LOCUS BC113666 5865 bp mRNA linear HUM 29-JUN-2006
DEFINITION Homo sapiens rearranged L-myc fusion, mRNA (cDNA clone MGC:142226
IMAGE:8322718), complete cds.
ACCESSION BC113666
VERSION BC113666.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5865)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 5865)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (21-FEB-2006) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 5 Row: m Column: 20.
FEATURES Location/Qualifiers
source 1..5865
/db_xref="H-InvDB:HIT000387119"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:142226 IMAGE:8322718"
/tissue_type="Cerebellum, Lung, PCR rescued clones"
/clone_lib="NIH_MGC_348"
/lab_host="DH10B"
/note="Vector: pCR-XL-TOPO with reversed insert; Clone
identification sequence tag: CCGTGGGT"
gene 1..5865
/gene="RLF"
/gene_synonym="Zn-15L"
/gene_synonym="ZNF292L"
/db_xref="GeneID:6018"
/db_xref="HGNC:HGNC:10025"
/db_xref="MIM:180610"
CDS 32..5776
/gene="RLF"
/gene_synonym="Zn-15L"
/gene_synonym="ZNF292L"
/codon_start=1
/product="rearranged L-myc fusion"
/protein_id="AAI13667.1"
/db_xref="GeneID:6018"
/db_xref="HGNC:HGNC:10025"
/db_xref="MIM:180610"
/translation="MADGKGDAAAVAGAGAEAPAVAGAGDGVETESMVRGHRPVSPAP
GASGLRPCLWQLETELREQEVSEVSSLNYCRSFCQTLLQYASNKNASEHIVYLLEVYR
LAIQSFASARPYLTTECEDVLLVLGRLVLSCFELLLSVSESELPCEVWLPFLQSLQES
HDALLEFGNNNLQILVHVTKEGVWKNPVLLKILSQQPVETEEVNKLIAQEGPSFLQMR
IKHLLKSNCIPQATALSKLCAESKEISNVSSFQQAYITCLCSMLPNEDAIKEIAKVDC
KEVLDIICNLESEGQDNTAFVLCTTYLTQQLQTASVYCSWELTLFWSKLQRRIDPSLD
TFLERCRQFGVIAKTQQHLFCLIRVIQTEAQDAGLGVSILLCVRALQLRSSEDEEMKA
SVCKTIACLLPEDLEVRRACQLTEFLIEPSLDGFNMLEELYLQPDQKFDEENAPVPNS
LRCELLLALKAHWPFDPEFWDWKTLKRHCHQLLGQEASDSDDDLSGYEMSINDTDVLE
SFLSDYDEGKEDKQYRRRDLTDQHKEKRDKKPIGSSERYQRWLQYKFFCLLCKRECIE
ARILHHSKMHMEDGIYTCPVCIKKFKRKEMFVPHVMEHVKMPPSRRDRSKKKLLLKGS
QKGICPKSPSAIPEQNHSLNDQAKGESHEYVTFSKLEDCHLQDRDLYPCPGTDCSRVF
KQFKYLSVHLKAEHQNNDENAKHYLDMKNRREKCTYCRRHFMSAFHLREHEQVHCGPQ
PYMCVSIDCYARFGSVNELLNHKQKHDDLRYKCELNGCNIVFSDLGQLYHHEAQHFRD
ASYTCNFLGCKKFYYSKIEYQNHLSMHNVENSNGDIKKSVKLEESATGEKQDCINQPH
LLNQTDKSHLPEDLFCAESANSQIDTETAENLKENSDSNSSDQLSHSSSASMNEELID
TLDHSETMQDVLLSNEKVFGPSSLKEKCSSMAVCFDGTKFTCGFDGCGSTYKNARGMQ
KHLRKVHPYHFKPKKIKTKDLFPSLGNEHNQTTEKLDAEPKPCSDTNSDSPDEGLDHN
IHIKCKREHQGYSSESSICASKRPCTEDTMLELLLRLKHLSLKNSITHGSFSGSLQGY
PSSGAKSLQSVSSISDLNFQNQDENMPSQYLAQLAAKPFFCELQGCKYEFVTREALLM
HYLKKHNYSKEKVLQLTMFQHRYSPFQCHICQRSFTRKTHLRIHYKNKHQIGSDRATH
KLLDNEKCDHEGPCSVDRLKGDCSAELGGDPSSNSEKPHCHPKKDECSSETDLESSCE
ETESKTSDISSPIGSHREEQEGREGRGSRRTVAKGNLCYILNKYHKPFHCIHKTCNSS
