LOCUS BC113464 2646 bp mRNA linear HUM 29-JUN-2006 DEFINITION Homo sapiens cadherin 17, LI cadherin (liver-intestine), mRNA (cDNA clone MGC:142024 IMAGE:8322516), complete cds. ACCESSION BC113464 VERSION BC113464.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2646) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2646) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (21-FEB-2006) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Mike Brownstein cDNA Library Preparation: British Columbia Cancer Research Center cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRCB Plate: 5 Row: e Column: 10. FEATURES Location/Qualifiers source 1..2646 /db_xref="H-InvDB:HIT000386917" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:142024 IMAGE:8322516" /tissue_type="Cerebellum, Uterus, Testis, PCR rescued clones" /clone_lib="NIH_MGC_337" /lab_host="DH10B" /note="Vector: pCR4-TOPO; Clone identification sequence tag: CTAGAGCA" gene 1..2646 /gene="CDH17" /gene_synonym="CDH16" /gene_synonym="HPT-1" /gene_synonym="HPT1" /db_xref="GeneID:1015" /db_xref="HGNC:HGNC:1756" /db_xref="MIM:603017" CDS 87..2585 /gene="CDH17" /gene_synonym="CDH16" /gene_synonym="HPT-1" /gene_synonym="HPT1" /codon_start=1 /product="cadherin 17, LI cadherin (liver-intestine)" /protein_id="AAI13465.1" /db_xref="GeneID:1015" /db_xref="HGNC:HGNC:1756" /db_xref="MIM:603017" /translation="MILQAHLHSLCLLMLYLATGYGQEGKFSGPLKPMTFSIYEGQEP SQIIFQFKANPPAVTFELTGETDNIFVIEREGLLYYNRALDRETRSTHNLQVAALDAN GIIVEGPVPITIEVKDINDNRPTFLQSKYEGSVRQNSRPGKPFLYVNATDLDDPATPN GQLYYQIVIQLPMINNVMYFQINNKTGAISLTREGSQELNPAKNPSYNLVISVKDMGG QSENSFSDTTSVDIIVTENIWKAPKPVEMVENSTDPHPIKITQVRWNDPGAQYSLVDK EKLPRFPFSIDQEGDIYVTQPLDREEKDAYVFYAVAKDEYGKPLSYPLEIHVKVKDIN DNPPTCPSPVTVFEVQENERLGNSIGTLTAHDRDEENTANSFLNYRIVEQTPKLPMDG LFLIQTYAGMLQLAKQSLKKQDTPQYNLTIEVSDKDFKTLCFVQINVIDINDQIPIFE KSDYGNLTLAEDTNIGSTILTIQATDADEPFTGSSKILYHIIKGDSEGRLGVDTDPHT NTGYVIIKKPLDFETAAVSNIVFKAENPEPLVFGVKYNASSFAKFTLIVTDVNEAPQF SQHVFQAKVSEDVAIGTKVGNVTAKDPEGLDISYSLRGDTRGWLKIDHVTGEIFSVAP LDREAGSPYRVQVVATEVGGSSLSSVSEFHLILMDVNDNPPRLAKDYTGLFFCHPLSA PGSLIFEATDDDQHLFRGPHFTFSLGSGSLQNDWEVSKINGTHARLSTRHTDFEEREY VVLIRINDGGRPPLEGIVSLPVTFCSCVEGSCFRPAGHQTGIPTVGMAVGILLTTLLV IGIILAVVFIRIKKDKGKDNVESAQASEVKPLRS" BASE COUNT 785 a 579 c 597 g 685 t ORIGIN 1 gcaagagtct cgaccactga atggaagaaa aggactttta accaccattt tgtgacttac 61 agaaaggaat ttgaataaag aaaactatga tacttcaggc ccatcttcac tccctgtgtc 121 ttcttatgct ttatttggca actggatatg gccaagaggg gaagtttagt ggacccctga 181 aacccatgac attttctatt tatgaaggcc aagaaccgag tcaaattata ttccagttta 241 aggccaatcc tcctgctgtg acttttgaac taactgggga gacagacaac atatttgtga 301 tagaacggga gggacttctg tattacaaca gagccttgga cagggaaaca agatctactc 361 