LOCUS BC112891 5954 bp mRNA linear HUM 18-MAR-2009
DEFINITION Homo sapiens small nuclear ribonucleoprotein 200kDa (U5), mRNA
(cDNA clone IMAGE:6042731), partial cds.
ACCESSION BC112891
VERSION BC112891.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5954)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 5954)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-FEB-2006) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 232 Row: b Column: 7.
FEATURES Location/Qualifiers
source 1..5954
/db_xref="H-InvDB:HIT000386675"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:6042731"
/tissue_type="Testis, embryonal carcinoma"
/clone_lib="NIH_MGC_92"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..5954
/gene="SNRNP200"
/gene_synonym="BRR2"
/gene_synonym="HELIC2"
/gene_synonym="U5-200KD"
/db_xref="GeneID:23020"
/db_xref="HGNC:HGNC:30859"
/db_xref="MIM:601664"
CDS <1..5664
/gene="SNRNP200"
/gene_synonym="BRR2"
/gene_synonym="HELIC2"
/gene_synonym="U5-200KD"
/codon_start=1
/product="SNRNP200 protein"
/protein_id="AAI12892.1"
/db_xref="GeneID:23020"
/db_xref="HGNC:HGNC:30859"
/db_xref="MIM:601664"
/translation="LMSSKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEIL
KTASDDRECENQLVLLLGFNTFDFIKVLRQHRMMILYCTLLASAQSEAEKERIMGKME
ADPELSKFLYQLHETEKEDLIREERSRRERVRQSRMDTDLETMDLDQGGEALAPRQVL
DLEDLVFTQGSHFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKL
PKYAQAGFEGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHI
NMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISAT
QIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEM
TQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIK
RFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSA
STEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATL
AWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSH
GELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLR
SPTLYGISHDDLKGDPLLDQRRLDLVHTAALMLDKNNLVKYDKKTGNFQVTELGRIAS
HYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSEFKNITVREEEKLELQKLLERVPIP
VKESIEEPSAKINVLLQAFISQLKLEGFALMADMVYVTQSAGRLMRAIFEIVLNRGWA
QLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVVKKIEKKNFPFERLYDLNHNEIGE
LIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKVELTITPDFQWDEKVHGSSEAF
WILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFEPLPPQYFIRVVSDRWLSCE
TQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFN
TVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYE
KFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVV
DEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATST
FNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQT
RLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPM
ERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVL
QMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTK
TIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSKC
ISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIP
IRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILS
KAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCT
DKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSGG
PVVVLVQLEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVK
LDFVAPATGAHNYTLYFMSDAYMGCDQEYKFSVDVKEAETDSDSD"
BASE COUNT 1487 a 1541 c 1571 g 1355 t
ORIGIN
1 ctgatgagtt ccaagaagaa ggatttgcac cctcgggata ttgatgcatt ttggctgcag
61 cggcagctca gtcgtttcta tgatgatgcc atcgtgtcgc agaagaaggc agatgaagta
121 ttggagattt tgaagacggc cagtgatgat cgggaatgtg aaaatcagct ggttctgctg