FTNLKGLIRHYRTVHQYNKEQLCLEKDKARTKRELVKCKKIFACKYKECNKRFLCSKA
LAKHCSDSHNLDHIEEPKVLSEAGSAARFSCNQPQCPAVFYTFNKLKHHLMEQHNIEG
EIHSDYEIHCDLNGCGQIFTHRSNYSQHVYYRHKDYYDDLFRSQKVANERLLRSEKVC
QTADTQGHEHQTTRRSFNAKSKKCGLIKEKKAPISFKTRAEALHMCVEHSEHTQYPCM
VQGCLSVVKLESSIVRHYKRTHQMSSAYLEQQMENLVVCVKYGTKIKEEPPSEADPCI
KKEENRSCESERTEHSHSPGDSSAPIQNTDCCHSSERDGGQKGCIESSSVFDADTLLY
RGTLKCNHSSKTTSLEQCNIVQPPPPCKIENSIPNPNGTESGTYFTSFQLPLPRIKES
ETRQHSSGQENTVKNPTHVPKENFRKHSQPRSFDLKTYKPMGFESSFLKFIQESEEKE
DDFDDWEPSEHLTLSNSSQSSNDLTGNVVANNMVNDSEPEVDIPHSSSDSTIHENLTA
IPPLIVAETTTVPSLENLRVVLDKALTDCGELALKQLHYLRPVVVLERSKFSTPILDL
FPTKKTDELCVGSS"
BASE COUNT 1923 a 1128 c 1228 g 1586 t
ORIGIN
1 ggttgcctac gcgctggtgg gccgtgggaa gatggcggac ggaaagggag acgccgccgc
61 tgtcgccggg gctggggctg aggctccggc ggtagcggga gccggagatg gagtcgagac
121 tgagtccatg gttcggggtc atcgccccgt atctccagcg ccgggagcct cgggactgcg
181 gccgtgtctg tggcagctgg agacagagct gagggagcaa gaggtgtcgg aggtctcatc
241 tttgaactac tgccggagct tctgccagac cttattgcaa tatgcaagca acaagaatgc
301 atcagaacat attgtgtatc ttctggaggt atatcgactt gccatccaaa gctttgccag
361 tgcacgtcca tacttaacta ctgaatgtga agatgtcctc ttagtgcttg gcagattagt
421 actgagttgt ttcgaattac tgctttcagt gtctgaaagt gaactgccat gtgaagtctg
481 gctaccattc cttcagtctc tacaggagtc acatgatgca ttattggaat ttgggaataa
541 taacctacaa atattggttc atgttaccaa ggaaggggtg tggaaaaacc cagttcttct
601 taaaattctg tctcaacagc cagtagaaac ggaggaagtc aataaattga ttgcacaaga
661 aggaccttcc tttctgcaaa tgcgaataaa acatttgttg aaatctaact gcatccccca
721 ggctactgct ttatcaaaac tatgtgcaga atctaaagaa atttcaaatg tgtcatcttt
781 tcagcaagcc tatatcacat gtttatgttc tatgctccct aatgaagatg ctattaagga
841 gattgcaaag gtcgactgca aggaagtact agacatcatt tgtaatctgg aatctgaggg
901 gcaggataac acagcatttg ttctttgtac gacttacctt acccagcagc tccaaactgc
961 aagtgtatat tgttcttggg aactgactct tttttggagt aaactgcaaa gaagaattga
1021 cccttcttta gatacttttt tggagcgctg tcgtcagttt ggtgtcatag ctaaaacgca
1081 gcagcattta ttttgcctca ttagagttat acaaactgaa gcacaagatg ctggtcttgg
1141 ggtgtcaatt ttactgtgtg tcagagctct tcaactcaga tcaagtgaag atgaggaaat
1201 gaaggcatca gtttgtaaaa caattgcctg tcttttacca gaagatttag aagttagacg
1261 agcctgtcag cttacagaat tcttaattga acccagtttg gatggattta atatgttaga
1321 agaactatat ttgcaaccag atcaaaaatt tgatgaagaa aatgcaccgg ttccaaattc
1381 tcttcgatgt gagctcttac tagctttaaa agcccactgg ccttttgatc ctgagttttg
1441 ggactggaaa actttaaaac gacactgcca ccaactttta ggacaagaag cctcagattc
1501 tgatgatgat ttaagtggct atgaaatgtc cattaatgac acagatgttt tagagtcatt
1561 tctcagtgac tatgatgagg gtaaagaaga taaacaatat agaagaagag atttgacaga
