LOCUS BC113364 3569 bp mRNA linear HUM 29-JUN-2006 DEFINITION Homo sapiens collagen, type XIX, alpha 1, mRNA (cDNA clone MGC:141924 IMAGE:8322416), complete cds. ACCESSION BC113364 VERSION BC113364.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3569) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3569) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (21-FEB-2006) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Mike Brownstein, NIMH cDNA Library Preparation: British Columbia Cancer Research Center cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRCB Plate: 5 Row: a Column: 6. FEATURES Location/Qualifiers source 1..3569 /db_xref="H-InvDB:HIT000386817" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:141924 IMAGE:8322416" /tissue_type="Brain, cerebral cortex and lung, PCR rescued clones" /clone_lib="NIH_MGC_323" /note="Vector: pCR4-TOPO with reversed insert; Clone identification sequence tag: CTACATCA" gene 1..3569 /gene="COL19A1" /gene_synonym="COL9A1L" /gene_synonym="D6S228E" /db_xref="GeneID:1310" /db_xref="HGNC:HGNC:2196" /db_xref="MIM:120165" CDS 86..3514 /gene="COL19A1" /gene_synonym="COL9A1L" /gene_synonym="D6S228E" /codon_start=1 /product="collagen, type XIX, alpha 1" /protein_id="AAI13365.1" /db_xref="GeneID:1310" /db_xref="HGNC:HGNC:2196" /db_xref="MIM:120165" /translation="MRLTGPWKLWLWMSIFLLPASTSVTVRDKTEESCPILRIEGHQL TYDNINKLEVSGFDLGDSFSLRRAFCESDKTCFKLGSALLIRDTIKIFPKGLPEEYSV AAMFRVRRNAKKERWFLWQVLNQQNIPQISIVVDGGKKVVEFMFQATEGDVLNYIFRN RELRPLFDRQWHKLGISIQSQVISLYMDCNLIARRQTDEKDTVDFHGRTVIATRASDG KPVDIELHQLKIYCSANLIAQETCCEISDTKCPEQDGFGNIASSWVTAHASKMSSYLP AKQELKDQCQCIPNKGEAGLPGAPGSPGQKGHKGEPGENGLHGAPGFPGQKGEQGFEG SKGETGEKGEQGEKGDPALAGLNGENGLKGDLGPHGPPGPKGEKGDTGPPGPPALPGS LGIQGPQGPPGKEGQRGRRGKTGPPGKPGPPGPPGPPGIQGIHQTLGGYYNKDNKGND EHEAGGLKGDKGETGLPGFPGSVGPKGQKGEPGEPFTKGEKGDRGEPGVIGSQGVKGE PGDPGPPGLIGSPGLKGQQGSAGSMGPRGPPGDVGLPGEHGIPGKQGIKGEKGDPGGI IGPPGLPGPKGEAGPPGKSLPGEPGLDGNPGAPGPRGPKGERGLPGVHGSPGDIGPQG IGIPGRTGAQGPAGEPGIQGPRGLPGLPGTPGTPGNDGVPGRDGKPGLPGPPGDPIAL PLLGDIGALLKNFCGNCQASVPGLKSNKGEEGGAGEPGKYDSMARKGDIGPRGPPGIP GREGPKGSKGERGYPGIPGEKGDEGLQGIPGIPGAPGPTGPPGLMGRTGHPGPTGAKG EKGSDGPPGKPGPPGPPGIPFNERNGMSSLYKIKGGVNVPSYPGPPGPPGPKGDPGPV GEPGAMGLPGLEGFPGVKGDRGPAGPPGIAGMSGKPGAPGPPGVPGEPGERGPVGDIG FPGPEGPSGKPGINGKDGIPGAQGIMGKPGDRGPKGERGDQGIPGDRGSQGERGKPGL TGMKGAIGPMGPPGNKGSMGSPGHQGPPGSPGIPGIPADAVSFEEIKKYINQEVLRIF EERMAVFLSQLKLPAAMLAAQAYGRPGPPGKDGLPGPPGDPGPQGYRGQKGERGEPGI GLPGSPGLPGTSALGLPGSPGAPGPQGPPGPSGRCNPEDCLYPVSHAHQRTGGN" BASE COUNT 1019 a 811 c 1045 g 694 t ORIGIN 1 cagccctgtc cggactccac tgcgcctctg aggggctcaa atacgaattc aagatccgtg 61 gccgttcaca tggtttcaag gcacaatgag actcactggc ccttggaaac tttggctttg 121 gatgtcaata tttctgcttc ctgcttccac ttccgtgacc gttagggaca agacagaaga 181 gtcatgccct atcctgagaa tagagggaca tcagctgaca tatgacaaca taaacaaact 241 tgaagtttca ggttttgatc taggagacag cttttctcta agacgtgcat tttgtgaaag 301 tgataaaacc tgtttcaaat tgggaagtgc acttcttatt agagacacta ttaagatatt 361 tcccaaaggc cttcctgagg agtactcagt agctgccatg tttcgagtac gaagaaacgc 421 caaaaaggaa cggtggtttc tgtggcaggt tttaaaccag cagaatattc cacagatttc 481 tatagtagtt gatggtggaa agaaggtggt ggaatttatg tttcaagcca cagagggaga 541 tgtgttgaac tacattttta gaaatcgaga actccgtcct ttgtttgatc gtcagtggca 601 caaacttggc attagtatac aatcccaggt catttcactt tatatggatt gtaatttaat 661 tgcgaggagg cagactgatg aaaaggacac tgtggatttc catggacgga cagttattgc 