LOCUS BC113118 3343 bp mRNA linear HUM 21-JUL-2006
DEFINITION Homo sapiens contactin 6, mRNA (cDNA clone MGC:133256
IMAGE:40036214), complete cds.
ACCESSION BC113118
VERSION BC113118.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3343)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3343)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-FEB-2006) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 17 Row: k Column: 15.
FEATURES Location/Qualifiers
source 1..3343
/db_xref="H-InvDB:HIT000340539"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:133256 IMAGE:40036214"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_283"
/note="Vector: pCR-Blunt II-TOPO with reversed insert;
Clone identification sequence tag: AGTAGGG"
gene 1..3343
/gene="CNTN6"
/gene_synonym="NB3"
/db_xref="GeneID:27255"
/db_xref="HGNC:HGNC:2176"
/db_xref="MIM:607220"
CDS 181..3267
/gene="CNTN6"
/gene_synonym="NB3"
/codon_start=1
/product="contactin 6"
/protein_id="AAI13119.1"
/db_xref="GeneID:27255"
/db_xref="HGNC:HGNC:2176"
/db_xref="MIM:607220"
/translation="MRLLWKLVILLPLINSSAGDGLLSRPIFTQEPHDVIFPLDLSKS
EVILNCAANGYPSPHYRWKQNGTDIDFTMSYHYRLDGGSLAINSPHTDQDIGMYQCLA
TNLLGTILSRKAKLQFAYIEDFETKTRSTVSVREGQGVVLLCGPPPHFGDLSYAWTFN
DNPLYVQEDNRRFVSQETGNLYIAKVEPSDVGNYTCFITNKEAQRSVQGPPTPLVQRT
DGVMGEYEPKIEVRFPETIQAAKDSSVKLECFALGNPVPDISWRRLDGSPLPGKVKYS
KSQAILEIPNFQQEDEGFYECIASNLRGRNLAKGQLIFYAPPEWEQKIQNTHLSIYDN
LLWECKASGKPNPWYTWLKNGERLNPEERIQIENGTLIITMLNVSDSGVYQCAAENKY
QIIYANAELRVLASAPDFSKSPVKKKSFVQVGGDIVIGCKPNAFPRAAISWKRGTETL
RQSKRIFLLEDGSLKIYNITRSDAGSYTCIATNQFGTAKNTGSLIVKERTVITVPPSK
MDVTVGESIVLPCQVSHDPSIEVVFVWFFNGDVIDLKKGVAHFERIGGESVGDLMIRN
IQLHHSGKYLCTVQTTLESLSAVADIIVRGPPGPPEDVQVEDISSTTSQLSWRAGPDN
NSPIQIFTIQTRTPFSVGWQAVATVPEILNGKTYNATVVGLSPWVEYEFRVVAGNSIG
IGEPSEPSELLRTKASVPVVAPVNIHGGGGSRSELVITWESIPEELQNGEGFGYIIMF
RPVGSTTWSKEKVSSVESSRFVYRNESIIPLSPFEVKVGVYNNEGEGSLSTVTIVYSG
EDEPQLAPRGTSLQSFSASEMEVSWNAIAWNRNTGRVLGYEVLYWTDDSKESMIGKIR
VSGNVTTKNITGLKANTIYFASVRAYNTAGTGPSSPPVNVTTKKSPPSQPPANIAWKL
TNSKLCLNWEHVKTMENESEVLGYKILYRQNRQSKTHILETNNTSAELLVPFEEDYLI
EIRTVSDGGDGSSSEEIRIPKMSSLSSRGIQFLEPSTHFLSIVIVIFHCFAIQPLI"
BASE COUNT 1026 a 674 c 755 g 888 t
ORIGIN
1 catacggctt ggttctgcct ggacgcacag catgcctggc tgagagcttg aaacagagtt
61 ctgcagaaaa actgtaaaga tcccgagaca tttccctgac tcttgagata ctgactggaa
121 gatagactgt tttgttccac ctgattgtat gggagaaatt tttgacctta gaaagtggaa
181 atgaggttgc tatggaaact ggtaattctg ctgccactca taaactcttc tgcaggtgat
241 ggtcttttaa gccgtcctat ttttactcag gagccacatg atgtcatttt tcctttggat
301 ttatcaaaat ctgaggtcat cctgaattgt gctgctaacg gttacccttc gcctcattat
361 aggtggaagc aaaatggcac agacattgat tttactatga gttatcacta caggttggat
421 ggaggcagtc ttgcaatcaa tagcccccac acagatcaag atattggtat gtaccagtgc
481 ctggccacca atcttctggg gacaattctg agtcggaagg caaagctcca atttgcatat
541 attgaagact ttgaaactaa aacaagaagc acagtatctg tccgagaagg tcaaggtgtg
601 gtgcttctct gtggcccacc gccacatttt ggagatttat cttatgcatg gaccttcaat
661 gataacccct tatacgtcca agaggacaat aggcgatttg tatctcaaga gacgggaaac
721 ttgtacattg ccaaagtgga accatcagat gtgggcaact acacttgctt tataactaac
