LOCUS BC112391 3644 bp mRNA linear HUM 01-SEP-2006
DEFINITION Homo sapiens ELKS/RAB6-interacting/CAST family member 2, mRNA (cDNA
clone MGC:133064 IMAGE:40008962), complete cds.
ACCESSION BC112391
VERSION BC112391.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3644)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3644)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (29-JAN-2006) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 17 Row: c Column: 14.
FEATURES Location/Qualifiers
source 1..3644
/db_xref="H-InvDB:HIT000340488"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:133064 IMAGE:40008962"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_283"
/note="Vector: pCR-Blunt II-TOPO with reversed insert;
Clone identification sequence tag: AGGTAGCG"
gene 1..3644
/gene="ERC2"
/gene_synonym="CAST"
/gene_synonym="CAST1"
/gene_synonym="ELKSL"
/gene_synonym="KIAA0378"
/gene_synonym="SPBC110"
/gene_synonym="Spc110"
/db_xref="GeneID:26059"
/db_xref="HGNC:HGNC:31922"
CDS 231..3104
/gene="ERC2"
/gene_synonym="CAST"
/gene_synonym="CAST1"
/gene_synonym="ELKSL"
/gene_synonym="KIAA0378"
/gene_synonym="SPBC110"
/gene_synonym="Spc110"
/codon_start=1
/product="ELKS/RAB6-interacting/CAST family member 2"
/protein_id="AAI12392.1"
/db_xref="GeneID:26059"
/db_xref="HGNC:HGNC:31922"
/translation="MYGSARTITNLEGSPSRSPRLPRSPRLGHRRTSSGGGGGTGKTL
SMENIQSLNAAYATSGPMYLSDHEGVASTTYPKGTMTLGRATNRAVYGGRVTAMGSSP
NIASAGLSHTDVLSYTDQHGGLTGSSHHHHHQVPSMLRQVRDSTMLDLQAQLKELQRE
NDLLRKELDIKDSKLGSSMNSIKTFWSPELKKERVLRKEEAARMSVLKEQMRVSHEEN
QHLQLTIQALQDELRTQRDLNHLLQQESGNRGAEHFTIELTEENFRRLQAEHDRQAKE
LFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLPSKSLEDDNERTRRMAE
AESQVSHLEVILDQKEKENIHLREELHRRSQLQPEPAKTKALQTVIEMKDTKIASLER
NIRDLEDEIQMLKANGVLNTEDREEEIKQIEVYKSHSKFMKTKIDQLKQELSKKESEL
LALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNK
KTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLK
DRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRERDDRERLEEIESFRKENKD
LKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECSKLE
AQLKKAHNIEDDSRMNPEFADQIKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEK
NDKDKKIAELESLTLRHMKDQNKKVANLKHNQQLEKKKNAQLLEEVRRREDSMADNSQ
HLQIEELMNALEKTRQELDATKARLASTQQSLAEKEAHLANLRIERRKQLEEILEMKQ
EALLAAISEKDANIALLELSASKKKKTQEEVMALKREKDRLVHQLKQQTQNRMKLMAD
NYDDDHHHYHHHHHHHHHRSPGRSQHSNHRPSPDQDDEEGIWA"
BASE COUNT 1202 a 778 c 908 g 756 t
ORIGIN
1 cggctcctgc tcctcctggc cgcccggggc caaggcgacg agaggttgta aaaatccatg
61 tgggacggcc ccggggcgag catcggaaag atctctgagt ggagttattt tctggtacgg
121 actgtgaaaa gaatgcggtg aaaattctgg acaatcgtgg aaatattagc tcaaacccca
181 acttaatata gcatttcttc tcttcagtaa cacctcataa tacaagaaaa atgtatggaa
241 gtgcaagaac aatcaccaat ctggaaggta gcccttccag atcccctcgt ttgccaaggt
301 ctcctcgttt gggccaccga agaacaagta gtgggggagg tggaggaaca ggcaagactc
361 tgtctatgga gaatatccag tccctcaatg cagcctatgc tacgtctgga cccatgtatc
421 tgagtgatca tgaaggggtg gcttcaacaa cctacccaaa gggcactatg actctgggaa
481 gggctacaaa tcgagctgta tatggaggcc gtgtcacagc catggggagt agtcccaata
541 ttgcttctgc tggactttcc cacacagatg tcctttcata cacagatcaa catggtgggc
601 tgactggctc atcccatcat caccaccacc aggtcccctc catgttgagg caggtaagag
661 acagcacaat gttagatctt caggcccagc tgaaagaact gcagagagag aatgacctcc
721 tccggaaaga gctagacatc aaggacagca aattgggatc ttccatgaac agtattaaga
781 ctttctggag tcctgagctt aagaaggaga gagtcttgag gaaagaagag gcagcgcgga