acaatctcca ggttgcagcc ctggacgcta atggaattat agtggagggt ccagtcccta 421 tcaccataga agtgaaggac atcaacgaca atcgacccac gtttctccag tcaaagtacg 481 aaggctcagt aaggcagaac tctcgcccag gaaagccctt cttgtatgtc aatgccacag 541 acctggatga tccggccact cccaatggcc agctttatta ccagattgtc atccagcttc 601 ccatgatcaa caatgttatg tactttcaga tcaacaacaa aacgggagcc atctctctta 661 cccgagaggg atctcaggaa ttgaatcctg ctaagaatcc ttcctataat ctggtgatct 721 cagtgaagga catgggaggc cagagtgaga attccttcag tgataccaca tctgtggata 781 tcatagtgac agagaatatt tggaaagcac caaaacctgt ggagatggtg gaaaactcaa 841 ctgatcctca ccccatcaaa atcactcagg tgcggtggaa tgatcccggt gcacaatatt 901 ccttagttga caaagagaag ctgccaagat tcccattttc aattgaccag gaaggagata 961 tttacgtgac tcagcccttg gaccgagaag aaaaggatgc atatgttttt tatgcagttg 1021 caaaggatga gtacggaaaa ccactttcat atccgctgga aattcatgta aaagttaaag 1081 atattaatga taatccacct acatgtccgt caccagtaac cgtatttgag gtccaggaga 1141 atgaacgact gggtaacagt atcgggaccc ttactgcaca tgacagggat gaagaaaata 1201 ctgccaacag ttttctaaac tacaggattg tggagcaaac tcccaaactt cccatggatg 1261 gactcttcct aatccaaacc tatgctggaa tgttacagtt agctaaacag tccttgaaga 1321 agcaagatac tcctcagtac aacttaacga tagaggtgtc tgacaaagat ttcaagaccc 1381 tttgttttgt gcaaatcaac gttattgata tcaatgatca gatccccatc tttgaaaaat 1441 cagattatgg aaacctgact cttgctgaag acacaaacat tgggtccacc atcttaacca 1501 tccaggccac tgatgctgat gagccattta ctgggagttc taaaattctg tatcatatca 1561 taaagggaga cagtgaggga cgcctggggg ttgacacaga tccccatacc aacaccggat 1621 atgtcataat taaaaagcct cttgattttg aaacagcagc tgtttccaac attgtgttca 1681 aagcagaaaa tcctgagcct ctagtgtttg gtgtgaagta caatgcaagt tcttttgcca 1741 agttcacgct tattgtgaca gatgtgaatg aagcacctca attttcccaa cacgtattcc 1801 aagcgaaagt cagtgaggat gtagctatag gcactaaagt gggcaatgtg actgccaagg 1861 atccagaagg tctggacata agttattcac tgaggggaga cacaagaggt tggcttaaaa 1921 ttgaccacgt gactggtgag atctttagtg tggctccatt ggacagagaa gccggaagtc 1981 catatcgggt acaagtggtg gccacagaag taggggggtc ttccttgagc tctgtgtcag 2041 agttccacct gatccttatg gatgtgaatg acaaccctcc caggctagcc aaggactaca 2101 cgggcttgtt cttctgccat cccctcagtg cacctggaag tctcattttt gaggctactg 2161 atgatgatca gcacttattt cggggtcccc attttacatt ttccctcggc agtggaagct 2221 tacaaaacga ctgggaagtt tccaaaatca atggtactca tgcccgactg tctaccaggc 2281 acacagactt tgaggagagg gagtatgtcg tcttgatccg catcaatgat gggggtcggc 2341 cacccttgga aggcattgtt tctttaccag ttacattctg cagttgtgtg gaaggaagtt 2401 gtttccggcc agcaggtcac cagactggga tacccactgt gggcatggca gttggtatac 2461 tgctgaccac ccttctggtg attggtataa ttttagcagt tgtgtttatc cgcataaaga 2521 aggataaagg caaagataat gttgaaagtg ctcaagcatc tgaagtcaaa cctctgagaa 2581 gctgaatttg aaaaggaatg tttgaattta tatagcaagt gctatttcag caacaaccat 2641 ctcatc //