181 cttggtttca acacctttga tttcattaaa gtgttgcggc agcacaggat gatgatttta
241 tactgtacct tgctggccag tgcacaaagt gaagctgaaa aggaaaggat tatgggaaag
301 atggaagctg acccagagct atccaagttc ctctaccagc ttcatgaaac cgagaaggag
361 gatctgatcc gagaggaaag gtcccggaga gagcgagtgc gtcagtctcg aatggacaca
421 gatctggaaa ccatggatct cgaccagggt ggagaggcac tggctccacg gcaggttctg
481 gacttggagg acctggtttt tacccaaggg agccacttta tggccaataa acgctgtcag
541 cttcctgatg gatccttccg tcgccagcgt aagggctatg aagaggtgca tgtgcctgct
601 ctgaagccca agccctttgg ctcagaagaa caactgcttc cagtggaaaa gctgccaaag
661 tatgcccagg ctgggtttga gggcttcaaa acactgaatc ggatccagag taagctctac
721 cgtgctgccc ttgagacgga tgagaatctg ctgctgtgtg ctcctactgg tgctgggaag
781 accaacgtgg ccctgatgtg catgctccga gagattggga aacacataaa catggacggc
841 accatcaatg tggatgactt caagattatc tacattgccc ccatgcgctc cttggtgcag
901 gagatggtgg gcagctttgg aaagcgcctg gccacttatg gcatcactgt tgctgaactg
961 actggggacc accagctgtg caaagaagag atcagtgcca ctcagatcat cgtctgcacc
1021 cccgagaagt gggacatcat cacccgcaag ggtggtgagc gcacctacac ccagctggtg
1081 cggctcatca ttctggatga gattcatctt ctccacgatg acagaggtcc tgtcttagaa
1141 gctttagtgg ccagggccat ccgaaacatt gagatgaccc aagaggatgt ccgactcatt
1201 ggtctcagtg ccaccctacc caactatgaa gatgtagcca cctttctacg tgttgaccct
1261 gccaagggtc tcttttactt tgacaacagc ttccgtccag tgcctctgga acagacatat
1321 gtgggtatca cagagaaaaa agctatcaag cgtttccaga tcatgaatga aatcgtctat
1381 gaaaaaatca tggaacatgc tggaaaaaat caggtgctgg tgtttgtcca ctcccggaag
1441 gagactggaa agacagccag ggccatccgg gacatgtgcc tagaaaagga cactctgggt
1501 ctgtttctga gggagggctc agcctccaca gaagtcctgc gaacagaagc tgagcagtgc
1561 aagaacctag agctgaagga tcttctgcct tatggctttg ctattcatca cgcaggcatg
1621 accagggttg accgaacact cgtggaggat ctttttgctg ataaacatat tcaggtttta
1681 gtttccacag caactctagc ttggggtgtg aatctccctg cacatacagt catcatcaaa
1741 ggcacccagg tgtacagtcc agagaagggg cgttggacag aactgggagc actggacatt
1801 ctgcagatgc tgggacgtgc cggaagaccc cagtatgaca ccaagggtga aggcatactc
1861 atcacatctc atggggagct acagtactac ctgtccctcc tcaatcaaca acttcctatt
1921 gaaagccaga tggtttcaaa gcttcctgac atgctcaatg cagaaatcgt gctaggaaat
1981 gtccagaatg ccaaggatgc ggtgaactgg ctgggctatg cctacctcta tatccgaatg
2041 ctgcgatccc caaccctcta tggcatctct catgatgacc tcaagggaga tcccctgctg
2101 gaccagcgcc gactagatct ggttcataca gctgccctga tgctggacaa gaacaatctg
2161 gtcaagtacg acaagaagac gggcaacttc caggtgacag aactgggccg tatagccagc
2221 cactactaca tcaccaatga tacagtgcag acttacaacc agctgctgaa gcccaccctg
2281 agtgagattg agcttttcag ggtcttctca ttgtcctctg agttcaagaa catcacagtg
2341 agagaggagg agaagctgga gctgcagaag ttgctggaga gggtgcctat ccctgtaaag
2401 gagagcattg aggaacccag tgctaagatc aacgttcttc tgcaagcctt catctcacag
2461 ctgaaattgg agggctttgc actgatggct gacatggtgt atgtcacaca gtcggctggc
2521 cggttgatgc gagcgatatt tgaaattgtc ctgaaccgag gttgggcaca gcttacagac
2581 aagaccctga acctctgcaa gatgatcgac aaacgcatgt ggcagtccat gtgtcctctg
2641 cgccagttcc ggaaactccc tgaggaagta gtgaagaaga ttgagaagaa gaatttcccc
2701 tttgagcgtc tgtacgacct gaatcataat gagattgggg agcttatccg catgccaaag
2761 atggggaaga ccatccacaa atatgtccat ctgtttccca agctggagtt gtcagtgcac
2821 ctgcagccta tcacacgctc caccctgaag gtggagctga ccatcacgcc agacttccag
2881 tgggatgaaa aggtgcatgg ttcatccgag gctttttgga ttctggtgga ggatgtggac
2941 agcgaggtga ttctgcacca tgagtatttt ctcctcaagg ccaagtacgc ccaggacgag
3001 cacctcatta cattcttcgt gcctgtcttt gaaccgctgc cccctcagta cttcatccga
