LOCUS BC113689 2875 bp mRNA linear HUM 18-MAR-2009
DEFINITION Homo sapiens chloride channel accessory 4, mRNA (cDNA clone
MGC:142249 IMAGE:8322741), complete cds.
ACCESSION BC113689
VERSION BC113689.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2875)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2875)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (21-FEB-2006) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein, NIMH
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 5 Row: n Column: 19.
FEATURES Location/Qualifiers
source 1..2875
/db_xref="H-InvDB:HIT000387142"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:142249 IMAGE:8322741"
/tissue_type="Pooled, cerebellum, kidney, placenta,
testis, lung, colon, liver, heart, thyroid, bladder,
uterus, PCR rescued clones"
/clone_lib="NIH_MGC_361"
/lab_host="DH10B"
/note="Vector: pCR4-TOPO; Clone identification sequence
tag: CCCAGACT"
gene 1..2875
/gene="CLCA4"
/gene_synonym="CaCC"
/gene_synonym="CaCC2"
/db_xref="GeneID:22802"
/db_xref="HGNC:HGNC:2018"
CDS 39..2792
/gene="CLCA4"
/gene_synonym="CaCC"
/gene_synonym="CaCC2"
/codon_start=1
/product="chloride channel accessory 4"
/protein_id="AAI13690.1"
/db_xref="GeneID:22802"
/db_xref="HGNC:HGNC:2018"
/translation="MGLFRGFVFLLVLCLLHQSNTSFIKLNNNGFEDIVIVIDPSVPE
DEKIIEQIEDMVTTASTYLFEATEKRFFFKNVSILIPENWKENPQYKRPKHENHKHAD
VIVAPPTLPGRDEPYTKQFTECGEKGEYIHFTPDLLLGKKQNEYGPPGKLFVHEWAHL
RWGVFDEYNEDQPFYRAKSKKIEATRCSAGISGRNRVYKCQGGSCLSRACRIDSTTKL
YGKDCQFFPDKVQTEKASIMFMQSIDSVVEFCNEKTHNQEAPSLQNIKCNFRSTWEVI
SNSEDFKNTIPMVTPPPPPVFSLLKISQRIVCLVLDKSGSMGGKDRLNRMNQAAKHFL
LQTVENGSWVGMVHFDSTATIVNKLIQIKSSDERNTLMAGLPTYPLGGTSICSGIKYA
FQVIGELHSQLDGSEVLLLTDGEDNTASSCIDEVKQSGAIVHFIALGRAADEAVIEMS
KITGGSHFYVSDEAQNNGLIDAFGALTSGNTDLSQKSLQLESKGLTLNSNAWMNDTVI
IDSTVGKDTFFLITWNSLPPSISLWDPSGTIMENFTVDATSKMAYLSIPGTAKVGTWA
YNLQAKANPETLTITVTSRAANSSVPPITVNAKMNKDVNSFPSPMIVYAEILQGYVPV
LGANVTAFIESQNGHTEVLELLDNGAGADSFKNDGVYSRYFTAYTENGRYSLKVRAHG
GANTARLKLRPPLNRAAYIPGWVVNGEIEANPPRPEIDEDTQTTLEDFSRTASGGAFV
VSQVPSLPLPDQYPPSQITDLDATVHEDKIILTWTAPGDNFDVGKVQRYIIRISASIL
DLRDSFDDALQLNTTDLSPKEANSKESFAFKPENISEENATHIFIAIKSIDKSNLTSK
VSNIAQVTLFIPQANPDDIDPTPTPTPTPDKSHNSGVNISTLVLSVIGSVVIVNFILS
TTI"
BASE COUNT 957 a 560 c 588 g 770 t
ORIGIN
1 caaccaacat ttgagccagg aataactaga gaggaacaat ggggttattc agaggttttg
61 ttttcctctt agttctgtgc ctgctgcacc agtcaaatac ttccttcatt aagctgaata
121 ataatggctt tgaagatatt gtcattgtta tagatcctag tgtgccagaa gatgaaaaaa
181 taattgaaca aatagaggat atggtgacta cagcttctac gtacctgttt gaagccacag
241 aaaaaagatt ttttttcaaa aatgtatcta tattaattcc tgagaattgg aaggaaaatc
301 ctcagtacaa aaggccaaaa catgaaaacc ataaacatgc tgatgttata gttgcaccac
361 ctacactccc aggtagagat gaaccataca ccaagcagtt cacagaatgt ggagagaaag
421 gcgaatacat tcacttcacc cctgaccttc tacttggaaa aaaacaaaat gaatatggac