721 tacgcgagct tcagatggca agcctgtgga tattgaactt caccaactta aaatctactg 781 cagtgcaaac ctcatagctc aagaaacatg ttgtgaaata tcagatacta agtgcccaga 841 gcaggatggc tttggaaata ttgcatcatc atgggtaact gctcatgcca gtaaaatgtc 901 ttcatatctg ccagcaaagc aggaacttaa agaccagtgc cagtgcattc caaacaaggg 961 agaagcagga ttaccaggag ctccgggttc acctgggcag aaagggcata aaggagagcc 1021 gggtgaaaat ggtttacatg gtgctccagg attccctggt caaaagggag agcaaggttt 1081 tgaaggcagc aaaggagaaa ctggtgaaaa gggtgaacaa ggagaaaaag gagatccagc 1141 tctggctggc cttaatggag aaaatggttt gaaaggtgac ttgggtcctc atggtccacc 1201 tggcccaaaa ggagaaaagg gagatacagg acccccagga ccaccagcct tacctggttc 1261 cctggggata caaggccccc aaggtccacc tggaaaagag ggtcagaggg gaagacgagg 1321 gaaaacagga cctcccggaa aaccaggacc cccaggacca cctggacctc ctggaataca 1381 aggaatacac caaactcttg gtggatatta taacaaggat aacaagggaa atgatgaaca 1441 tgaagctgga ggcctgaaag gagacaaggg tgaaactgga ctaccaggat ttccagggtc 1501 tgttggccct aaaggacaaa aaggagaacc tggagagcct tttacaaaag gagaaaaagg 1561 agatagagga gaacctgggg taataggatc acagggagta aagggtgaac ctggagatcc 1621 cggaccccct ggtttaatag gaagcccagg actaaagggt cagcaaggat ctgcaggctc 1681 catgggaccc agaggaccgc caggagatgt tggattgcca ggagaacatg gtatcccagg 1741 aaaacaaggc attaaaggag aaaagggaga tccgggtggg atcataggcc ctcccgggct 1801 tccaggtcca aaaggtgagg ctggtcctcc agggaaaagc ctgccagggg aaccaggatt 1861 agatggaaat cctggagcac ctggtccacg tgggccaaag ggtgaaagag gacttccagg 1921 tgttcacggt tccccagggg acataggccc acaagggata ggaattcctg gcagaacagg 1981 cgcccaagga ccagctggag agccaggtat tcagggtcct cgaggtctcc ctgggttgcc 2041 aggaactcca gggactccag ggaatgatgg agttccaggg agagatggaa agccaggcct 2101 gccaggcccc ccaggtgacc cgattgcact tcctctcttg ggagacatcg gtgctttgct 2161 caagaatttc tgtggcaact gccaagccag tgtcccaggg ctgaaaagca acaaaggaga 2221 agaaggaggt gctggtgagc ctggaaagta tgattccatg gcccggaagg gtgatatagg 2281 gccacggggt cctccaggaa tcccaggaag agagggacca aagggaagca aaggagagcg 2341 gggctaccct gggatacctg gggagaaagg cgatgagggt cttcaaggaa ttccaggcat 2401 tccaggtgct ccaggcccga ctggaccccc tggcttaatg ggaagaactg gacatcctgg 2461 tcccacagga gcaaaaggtg aaaagggcag cgacggaccc cctgggaaac ccggaccacc 2521 tggaccacct ggtattccat ttaatgaacg aaacggcatg agcagtttat ataaaattaa 2581 gggaggtgtg aatgttccca gttacccagg gccacccggt cctcctggcc caaaaggcga 2641 tcctggccca gtgggagagc ctggtgcaat ggggttgcca ggattagaag gatttccagg 2701 tgtaaaggga gatcgaggcc cagcaggtcc cccaggaata gcagggatgt cgggaaaacc 2761 tggtgcccca gggcctccag gagttccagg ggaaccgggt gagagaggac ctgttggaga 2821 tataggtttc cctggaccag aaggaccctc aggaaagcca ggaataaatg gaaaagatgg 2881 aataccaggt gctcagggca tcatgggtaa gcctggagac agaggcccca aaggagaacg 2941 tggtgatcag gggattccag gagacagagg ctcacaaggt gaacggggaa aaccaggcct 3001 tacaggcatg aagggggcca tcggtcctat gggtccacca ggaaacaagg gctccatggg 3061 atcccctggc caccaaggcc ctccaggctc tccaggcatc cctggcattc cggctgatgc 3121 agtttcattt gaagaaataa agaagtatat taatcaagag gtcctaagga tttttgaaga 3181 gaggatggct gtattcctat cccagctcaa gctgccagca gcaatgttgg ctgcccaagc 3241 ttatgggaga cctgggccac cagggaagga tgggttgcct gggccaccag gagaccctgg 3301 accccaaggc tacagaggac agaagggaga aagaggtgaa cctggaattg ggctgccagg 3361 gagtccaggt cttcctggga cttcagctct gggtttgcca ggctcaccag gtgccccagg 3421 cccacagggc cccccaggac ccagtggaag atgtaaccca gaagattgcc tctatcctgt 3481 gtctcatgcc catcagcgca caggtgggaa ttgaacacac ctgaagaaga cttggttcct 3541 ggtaacattt ccttgccact ggagctctc //