3061 gtggtgtctg accgctggct ctcttgtgag acccagctgc ctgtctcctt ccggcacctg
3121 atcttgccgg agaagtaccc ccctccaacc gaacttttgg acctgcagcc cttgcccgtg
3181 tctgctctga gaaacagtgc ctttgagagt ctttaccaag ataaatttcc tttcttcaat
3241 cccatccaga cccaggtgtt taacactgta tacaacagtg acgacaacgt gtttgtgggg
3301 gcccccacgg gcagcgggaa gactatttgt gcagagtttg ccatcctgcg aatgctgctg
3361 cagagctcgg aggggcgctg tgtgtacatc acccccatgg aggccctggc agagcaggta
3421 tacatggact ggtacgagaa gttccaggac aggctcaaca agaaggtggt actcctgaca
3481 ggcgagacca gcacagacct gaagctgctg ggcaaaggga acattatcat cagcacccct
3541 gagaagtggg acatactttc ccggcgatgg aagcagcgca agaacgtgca gaacatcaac
3601 ctcttcgtgg tggatgaggt ccaccttatc gggggcgaga atgggcctgt cttagaagtg
3661 atctgctccc gaatgcgcta catctcctcc cagattgagc ggcccattcg cattgtggca
3721 ctcagctctt cgctctccaa tgccaaggat gtggcccact ggctgggctg cagtgccacc
3781 tccaccttca acttccatcc caatgtgcgt cccgtcccct tggagctgca catccagggc
3841 ttcaacatca gccatacaca aacccgcctg ctctccatgg ccaagcctgt gtaccatgct
3901 atcaccaagc actcgcccaa gaagcctgtc attgtctttg tgccgtctcg caagcagacc
3961 cgcctcactg ccattgacat cctcaccacc tgtgcagcag acatccaacg gcagaggttc
4021 ttgcactgca ccgagaagga tctgattccg tacctggaga agctaagtga cagcacgctc
4081 aaggaaacgc tgctaaatgg ggtgggctac ctgcatgagg ggctcagccc catggagcga
4141 cgcctggtgg agcagctctt cagctcaggg gctatccagg tggtggtggc ttctcggagt
4201 ctctgctggg gcatgaacgt ggctgcccac ctggtaatca tcatggatac ccagtactac
4261 aatggcaaga tccacgccta tgtggattac cccatctatg acgtgcttca gatggtgggc
4321 cacgccaacc gccctttgca ggacgatgag gggcgctgtg tcatcatgtg tcagggctcc
4381 aagaaggatt tcttcaagaa gttcttatat gagccattgc cagtagaatc tcacctggac
4441 cactgtatgc atgaccactt caatgctgag atcgtcacca agaccattga gaacaagcag
4501 gatgctgtgg actacctcac ctggaccttt ctgtaccgcc gcatgacaca gaaccccaat
4561 tactacaacc tgcagggcat ctcccatcgt cacttgtcgg accacttgtc agagctggtg
4621 gagcagaccc tgagtgacct ggagcagtcc aagtgcatca gcatcgagga cgagatggac
4681 gtggcgcctc tgaacctagg catgatcgcc gcctactatt acatcaacta caccaccatt
4741 gagctcttca gcatgtccct caatgccaag accaaggtgc gagggcttat cgagatcatc
4801 tccaatgcag cagagtatga gaacattccc atccggcacc atgaagacaa tctcctgagg
4861 cagttggctc agaaggtccc ccacaagctg aataacccta agttcaatga tccgcacgtc
4921 aagaccaacc tgctcctgca ggctcacttg tctcgcatgc agctgagtgc tgagttgcag
4981 tcagatacgg aggaaatcct tagtaaggca atccggctca tccaggcctg cgtggatgtc
5041 ctttccagca atgggtggct cagccctgct ctggcagcta tggaactggc ccagatggtc
5101 acccaagcca tgtggtccaa ggactcatac ctgaagcagc tgccacactt cacctctgag
5161 catatcaaac gttgcacaga caagggagtg gagagtgttt tcgacatcat ggagatggag
5221 gatgaagaac ggaacgcgtt gcttcagctg actgacagcc agattgcaga tgtggctcgc
5281 ttttgtaacc gctaccctaa tatcgaacta tcttatgagg tggtagataa ggacagcatc
5341 cgcagtggcg ggccagttgt ggtgctggtg cagctggagc gagaggagga agtcacaggc
5401 cctgtcattg cgcctctctt cccgcagaaa cgtgaagagg gctggtgggt ggtgattgga
5461 gatgccaagt ccaatagcct catctccatc aagaggctga ccttgcagca gaaggccaag
5521 gtgaagttgg actttgtggc cccagccact ggtgcccaca actacactct gtacttcatg
5581 agtgacgctt acatgggatg tgaccaggag tacaaattca gcgtggatgt gaaagaagct
5641 gagacagaca gtgattcaga ttgagtcctg aggcatttac ttttgggtaa aggagagttg
5701 agcctgaatt aggaatgtgt acattgtagg aatcctggtt gtggggacca ggtctgtggg
5761 cctcaggtct ggccagccag ggctggtgct gtccccgcct acctccactt cctttccctt
5821 gctcactctg gatccagtga cagcaggtgt catgggtcaa gcataaatca tatatagcat
5881 tttcaggcat gttcctggta gttcttttga gtctgacatt ctaataaaat aatttgtaga
5941 aaaaaaaaaa aaaa
//