LOCUS BC112943 2208 bp mRNA linear HUM 19-MAR-2007
DEFINITION Homo sapiens apolipoprotein L, 1, mRNA (cDNA clone MGC:131949
IMAGE:4512933), complete cds.
ACCESSION BC112943
VERSION BC112943.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2208)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2208)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-FEB-2006) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 255 Row: b Column: 13
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21735613.
FEATURES Location/Qualifiers
source 1..2208
/db_xref="H-InvDB:HIT000340516"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:131949 IMAGE:4512933"
/tissue_type="Bladder, transitional cell papilloma"
/clone_lib="NIH_MGC_93"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2208
/gene="APOL1"
/gene_synonym="APO-L"
/gene_synonym="APOL-I"
/db_xref="GeneID:8542"
/db_xref="HGNC:HGNC:618"
/db_xref="MIM:603743"
CDS 124..1320
/gene="APOL1"
/gene_synonym="APO-L"
/gene_synonym="APOL-I"
/codon_start=1
/product="apolipoprotein L, 1"
/protein_id="AAI12944.2"
/db_xref="GeneID:8542"
/db_xref="HGNC:HGNC:618"
/db_xref="MIM:603743"
/translation="MEGAALLRVSVLCIWMSALFLGVGVRAEEAGARVQQNVPSGTDT
GDPQSKPLGDWAAGTMDPESSIFIEDAIKYFKEKVSTQNLLLLLTDNEAWNGFVAAAE
LPRNEADELRKALDNLARQMIMKDKNWHDKGQQYRNWFLKEFPRLKSKLEDNIRRLRA
LADGVQKVHKGTTIANVVSGSLSISSGILTLVGMGLAPFTEGGSLVLLEPGMELGITA
ALTGITSSTIDYGKKWWTQAQAHDLVIKSLDKLKEVKEFLGENISNFLSLAGNTYQLT
RGIGKDIRALRRARANLQSVPHASASRPRVTEPISAESGEQVERVNEPSILEMSRGVK
LTDVAPVSFFLVLDVVYLVYESKHLHEGAKSETAEELKKVAQELEEKLNILNNNYKIL
QADQEL"
BASE COUNT 595 a 502 c 635 g 476 t
ORIGIN
1 ggaggacctg tctggttatt atacagacgc ataactggag gtgggatcca cacagctcag
61 aacagctgga tcttgctcag tctctgccag gggaagattc cttggaggag gccctgcagc
121 gacatggagg gagctgcttt gctgagagtc tctgtcctct gcatctggat gagtgcactt
181 ttccttggtg tgggagtgag ggcagaggaa gctggagcga gggtgcaaca aaacgttcca
241 agtgggacag atactggaga tcctcaaagt aagcccctcg gtgactgggc tgctggcacc
301 atggacccag agagcagtat ctttattgag gatgccatta agtatttcaa ggaaaaagtg
361 agcacacaga atctgctact cctgctgact gataatgagg cctggaacgg attcgtggct
421 gctgctgaac tgcccaggaa tgaggcagat gagctccgta aagctctgga caaccttgca
481 agacaaatga tcatgaaaga caaaaactgg cacgataaag gccagcagta cagaaactgg
541 tttctgaaag agtttcctcg gttgaaaagt aagcttgagg ataacataag aaggctccgt
601 gcccttgcag atggggttca gaaggtccac aaaggcacca ccatcgccaa tgtggtgtct
661 ggctctctca gcatttcctc tggcatcctg accctcgtcg gcatgggtct ggcacccttc
721 acagagggag gcagccttgt actcttggaa cctgggatgg agttgggaat cacagcagct
781 ttgaccggga ttaccagcag taccatagac tacggaaaga agtggtggac acaagcccaa
841 gcccacgacc tggtcatcaa aagccttgac aaattgaagg aggtgaagga gtttttgggt
901 gagaacatat ccaactttct ttccttagct ggcaatactt accaactcac acgaggcatt
961 gggaaggaca tccgtgccct cagacgagcc agagccaatc ttcagtcagt accgcatgcc
1021 tcagcctcac gcccccgggt cactgagcca atctcagctg aaagcggtga acaggtggag
1081 agagttaatg aacccagcat cctggaaatg agcagaggag tcaagctcac ggatgtggcc
1141 cctgtaagct tctttcttgt gctggatgta gtctacctcg tgtacgaatc aaagcactta
1201 catgaggggg caaagtcaga gacagctgag gagctgaaga aggtggctca ggagctggag
1261 gagaagctaa acattctcaa caataattat aagattctgc aggcggacca agaactgtga
1321 ccacagggca gggcagccac caggagagat atgcctggca ggggccagga caaaatgcaa
1381 actttttttt ttttctgaga cagagtcttg ctctgtcgcc aagttggagt gcaatggtgc
1441 gatctcagct cactgcaagc tctgcctccc gtgttcaagc gattctcctg ccttggcctc
1501 ccaagtagct gggactacag gcgcctacca ccatgcccag ctaatttttg tatttttaat
1561 agagatgggg tttcaccatg ttggccagga tggtctcgat ctcctgacct cttgatctgc
1621 ccaccttggc ctcccaaagt gctgggatta caggcgtgag ccatcgcttt tgacccaaat
1681 gcaaacattt tattaggggg ataaagaggg tgaggtaaag tttatggaac tgagtgttag
1741 ggactttggc atttccatag ctgagcacag caggggaggg gttaatgcag atggcagtgc
1801 agcaaggaga aggcaggaac attggagcct gcaataaggg aaaaatggga actggagagt
1861 gtggggaatg ggaagaagca gtttacttta gactaaagaa tatattgggg ggccgggtgt
1921 agtggctcat gcctgtaatc cgagcacttt gggaggccaa ggcgggcgga tcacgaggtc
1981 aggagatcaa gaccatcctg gctaacacag tgaaaccccg tctctactaa aaatacaaaa
2041 aattagccgg gcatggtggc gggcgcctgt agttccagct aactgggcgg ctgaggcagg
2101 agaatggcgt gaacctggga ggtggagctt gcagtgagcc gagatatcgc cactgcactc
2161 cagcctgggt gacagagcga gactccatct caaaaaaaaa aaaaaaaa
//