tggaggagga ggccagtggt aaatttggta ctgtgtcttc
3301 acgagacagt caacacctga gcacttttaa tctggagaga actgcctttc gcaaggacag
3361 tcaaagatgg tatgtggcca ctgaaggtgg gatggctgaa aaaagtggat tagaagcagc
3421 aacagggaaa acctttccaa gagcttctgg tcttggggca agggaggccg aagggaagga
3481 agaaggagct cctgatggag aaaccagtga tggctcagga cttggtcaag gggaccgctt
3541 cttaactgac gtgacctgtg catcttcagc caaagactta gataacccag aggacgctga
3601 ctcgtccacc tgcgaccatc cttccaagct tcctgaggct gatgagagtg tggcccgcct
3661 ttgtgactac cacttggcca agcggatgtc atcactgcaa agcgagggcc atttttctct
3721 gcagagctcc caaggctctt cagtggatgc aggctgtggc acaggcagca gtggcagtgc
3781 ctgtgccaca cccgtggagt cgccgctctg cccctccctg gggaagcact tgattcctga
3841 cgcttctggg aaaggcgtga attacattcc ttcagaggag agagcccctg ggcttcccaa
3901 ccacggagcc acctttaagg aactgcaccc acagacagaa gggatgtgtc cacggatgac
3961 agtgcctgct ctgcacacag ccattaacac cgaacccctg tttggcacat tgagagatgg
4021 atgccatcgg ctccccaaga ttaaggaaac cacagtgtag ctttgacaga gcctgggaag
4081 gagagacgag gaggcatgcc
//