1621 tcagcataag gagaaaagag acaaaaaacc tattggctct tctgaaagat atcagaggtg
1681 gcttcagtac aagtttttct gtttgttatg taagcgggaa tgtatagagg ctagaattct
1741 tcatcattct aagatgcata tggaagatgg aatttacacc tgtccagttt gtattaaaaa
1801 atttaagaga aaagaaatgt ttgttcctca tgtgatggag catgttaaaa tgccaccaag
1861 cagaagggac cgctctaaaa agaaattact gttaaaaggc tctcaaaagg gtatttgtcc
1921 taagagcccc tctgcaatcc cagagcaaaa ccattcattg aatgaccaag ccaaaggaga
1981 gtctcatgaa tatgtcacat tcagcaaatt agaagattgc cacctgcaag acagagattt
2041 gtatccatgt cccggtacag actgttcccg tgtgtttaag caatttaaat acttaagtgt
2101 gcatcttaaa gctgaacacc aaaataatga tgaaaatgcc aagcactact tggatatgaa
2161 aaatagaaga gagaagtgta cttactgtcg acgacatttt atgtctgctt ttcaccttcg
2221 agagcacgaa caagtgcatt gtgggcctca gccttatatg tgtgtatcta tagattgcta
2281 tgctaggttt ggatcagtaa atgaactact taaccataaa caaaagcatg acgatctgcg
2341 ttacaaatgt gaattaaatg gctgtaatat tgttttcagt gacttgggac agctttacca
2401 ccatgaagca caacacttta gggatgcatc ttacacatgc aacttccttg gctgtaaaaa
2461 gttctattac tccaaaattg aataccagaa tcacctctca atgcataatg ttgaaaattc
2521 aaatggagac ataaagaaat cagtgaaact tgaggagtct gcaacaggtg aaaagcaaga
2581 ttgtattaat cagccccatc tacttaacca aactgataaa tcacatttac ctgaagatct
2641 tttctgtgca gaatcagcta attctcaaat agatacagaa actgcagaaa acctgaaaga
2701 aaacagtgac agtaattcta gtgatcagtt aagtcatagc tcttcagctt caatgaatga
2761 agagctaatt gacacactag atcactctga aactatgcag gatgtattgt tatctaatga
2821 gaaagtcttt gggccctcca gtttaaaaga aaaatgttcc agtatggcag tttgttttga
2881 cgggactaag tttacctgtg gttttgatgg ctgtggttcc acatacaaaa atgcaagagg
2941 aatgcagaaa catttacgga aggttcatcc ataccatttc aagcccaaaa agataaagac
3001 gaaagatctg tttccctctt tgggtaatga acataatcag acaactgaaa agttggatgc
3061 agaacctaaa ccctgctcag atacaaacag tgactcccca gatgaaggtc tagatcacaa
3121 tattcacatt aaatgtaaac gagaacatca aggttattcc tcagaatcct ccatttgtgc
3181 ttctaaaagg ccctgtacag aggataccat gttggaactt ctgttacgct tgaaacattt
3241 aagcttgaaa aactcaataa cacatggatc tttctcaggg tcattgcagg ggtacccatc
3301 cagtggtgct aagtctcttc agtcagtttc atctatctca gaccttaatt ttcagaatca
3361 agatgaaaac atgccaagtc agtaccttgc acagttggcg gctaagccgt ttttctgtga
3421 gcttcaagga tgcaaatatg aatttgtgac cagagaggct ctgttaatgc attatcttaa
3481 aaagcataat tattcaaaag aaaaagtcct tcagttaacc atgttccaac atcggtattc
3541 cccatttcag tgtcatattt gccaaaggtc atttacaaga aaaacacacc ttaggattca
3601 ttataaaaat aaacatcaaa ttggcagtga cagagcaact cacaaactat tagataatga
3661 aaagtgtgat catgaaggcc catgttcagt agataggttg aaaggtgatt gttctgcaga
