LOCUS BC112924 2618 bp mRNA linear HUM 26-JUL-2016
DEFINITION Homo sapiens hypothetical LOC388312, mRNA (cDNA clone
IMAGE:7470793), partial cds.
ACCESSION BC112924
VERSION BC112924.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2618)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2618)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-FEB-2006) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Allen Robins, Bresagen
cDNA Library Preparation: Express Genomics
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCF Plate: 1 Row: b Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 61966784.
FEATURES Location/Qualifiers
source 1..2618
/db_xref="H-InvDB:HIT000435117_05"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:7470793"
/tissue_type="Embryonic stem cells, isolated from the
Inner Cell Mass of Blastocyst stage embryos and
differentiated to an early endodermal cell type, BG01,
Markers:- GATA4+, MixL1+, Msx1+, HNF4alpha+, AFP-, Passage
number:- 40"
/clone_lib="NIH_MGC_258"
/lab_host="DH10B"
/note="Vector: pExpress1"
gene <1..2618
/gene="LOC388312"
/db_xref="GeneID:388312"
CDS <1..788
/gene="LOC388312"
/codon_start=3
/product="LOC388312 protein"
/protein_id="AAI12925.1"
/db_xref="GeneID:388312"
/translation="TSLWTPQAKLPTFQQLLHTQLLPPSGLFRPSSCFTRAFPGPTFV
SWQPSLARFLPVSQQPRQAEVLPHTGLSTSSLCLTVASPRPTPVPGRHLRAQNLLKSD
SLVPTAASWWPMKAQNLLKLTCPGPAPASCQRLQAQPLPHGGFSRPTSSSWLGLQAQL
LPHNSLFWPSSCPAHGGQCRPKTSSSQTLQAHLLLPGGINRPSFDLRTASAGPALASQ
GLFPGPALASWQLPQAKFLPACQQPQQAQLLPHSGPFRPNSRL"
BASE COUNT 430 a 1022 c 589 g 577 t
ORIGIN
1 ctacctcact gtggaccccc caagccaagc tcccaacctt tcagcagctt ctacacaccc
61 agctcctgcc acccagtggc ctctttaggc caagctcatg cttcacaagg gcctttccag
121 gcccaacttt tgtctcatgg caaccttccc tggccagatt cctgcctgtc tcccagcagc
181 ctagacaggc cgaggtcttg cctcacactg gcctctctac atccagctta tgcctcacgg
241 tggcctctcc acgcccaact cctgtcccag gacgtcatct ccgggcccaa aacttactca
301 agtcagactc tctagtccca actgctgcct catggtggcc tatgaaggcc caaaatctcc
361 tcaagttgac ctgtccaggc ccagctcctg cctcctgtca gcgtctacag gcccaacctc
421 tgcctcatgg gggcttctcc aggcccacct cttcctcttg gctgggtcta caggcacaac
481 tgctgcctca caacagcctt ttttggccca gttcctgtcc agctcatggc ggccaatgta
541 ggcccaaaac ttcctcaagt caaactctcc aggcccacct tctgcttccc ggtggcatca
601 acaggcccag ctttgacttg agaacagcct ctgcaggccc tgctcttgcc tcccaggggc
661 tttttccagg cccagctctt gcctcatggc agctgcccca ggccaaattt ctgcctgcct
721 gccagcagcc tcaacaggca cagctcctcc ctcacagtgg cccatttagg cccaactcac
781 gactgtgagg ccatttccag gcctagtgcc tgcctcgtgg ctgactcttg aagcccaaaa
841 cttcctcaaa tcaggctttt gcccaacttc tgtctactgt cggactctac aggtcagcct
901 ctgcctcaca gtggaccctc cagacccaga tggtgtctca ctgtggcatc ctcaggcgaa
961 gctcctgcct ttcggcagcc tctctaggcc cagctcctcc tgcctcccag tggcctcttt
1021 cggcccagcc cagctcatgc ctcccggcgg ccttcccaag ccccgctttt gactttcggt
1081 ggcctctgca ggcctcgaca aggcccagcc tcctgcctcc cgaaggcctg cacaggccca
1141 gcctctgcct cacagcggac tctccacgcc cagctagctg ttgcttcact gcggcctccc
1201 gagtccaaag ctcctgcctc tcggccgctt cggcaggccc agctcccgcc tgccagtggc
1261 ctcttcaggc ccatggggct cattcctgac aacggccttt ccaggcccag tttttccctt
1321 ccggcggcct ctccgggccc agaacctcct caagtcggcc tctccagacc cacttgcacc
1381 ctccgggcgt tctctccggg cccagctctt cttcctggtt gggtctccag gcccgattcc
1441 tgcctctcaa caacctcttt ggactcagtg cctacccatc tcctggcggc cttggtcggc
1501 ccacagcttc ctcaagccaa gctccccagg cccaggtcag gcctcacggt ggcctctcca
1561 ggatgagctc ctgccctccg atggcatctc caggccccaa atggtctccg gtcagtgggc
1621 tcctccacgc caaggttggg cctcccggcg accgccgcag gcccaagttg tcctgaagtc
1681 gggctctccc ggctgcatct ccaggccgga ctctggcccg actccaggtc ccaacaacgt
1741 ctttggactc agctcctgcc cagctcccag cggccctggt aggcccacaa cttccctaag
1801 ccaagctccc caggcccagc tcaggcctcg cggtggcctc tccaggctca gctcctggcc
1861 ctccgatgac atctgcaggc cccaaatggc ctccggtcgg tgggctcctc taggcccagc
1921 ttgggcctcc cggcggcctc cgcaggccca aatcgtcccg aagtcagtct ctccaggctt
1981 agctccagcc tcccggcggc ctctgcaggc ccaagtcgtc ctcaagtcgg cctggaagtg
2041 ggcctggaag agcagcaagt cggcctccct gggcccagct ccgtcctctc gacggcctct
2101 ccaggtgcaa aacttcctcg agtcagcctc tccaggccca gctcctcctg cctcccagtg
2161 gcctctttcg gcccagccca gctcatggct ctcggcggcc ttcccaggcc ccgcttttga
2221 cttttggcag cctcttcagg cgcagaactt gatctccagt cggcctttgc aggcccggcc
2281 tcctgcctct cgaaggcctg cacgggcccg gcctcggcct cggcctcaca gcagactctc
2341 cacgcccagc tagctctcgc ctcactgcgg cctccccagt ccaaagctcc tgcctttcgg
2401 ccacttcggc aggtccagct cctgcctgcc agtggcctct ttaggcccag ctcattcctc
2461 acgtcggcca ttccaggccc cgtttttccc ttccggcagc ctcttggcct ctaatttgtt
2521 tatcttttgt gtataaatcc caaaatattg aattttggaa tatttccacc attatgtaaa
2581 tattttgata ggtaaaaaaa aaaaaaaaaa aaaaaaaa
//