LOCUS BC113491 1267 bp mRNA linear HUM 29-JUN-2006
DEFINITION Homo sapiens LIM homeobox transcription factor 1, beta, mRNA (cDNA
clone MGC:142051 IMAGE:8322543), complete cds.
ACCESSION BC113491
VERSION BC113491.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1267)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1267)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (21-FEB-2006) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein, NIMH
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 5 Row: f Column: 13.
FEATURES Location/Qualifiers
source 1..1267
/db_xref="H-InvDB:HIT000386944"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:142051 IMAGE:8322543"
/tissue_type="Pooled, cerebellum, kidney, placenta,
testis, lung, colon, liver, heart, thyroid, bladder,
uterus, PCR rescued clones"
/clone_lib="NIH_MGC_361"
/lab_host="DH10B"
/note="Vector: pCR4-TOPO; Clone identification sequence
tag: TATGTTCA"
gene 1..1267
/gene="LMX1B"
/gene_synonym="LMX1.2"
/db_xref="GeneID:4010"
/db_xref="HGNC:HGNC:6654"
/db_xref="MIM:602575"
CDS 51..1169
/gene="LMX1B"
/gene_synonym="LMX1.2"
/codon_start=1
/product="LIM homeobox transcription factor 1, beta"
/protein_id="AAI13492.1"
/db_xref="GeneID:4010"
/db_xref="HGNC:HGNC:6654"
/db_xref="MIM:602575"
/translation="MLDGIKMEEHALRPGPATLGVLLGSDCPHPAVCEGCQRPISDRF
LMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDYQQLFAAKCSGCMEKIAPT
EFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYEKEKDLLSSVSPDE
SDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVS
SKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLARRHQQQQEQQNSQRLGQEVLS
SRMEGMMASYTPLAPPQQQIVAMEQSPYGSSDPFQQGLTPPQMPGNDSIFHDIDSDTS
LTSLSDCFLGSSDVGSLQARVGNPIDRLYSMQSSYFAS"
BASE COUNT 253 a 418 c 408 g 188 t
ORIGIN
1 ccgagtcgct ggagaggtgc ttccctcgcg ggcagacgga ctgcgccaag atgttggacg
61 gcatcaagat ggaggagcac gccctgcgcc ccgggcccgc cactctgggg gtgctgctgg
121 gctccgactg cccgcatccc gccgtctgcg agggctgcca gcggcccatc tccgaccgct
181 tcctgatgcg agtcaacgag tcgtcctggc acgaggagtg tttgcagtgc gcggcgtgtc
241 agcaagccct caccaccagc tgctacttcc gggatcggaa actgtactgc aaacaagact
301 accaacagct cttcgcggcc aagtgcagcg gctgcatgga gaagatcgcc cccaccgagt
361 tcgtgatgcg ggcgctggag tgcgtgtacc acctgggctg cttctgctgc tgcgtgtgtg
421 aacggcagct acgcaagggc gacgaattcg tgctcaagga gggccagctg ctgtgcaagg
481 gtgactacga gaaggagaag gacctgctca gctccgtgag ccccgacgag tccgactccg
541 tgaagagcga ggatgaagat ggggacatga agccggccaa ggggcagggc agtcagagca
601 agggcagcgg ggatgacggg aaggacccgc ggaggcccaa gcgaccccgg accatcctca
661 ccacgcagca gcgaagagcc ttcaaggcct ccttcgaggt ctcgtcgaag ccttgccgaa
721 aggtccgaga gacactggca gctgagacgg gcctcagtgt gcgcgtggtc caggtctggt
781 ttcagaacca aagagcaaag atgaagaagc tggcgcggcg gcaccagcag cagcaggagc
841 agcagaactc ccagcggctg ggccaggagg tcctgtccag ccgcatggag ggcatgatgg
901 cttcctacac gccgctggcc ccaccacagc agcagatcgt ggccatggaa cagagcccct
961 acggcagcag cgaccccttc cagcagggcc tcacgccgcc ccaaatgcca gggaacgact
1021 ccatcttcca tgacatcgac agcgatacct ccttaaccag cctcagcgac tgcttcctcg
1081 gctcctcaga cgtgggctcc ctgcaggccc gcgtggggaa ccccatcgac cggctctact
1141 ccatgcagag ttcctacttc gcctcctgag agccagccag gcgcacggac gcttgggcag
1201 gggcctgggg gggactgcca gcctctgcgg ccagcctggc cacccccgcc ctgctctccg
1261 cacagac
//