841 tgtctgtcct caaggagcag atgagggttt cccatgaaga aaatcagcac ctacagttga
901 caatccaggc ccttcaagat gagctgcgaa cccagagaga cctcaaccac ctcctccagc
961 aagagagtgg caaccgagga gcggagcact tcaccatcga gctgaccgag gagaacttta
1021 ggcggctcca agccgagcat gacaggcagg ctaaggagct gttccttttg aggaagacat
1081 tagaggaaat ggagctgaga attgaaacgc agaaacaaac cctcaatgcc cgagatgagt
1141 caattaaaaa acttcttgag atgttgcaaa gtaaaggctt gccatccaaa agcctggagg
1201 atgacaatga gcgaacgcgg cggatggcag aggctgagtc tcaggtcagc cacttggaag
1261 tgattttaga tcagaaagag aaggaaaaca tacatcttag agaggaattg caccgaagaa
1321 gccaacttca gccggagcca gccaagacga aggctctcca gactgtcatc gaaatgaagg
1381 acacaaaaat cgcttcattg gaacgaaaca taagggatct tgaggatgag atccagatgt
1441 taaaagccaa tggtgtgctg aacactgagg accgcgaaga agagatcaaa caaattgagg
1501 tttacaaaag tcactccaag tttatgaaga ccaagattga tcagctgaag caggaacttt
1561 caaagaaaga gtcggaactt cttgccttac aaacaaagct tgaaaccctc agcaatcaaa
1621 attcagattg caagcaacac attgaagtgc tcaaagagtc acttactgcc aaagaacaga
1681 gggctgccat ccttcagact gaggtagatg cgctgagatt acgactggaa gaaaaagaat
1741 ctttcctcaa taaaaaaaca aaacagctac aggacctcac agaagagaag gggacactgg
1801 ccggtgaaat tcgtgacatg aaagatatgt tagaagtgaa ggaaagaaaa atcaatgttc
1861 ttcagaaaaa gattgaaaac ttgcaagaac aacttaggga taaagacaag caactgacca
1921 acctgaaaga cagagtgaag tccttgcaga cggattccag taatacagat actgcactgg
1981 cgacgctaga ggaagctctg tcagagaagg agagaataat tgagcgcttg aaagaacagc
2041 gagaaagaga tgatcgggaa agactagaag agatagaatc cttccgaaaa gagaacaaag
2101 acctgaaaga gaaggtcaat gctttacagg ctgaactgac tgagaaagag tctagtttaa
2161 ttgacctcaa agaacatgca tcttcattag cctctgcggg gctgaaaagg gattccaaat
2221 taaaatctct agaaatagcc attgaacaaa agaaagagga atgtagcaaa ttggaagcac
2281 agttaaaaaa ggcacataat attgaagatg actccaggat gaaccctgag tttgcagacc
2341 aaataaaaca gctcgataaa gaggcgtctt actaccgcga cgagtgtggc aaggcccaag
2401 cggaagtgga ccggttgctg gagatcctca aggaggtgga gaatgagaag aatgacaagg
2461 acaagaagat cgcagaactg gagagcttga ctctcaggca tatgaaagat cagaataaga
2521 aggtggccaa cctcaagcac aatcaacagt tggaaaagaa gaaaaatgct cagttactag
2581 aagaagtgcg caggcgagaa gacagcatgg ctgacaactc acagcatttg cagatagagg
2641 aactgatgaa tgcactggag aagaccagac aggaactgga tgccaccaaa gcacgcctcg
2701 cctccacaca acagtccctg gccgaaaaag aagcgcactt ggccaacctc cggattgaga
2761 ggaggaaaca gctggaggag atcctggaga tgaaacagga agcactactt gcagccatca
2821 gtgaaaaaga tgcaaacatt gccttgctgg aattgtctgc ctccaaaaag aaaaagacgc
2881 aggaagaagt catggccctc aagcgggaaa aagaccgact agtacatcaa ttaaagcagc
2941 agacccagaa cagaatgaag ttgatggcag acaactatga tgatgaccat caccattacc
3001 accaccacca ccatcaccac caccatcgat ctcctgggag gtcgcaacat tccaatcaca
3061 ggccctctcc ggaccaggat gacgaggagg gcatatgggc atagccgggc ctgtaaacca
3121 aagttccagt tttgttttga gggctattag aagggctgaa taaagggaac atgcagctct
3181 gcagcaatat tctgataatg tattgcagtg cggctcacat cactgtccac caccacctgg
3241 agcggctcat cagaactgaa ggggagtttt cacttacctt attgagcgtg attctgttct
3301 acttgatatt tccttcacca cctcatgtca tttctcatgg atttggttat gatggaaagg
3361 aagaatgcag aggaggagaa aagtgacaga tcctccattt ttgttgggat gcgggcattt
3421 tgaatgtgat catctttgct gaatgtcatt atttgataac attttgttta tgttacttaa
3481 acatcattgg ataaatttga actccatggg attttatctg tggattcagc ttctgttgga
3541 caactagcct catctccagt atcctgctgg ttcagtctaa ttggtcattc ctaatgcatt
3601 agattatcaa aaagtataaa ttcgctgtga gtgagtggtg ttgg
//