3721 acttggaggt gatcccagta gtaactctga gaaaccacac tgtcatccta aaaaggatga
3781 atgtagttct gaaacagatt tggaatcatc ttgtgaagaa acagaaagta aaacatctga
3841 catttcatca ccaataggca gccatagaga agaacaagaa ggaagagagg gcagaggtag
3901 caggcgaact gttgctaaag gaaatctgtg ttatattttg aataaatacc acaaaccatt
3961 ccattgtatt cataaaactt gcaactcctc attcaccaat ctaaaaggct taattcgcca
4021 ttacagaact gtacatcagt acaacaaaga acagttatgt ttggagaaag acaaagcaag
4081 aaccaaaagg gaacttgtca aatgtaaaaa gatatttgct tgcaaatata aggaatgtaa
4141 taaacgcttc ctgtgttcca aagctcttgc taagcactgt agtgattctc ataacctaga
4201 ccatattgaa gagcctaaag tactttccga agctggatct gcagcaaggt tttcttgtaa
4261 ccagcctcag tgccctgctg ttttttatac attcaacaag ttgaagcacc acttgatgga
4321 acagcataat attgaagggg aaatacattc agattatgaa attcattgtg atcttaatgg
4381 ctgtggccag attttcaccc atcgcagtaa ttactcacaa catgtatatt accgacataa
4441 agactattat gatgatttgt ttagaagcca gaaagtagca aatgagagac tactaaggag
4501 tgaaaaggta tgtcaaacag ctgatactca ggggcatgaa catcagacca ccaggagatc
4561 atttaatgct aagtctaaaa aatgtggctt aatcaaagaa aagaaagccc caataagttt
4621 taaaaccaga gctgaggccc tccatatgtg tgtggagcac tctgagcaca cacagtaccc
4681 ctgcatggtt caaggatgct tatctgtggt gaagttggag agcagcattg tgaggcatta
4741 caaacgcact catcagatga gtagtgccta tttagagcaa cagatggaga atcttgttgt
4801 ttgcgttaag tacggtacca aaattaagga ggaaccccct tctgaagcag atccctgtat
4861 aaagaaagaa gaaaatagaa gctgtgaatc agagcgcaca gaacacagcc attccccggg
4921 tgacagtagt gcacccatcc agaacactga ttgctgtcat tcaagtgaaa gggatggagg
4981 tcagaaaggg tgcatagaaa gcagctcagt atttgatgca gatactctgc tctacagggg
5041 aactttgaaa tgtaatcata gttccaaaac cacttcccta gaacagtgta atatagttca
5101 gcctcctcct ccttgtaaaa tagaaaattc catacctaat cccaatggga ctgaaagtgg
5161 gacttatttc acaagtttcc agctgccttt accaaggatc aaagaatcag aaactaggca
5221 gcatagttca gggcaagaaa acactgtaaa aaatccaacc catgtcccaa aagagaattt
5281 taggaaacat tcacagcccc ggtcatttga tttgaagact tacaaaccta tgggatttga
5341 atcttcattt ctgaaattta ttcaggaaag tgaagagaaa gaagatgatt ttgatgattg
5401 ggagccttca gagcacttaa cattaagtaa ttcttcacag tccagtaatg atttaacagg
5461 gaatgttgtg gcaaataata tggtgaatga cagtgaacct gaagttgaca tacctcattc
5521 ttccagtgac tctacaattc atgagaacct gactgcaatc ccacctttaa tagtagctga
5581 aacaacaaca gttccttcct tggaaaacct gagggttgta ttggacaaag cattaacaga
5641 ctgtggagag cttgccttaa aacagcttca ttatcttcgg ccagtggtgg ttcttgaaag
5701 atctaagttt tccacaccaa ttttagactt atttccaaca aaaaagacag atgagctttg
5761 tgtaggaagt tcataagtag caattttgtt ttagtaacag actggctcca acactgcaac
5821 atggggacat ttgccaactc gaacaaaggc tgagaagcag ccaca
//