LOCUS BC113607 2495 bp mRNA linear HUM 29-JUN-2006
DEFINITION Homo sapiens protocadherin gamma subfamily B, 4, mRNA (cDNA clone
MGC:142167 IMAGE:8322659), complete cds.
ACCESSION BC113607
VERSION BC113607.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2495)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2495)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (21-FEB-2006) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein, NIMH
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 5 Row: k Column: 9.
FEATURES Location/Qualifiers
source 1..2495
/db_xref="H-InvDB:HIT000387060"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:142167 IMAGE:8322659"
/tissue_type="Lung, PCR rescued clones"
/clone_lib="NIH_MGC_299"
/note="Vector: pCR4-TOPO with reversed insert; Clone
identification sequence tag: CCGGAACG"
gene 1..2495
/gene="PCDHGB4"
/gene_synonym="CDH20"
/gene_synonym="FIB2"
/gene_synonym="PCDH-GAMMA-B4"
/db_xref="GeneID:8641"
/db_xref="HGNC:HGNC:8711"
/db_xref="MIM:603058"
CDS 50..2461
/gene="PCDHGB4"
/gene_synonym="CDH20"
/gene_synonym="FIB2"
/gene_synonym="PCDH-GAMMA-B4"
/codon_start=1
/product="protocadherin gamma subfamily B, 4"
/protein_id="AAI13608.1"
/db_xref="GeneID:8641"
/db_xref="HGNC:HGNC:8711"
/db_xref="MIM:603058"
/translation="MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKG
SVVGNLATDLGFSVQELPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPAC
ALEFEAVAENPLNFYHVNVEIEDINDHTPKFTQNSFELQISESAQPGTRFILGSAHDA
DIGSNTLQNYQLSPSDHFSLINKEKSDGSKYPEMVLKTPLDREKQKSYHLTLTALDFG
APPLSSTAQIHVLVTDANDNAPVFSQDVYRVSLSENVYPGTTVLQVTATDQDEGVNAE
ITFSFSEASQITQFDLNSNTGEITVLNTLDFEEVKEYSIVLEARDGGGMIAQCTVEVE
VIDENDNAPEVIFQSLPNLIMEDAELGTHIALLKVRDKDSRHNGEVTCKLEGDVPFKI
LTSSRNTYKLVTDAVLDREQNPEYNITVTATDRGKPPLSSSSSITLHIGDVNDNAPVF
SQSSYIVHVAENNPPGASISQVRASDPDLGPNGQVSYCIMASDLEQRELSSYVSISAE
SGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVDDRNDNAPRVLYPALG
PDGSALFDMVPHAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGLFSLGLRTGEV
RTARALGDRDAVRQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLPDITDRPDPSDL
QAELQFYLVVALALISVLFLVAMILAIALRLRRSSSPASWSCFQPGLCVKSESVVPPN
YSEGTLPYSYNLCVAHTGKTEFNFLKCSEQLSSGQDILCGDSSGALFPLCNSSELTSH
QVSFL"
BASE COUNT 589 a 666 c 669 g 571 t
ORIGIN
1 gtaacccggc gtctccaggc tggtgagcaa gctgaggaga gcaagaggga tggggagcgg
61 cgccggggag ctgggccggg ctgagaggct gccagtgctc tttctcttcc tgctgtcttt
121 gttctgcccg gcgctctgtg agcagatccg ctacaggatt cccgaggaaa tgcccaaggg
181 ctccgtagtg gggaacctcg ccacggacct ggggttcagc gtccaggagt taccgactcg
241 aaaactgcgc gtcagttcgg agaagcctta cttcaccgtg agcgcagaga gcggggagtt
301 gcttgtgagc agcaggctag acagggagga gatatgcggg aagaagccag cttgtgctct
361 ggaatttgag gctgttgctg aaaatccact gaacttttat cacgtgaatg tggagatcga
421 ggacattaat gaccacacgc caaaattcac gcaaaattcc tttgagctgc aaataagtga
481 gtctgcacag cctggcacac gatttatatt aggatctgcc catgatgcgg atattggtag
541 caacacactg cagaattacc aactcagtcc cagtgatcat ttctcactga taaataaaga
601 gaaatcagat ggcagtaaat accctgagat ggtattgaag acacctttgg acagagaaaa
661 gcagaaatcc taccacttga ctttgactgc cttggacttt ggagctccac ccctaagcag
721 cactgcacag atacacgttc tagtgactga tgccaatgat aatgctccag tgttcagtca
781 agacgtatac agggtgagcc tttcagaaaa cgtgtacccg gggaccacgg tgctacaggt
841 gactgccacg gaccaggatg agggtgtcaa tgccgagatt actttctctt tcagtgaagc
901 tagccagatc acccaatttg acctgaactc taacaccggg gaaattactg ttttaaatac
961 attagatttt gaagaagtca aagaatattc catagttttg gaagcaaggg acggtggagg
1021 aatgattgcg caatgcacag tggaggtaga agtcatagat gaaaatgaca acgccccaga
1081 agtgatattc cagtctctac ccaacctaat tatggaggac gccgagctgg gaacacatat
1141 tgctttgctc aaagtccgtg acaaggattc cagacacaat ggagaagtga cttgtaaatt
1201 ggaaggtgat gttccattta aaatattaac ttcttcaaga aacacgtata aattagtgac
1261 agatgctgtt ctagaccgcg agcagaatcc agagtacaat ataaccgtta cggcaacaga
1321 tcggggcaag cctcccctct cctccagttc cagcatcacc ctgcacattg gtgatgtaaa
1381 tgacaacgct ccggttttct cacagtcttc ctatatagtc cacgtggccg agaacaaccc
1441 gcctggagcc tctatttcac aagtcagggc ttctgatccg gacttggggc ccaacggcca
1501 agtctcttac tgcatcatgg ccagtgacct ggagcagcgg gagctgtcat cctacgtgtc
1561 cataagcgcg gagagcgggg tggtgttcgc gcagcgcgcc ttcgaccacg agcagctgcg
1621 cgccttcgaa ctcacactgc aggcccgcga ccagggctcg ccagcgctca gcgcgaacgt
1681 gagcctgcgc gtgttagtgg acgaccgcaa cgacaatgcg ccacgggtgc tgtaccccgc
1741 gctgggtccc gacggctctg cgctcttcga tatggtgccg cacgctgcag agcctggcta
1801 cttggtgacc aaggtagtgg cggtggacgc agactcagga cacaacgcct ggctgtccta
1861 ccacgtgctg caggctagcg agcccgggct cttcagcctg gggctgcgca cgggcgaagt
1921 gcgcacagcg cgtgccttag gcgacaggga cgccgtccgc cagcgccttc tggtcgccgt
1981 gcgtgacggt ggacagccac cactctcggc cactgccacg ttgcacctgg tcttcgccga
2041 cagcttgcag gaggtgctgc cggatatcac tgaccgcccc gacccctctg acctccaggc
2101 tgagctgcag ttttacctag tggtggcctt ggccttgatc tcagtgctct tcctcgtggc
2161 catgattctg gccattgcct tgcgcctgcg acgctcctcc agccccgcct cctggagctg
2221 cttccagcct ggtctctgtg ttaaatccga atccgtggtt ccccccaact acagcgaggg
2281 gactttgcct tattcctaca atctatgtgt tgcacataca ggaaagacgg agtttaattt
2341 cctaaaatgt agtgagcagt tgagttcagg acaagacata ctttgcggtg attcatctgg
2401 ggccttattt ccactttgta attccagtga attgacttcc catcaggtga gtttccttta
2461 agtataattt aatgctcatt gcctacccat ttctc
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