781 aaagaggccc agagaagtgt tcaaggtcca cccactccat tagtgcagcg cactgatggt
841 gtgatggggg aatatgaacc aaagattgaa gtgcgttttc ctgaaactat acaagctgca
901 aaggattcat ctgtaaaact ggaatgtttt gcccttggaa atccagtccc cgatattagt
961 tggagaaggt tggacgggag cccgttgcca gggaaagtca agtacagcaa atcccaagct
1021 atccttgaaa tcccgaactt ccaacaagaa gatgaaggct tttatgagtg cattgcaagc
1081 aaccttcgag gaagaaacct tgcaaagggt caactcattt tttatgctcc tccagaatgg
1141 gaacagaaaa tccaaaatac acacctctct atctatgaca acttgctctg ggaatgtaaa
1201 gctagtggaa agccaaaccc ttggtataca tggttaaaaa atggtgaacg actcaaccca
1261 gaggagagaa ttcaaataga aaatgggaca ctcatcataa cgatgctgaa tgtgtcagat
1321 tctggtgtgt accaatgtgc tgcagaaaac aaatatcaga taatttatgc aaatgctgaa
1381 ttgagagttt tagcctcagc tccagatttc tccaaaagtc cagttaaaaa aaagtctttt
1441 gttcaagttg gtggggatat tgttatcgga tgcaaaccaa atgcttttcc cagggcagct
1501 atctcttgga aaagaggaac ggagaccctt agacaaagca aaagaatatt tctcttggag
1561 gatggcagcc tcaagatata taatattacc aggtcagatg ctggatcata tacatgcata
1621 gccacaaatc agtttggcac tgcaaagaac actggcagcc tcattgtaaa agagagaact
1681 gtcattaccg tcccaccttc caaaatggat gttacagttg gcgagagtat agtgctacca
1741 tgccaggtgt cccatgaccc ctccattgaa gtggtatttg tatggttttt caatggagat
1801 gtcatagact taaaaaaagg agtggctcat tttgaaagga ttggaggaga atctgttggg
1861 gatttgatga taaggaatat tcagttacat cattcaggaa aatatctctg cacagtacaa
1921 acaaccctag aaagtttatc tgcagtagcc gatatcattg ttagaggtcc accaggtcct
1981 cctgaggatg tgcaagtgga agacatttcc agtactactt ctcaactaag ttggagagca
2041 ggcccagata ataacagtcc cattcaaata tttactattc agactcggac accattttct
2101 gtgggttggc aggctgttgc tacagttcca gaaattctca atggtaagac atacaatgca
2161 acagtggttg gtttgagtcc ttgggtggaa tatgaatttc gtgttgttgc cggcaacagc
2221 attgggattg gagaaccaag tgaaccatca gaattgttaa gaactaaagc atcagtccct
2281 gttgtggcac cagtaaacat ccatggaggt ggaggaagtc ggtctgaact cgtcattaca
2341 tgggagtcaa ttccagaaga actgcagaat ggggagggat ttggatatat catcatgttc
2401 cggccagtgg gctcgacaac ctggtccaag gagaaagtgt catctgtgga atcatcaagg
2461 tttgtctaca gaaatgaaag catcatccca ctgtctccct ttgaagtcaa agtgggtgtg
2521 tataataatg aaggagaagg atccctgagt actgtgacca ttgtctactc tggggaagat
2581 gaacctcaac tggccccaag gggaacttct ctccagagtt tttctgcttc tgaaatggag
2641 gtttcatgga atgctattgc ctggaataga aacactggaa gagtgctggg ctatgaggtc
2701 ttatactgga cagatgactc caaagaatcc atgataggta aaattagagt cagtggaaat
2761 gtcacaacca aaaacatcac ggggctgaaa gctaatacca tctactttgc ttccgtaaga
2821 gcttacaaca ctgctgggac agggccctca agccccccag tcaatgttac caccaaaaag
2881 tctcctccaa gccaaccacc agcaaacatt gcctggaagc tgacaaactc taaattatgc
2941 ttgaactggg agcatgtaaa aaccatggaa aatgagtctg aagttttggg gtacaagatt
3001 ctgtaccggc aaaacagaca gagtaaaact catattttgg aaacaaacaa tacatcagct
3061 gagcttctgg ttccatttga agaagactac ttaattgaaa taagaacagt cagtgatggt
3121 ggagatggaa gcagcagtga ggaaattagg attccaaaaa tgtcaagttt gagttccaga
3181 ggaattcaat tcttagaacc tagcacccat tttctttcca ttgtcattgt gatttttcac
3241 tgttttgcta ttcagccact tatctgatga ataaaaccat aaatctttga gagttttttg
3301 aaagcaaatc attctgtata tatgctctcc agcctctgac aca
//