LOCUS BC112897 2971 bp mRNA linear HUM 20-JUL-2007 DEFINITION Homo sapiens C-type lectin domain family 16, member A, mRNA (cDNA clone MGC:111457 IMAGE:4419248), complete cds. ACCESSION BC112897 VERSION BC112897.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2971) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2971) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (02-FEB-2006) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Lou Staudt cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 217 Row: h Column: 4 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 54792781. FEATURES Location/Qualifiers source 1..2971 /db_xref="H-InvDB:HIT000340496" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:111457 IMAGE:4419248" /tissue_type="Lymph, lymphoma" /clone_lib="NIH_MGC_85" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..2971 /gene="CLEC16A" /gene_synonym="Gop-1" /db_xref="GeneID:23274" /db_xref="HGNC:HGNC:29013" CDS 138..2858 /gene="CLEC16A" /gene_synonym="Gop-1" /codon_start=1 /product="CLEC16A protein" /protein_id="AAI12898.1" /db_xref="GeneID:23274" /db_xref="HGNC:HGNC:29013" /translation="MFGRSRSWVGGGHGKTSRNIHSLDHLKYLYHVLTKNTTVTEQNR NLLVETIRSITEILIWGDQNDSSVFDFFLEKNMFVFFLNILRQKSGRYVCVQLLQTLN ILFENISHETSLYYLLSNNYVNSIIVHKFDFSDEEIMAYYISFLKTLSLKLNNHTVHF FYNEHTNDFALYTEAIKFFNHPESMVRIAVRTITLNVYKVDNQAMLHYIRDKTAVPYF SNLVWFIGSHVIELDDCVQTDEEHRNRGKLSDLVAEHLDHLHYLNDILIINCEFLNDV LTDHLLNRLFLPLYVYSLENQDKGGERPKISLPVSLYLLSQVFLIIHHAPLVNSLAEV ILNGDLSEMYAKTEQDIQRSSAKPSIRCFIKPTETLERSLEMNKHKGKRRVQKRPNYK NVGEEEDEEKGPTEDAQEDAEKAKEIEMVIMERSKLSELAASTSVQEQNTTDEEKSAA ATCSESTQWSRPFLDMVYHALDSPDDDYHALFVLCLLYAMSHNKGMDPEKLERIQLPV PNAAEKTTYNHPLAERLIRIMNNAAQPDGKIRLATLELSCLLLKQQVLMSAGCIMKDV HLACLEGAREESVHLVRHFYKGEDIFLDMFEDEYRSMTMKPMNVEYLMMDASILLPPT GTPLTGIDFVKRLPCGDVEKTRRAIRVFFMLRSLSLQLRGEPETQLPLTREEDLIKTD DVLDLNNSDLIACTVITKDGGMVQRFLAVDIYQMSLVEPDVSRLGWGVVKFAGLLQDM QVTGVEDDSRALNITIHKPASSPHSKPFPILQATFIFSDHIRCIIAKQRLAKGRIQAR RMKMQRIAALLDLPIQPTTEVLGFGLGSSTSTQHLPFRFYDQGRRGSSDPTVQRSVFA SVDKVPGEPAPRPAPQLVHHGGRSRSFSLWSLCELPFLSQKPRRLAAPAS" BASE COUNT 759 a 809 c 754 g 649 t ORIGIN 1 cggggaggaa ggcggctcgc ggttcctcca ccgcctccgc cgccgcatcc tccgcttgtg 61 ctaccgccgc gggcgctggg ccgctctgct ggtccggcat gagaccgtga gacgagagac 121 gggtcggggc cgccgacatg tttggccgct cgcggagctg ggtgggcggg ggccatggca 181 agacttcccg caacatccac tccttggacc acctcaagta tctgtaccac gttttgacca 241 aaaacaccac agtcacagaa cagaaccgga acctgctagt ggagaccatc cgttccatca 301 ctgagatcct gatctgggga gatcaaaatg acagctctgt atttgacttc ttcctggaga 361 agaatatgtt tgttttcttc ttgaacatct tgcggcaaaa gtcgggccgt tacgtgtgcg 421 ttcagctgct gcagaccttg aacatcctct ttgagaacat cagtcacgag acctcacttt 481 attatttgct ctcaaataac tacgtaaatt ctatcatcgt tcataaattt gacttttctg 541 atgaggagat tatggcctat tatatatcgt tcctgaaaac actttcgtta aaactcaaca 601 accacactgt