481 caccaggcaa actgtttgtc catgagtggg ctcacctccg gtggggagtg tttgatgagt
541 acaatgaaga tcagcctttc taccgtgcta agtcaaaaaa aatcgaagca acaaggtgtt
601 ccgcaggtat ctctggtaga aatagagttt ataagtgtca aggaggcagc tgtcttagta
661 gagcatgcag aattgattct acaacaaaac tgtatggaaa agattgtcaa ttctttcctg
721 ataaagtaca aacagaaaaa gcatccataa tgtttatgca aagtattgat tctgttgttg
781 aattttgtaa cgaaaaaacc cataatcaag aagctccaag cctacaaaac ataaagtgca
841 attttagaag tacatgggag gtgattagca attctgagga ttttaaaaac accataccca
901 tggtgacacc acctcctcca cctgtcttct cattgctgaa gatcagtcaa agaattgtgt
961 gcttagttct tgataagtct ggaagcatgg ggggtaagga ccgcctaaat cgaatgaatc
1021 aagcagcaaa acatttcctg ctgcagactg ttgaaaatgg atcctgggtg gggatggttc
1081 actttgatag tactgccact attgtaaata agctaatcca aataaaaagc agtgatgaaa
1141 gaaacacact catggcagga ttacctacat atcctctggg aggaacttcc atctgctctg
1201 gaattaaata tgcatttcag gtgattggag agctacattc ccaactcgat ggatccgaag
1261 tactgctgct gactgatggg gaggataaca ctgcaagttc ttgtattgat gaagtgaaac
1321 aaagtggggc cattgttcat tttattgctt tgggaagagc tgctgatgaa gcagtaatag
1381 agatgagcaa gataacagga ggaagtcatt tttatgtttc agatgaagct cagaacaatg
1441 gcctcattga tgcttttggg gctcttacat caggaaatac tgatctctcc cagaagtccc
1501 ttcagctcga aagtaaggga ttaacactga atagtaatgc ctggatgaac gacactgtca
1561 taattgatag tacagtggga aaggacacgt tctttctcat cacatggaac agtctgcctc
1621 ccagtatttc tctctgggat cccagtggaa caataatgga aaatttcaca gtggatgcaa
1681 cttccaaaat ggcctatctc agtattccag gaactgcaaa ggtgggcact tgggcataca
1741 atcttcaagc caaagcgaac ccagaaacat taactattac agtaacttct cgagcagcaa
1801 attcttctgt gcctccaatc acagtgaatg ctaaaatgaa taaggacgta aacagtttcc
1861 ccagcccaat gattgtttac gcagaaattc tacaaggata tgtacctgtt cttggagcca
1921 atgtgactgc tttcattgaa tcacagaatg gacatacaga agttttggaa cttttggata
1981 atggtgcagg cgctgattct ttcaagaatg atggagtcta ctccaggtat tttacagcat
2041 atacagaaaa tggcagatat agcttaaaag ttcgggctca tggaggagca aacactgcca
2101 ggctaaaatt acggcctcca ctgaatagag ccgcgtatat accaggctgg gtagtgaacg
2161 gggaaattga agcaaacccg ccaagacctg aaattgatga ggatactcag accaccttgg
2221 aggatttcag ccgaacagca tccggaggtg catttgtggt atcacaagtc ccaagccttc
2281 ccttgcctga ccaataccca ccaagtcaaa tcacagacct tgatgccaca gttcatgagg
2341 ataagattat tcttacatgg acagcaccag gagataattt tgatgttgga aaagttcaac
2401 gttatatcat aagaataagt gcaagtattc ttgatctaag agacagtttt gatgatgctc
2461 ttcaactaaa tactactgat ctgtcaccaa aggaggccaa ctccaaggaa agctttgcat
2521 ttaaaccaga aaatatctca gaagaaaatg caacccacat atttattgcc attaaaagta
2581 tagataaaag caatttgaca tcaaaagtat ccaacattgc acaagtaact ttgtttatcc
2641 ctcaagcaaa tcctgatgac attgatccta cacctactcc tactcctact cctgataaaa
2701 gtcataattc tggagttaat atttctacgc tggtattgtc tgtgattggg tctgttgtaa
2761 ttgttaactt tattttaagt accaccattt gaaccttaac gaagaaaaaa atcttcaagt
2821 agacctagaa gagagtttta aaaaacaaaa caatgtaagt aaaggatatt tctga
//