ccatttcttt tataatgagc acaccaatga ctttgccctg tacacagaag 661 ccatcaagtt tttcaaccac cctgaaagca tggttagaat tgctgtaaga accataactt 721 tgaatgtcta taaagtggat aaccaggcca tgctgcacta catccgagat aaaactgctg 781 ttccttactt ctccaatttg gtctggttca ttgggagcca tgtgatcgaa ctcgatgact 841 gcgtgcagac tgatgaggag catcggaatc ggggtaaact gagtgatctg gtggcagagc 901 acctagacca cctgcactat ctcaatgaca tcctgatcat caactgtgag ttcctcaacg 961 atgtgctcac tgaccacctg ctcaacaggc tcttcctgcc cctctacgtg tactcactgg 1021 agaaccagga caagggagga gaacggccga aaattagcct gccggtgtct ctttatcttc 1081 tgtcacaggt cttcttaatt atacatcatg caccgctggt gaactcgtta gctgaagtca 1141 ttctgaatgg tgatctgtct gagatgtacg ctaagactga acaggatatt cagagaagtt 1201 ctgccaagcc cagcattcgg tgcttcatta aacccaccga gacactcgag cggtcccttg 1261 agatgaacaa gcacaagggc aagaggcggg tgcaaaagag acccaactac aaaaacgttg 1321 gggaagaaga agatgaggag aaagggccca ccgaggatgc ccaagaagac gccgagaagg 1381 ctaaagagat cgagatggtg atcatggagc gtagcaagct ctcagagctg gccgccagca 1441 cctccgtgca ggagcagaac accacggacg aggagaaaag cgccgccgcc acctgctctg 1501 agagcacgca atggagcaga cccttcctgg atatggtgta ccacgcgctg gacagcccgg 1561 atgatgatta ccatgccctg ttcgtgctct gcctcctcta tgccatgtct cataataaag 1621 gcatggatcc tgaaaaatta gagcgaatcc agctccccgt gccaaatgcg gccgagaaga 1681 ccacctacaa ccacccgcta gctgaaagac tcatcaggat catgaacaat gctgcccagc 1741 cagatgggaa gatccggctg gcgacgctgg agctgagctg cctgcttctg aagcagcaag 1801 tcctgatgag tgctggctgc atcatgaagg acgtgcacct ggcctgcctg gagggtgcga 1861 gagaagaaag tgttcacctt gtacgacatt tttataaggg agaagacatt tttttggaca 1921 tgtttgaaga tgagtatagg agcatgacaa tgaagcccat gaacgtggaa tatctcatga 1981 tggacgcctc catcctgctg cccccaacag gcacgccact gacgggcatt gacttcgtga 2041 agcggctgcc gtgtggcgat gtggagaaga cccggcgggc catccgggta ttcttcatgc 2101 tgcgttccct gtcactgcaa ttgcgagggg agcctgagac acagttgccg ctgactcggg 2161 aggaggacct gatcaagact gatgatgtcc tggatctgaa taacagcgac ttgattgcat 2221 gtacagtgat caccaaggat ggcggcatgg tccagcgatt cctggctgtg gatatttacc 2281 agatgagttt ggtggagcct gatgtgtcca ggcttggctg gggagtggtc aagtttgcag 2341 gcctattgca ggacatgcag gtgactggcg tggaggacga cagccgtgcc ctgaacatca 2401 ccatccacaa gcctgcgtcc agcccccatt ccaagccctt ccccatcctc caggccacct 2461 tcatcttctc agaccacatc cgctgcatca tcgccaagca gcgcctggcc aaaggccgca 2521 tccaggcaag gcgcatgaag atgcagagaa tagctgccct cctggacctc ccaatccagc 2581 ccaccactga agtcctgggg tttggactcg gctcctccac ctccactcag cacctgcctt 2641 tccgcttcta cgaccagggg cgccggggca gcagcgaccc cacagtgcag cgctccgtgt 2701 ttgcatcggt ggacaaggtg ccaggtgagc cagccccccg ccctgcgcca cagctcgttc 2761 atcatggtgg gcgttcaagg tctttctctc tgtggagcct gtgtgagctg cccttcctct 2821 ctcagaagcc ccgtcggctg gcagcaccag cttcttagaa tttgtcaaag cacagcgcaa 2881 gattaaacac agcccccaaa ataaattttg gctttccctt taaaaaaaaa aaaaaaaaaa 2941 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa a //