LOCUS BC112357 1816 bp mRNA linear HUM 21-JAN-2006
DEFINITION Homo sapiens chromosome 9 open reading frame 84, mRNA (cDNA clone
IMAGE:40033702), complete cds.
ACCESSION BC112357
VERSION BC112357.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1816)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1816)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (20-JAN-2006) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 17 Row: j Column: 10
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1816
/db_xref="H-InvDB:HIT000340476"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:40033702"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_283"
/note="Vector: pCR-Blunt II-TOPO with reversed insert;
Clone identification sequence tag: GGATTGTG"
gene 1..1816
/gene="C9orf84"
/gene_synonym="FLJ32779"
/db_xref="GeneID:158401"
/db_xref="HGNC:HGNC:26535"
/db_xref="IMGT/GENE-DB:26535"
/db_xref="MIM:26535"
CDS 74..1540
/gene="C9orf84"
/gene_synonym="FLJ32779"
/codon_start=1
/product="C9orf84 protein"
/protein_id="AAI12358.1"
/db_xref="GeneID:158401"
/db_xref="HGNC:HGNC:26535"
/db_xref="IMGT/GENE-DB:26535"
/db_xref="MIM:26535"
/translation="MFSALKYHAIDYLYENVVRKKFYRDALLLRIPSCLYQDESYHVA
VTDNKFRRPWTRVSAVSVPGMTDTSVLDQWKASFFVEDFLEKKTITRMVTQINCEFEE
VVPSSNPDSQIEVEEVSLYTHMDYNEVFTPVSCLEKCSALQNQNQDLFIDDKGILFVS
SRKHLPTLPTLLSRLKLFLVKDPLLDFKGQIFTEANFSRECFSLQETLEAFVKEDFCM
DKVNFCQEKLEDTICLNEPSSFLIEYEFLIPPSLKPEIDIPSLSELKELLNPVPEIIN
YVDEKEKLFERDLTNKHGIEDIGDIKFSSTEILTIQSQSEPEECSKPGELEMPLTPLF
LTCQHSSVNSLRTELQTFPLSPVCKINLLTAEESANEYYMMWQLERCRSPLNPFLLTV
PRIQEPHSQYSVTDLKKIFSVKEESLVINLEKAEWWKQAGLNLKMMETLEHLNTYLCH
DNLSSNDTKIEIFLPTKVLQLECKYITVNISYVNIFRM"
BASE COUNT 613 a 300 c 336 g 567 t
ORIGIN
1 ccccaggaag agatgcagga ggcgattttt acctcagatg ttgaaattta cactgctttg
61 aaagaaagaa gatatgtttt cagcattgaa atatcatgca atagactatt tatatgagaa
121 tgtggttaga aagaagtttt acagagatgc tttattgctt cgaatccctt catgtttata
181 tcaagatgaa agttaccatg tagcagttac tgataataaa tttaggaggc catggacgag
241 agtctcagct gtttcagttc cgggaatgac agatacctca gtcttggacc aatggaaagc
301 aagtttcttt gtggaggatt tccttgagaa aaaaacaatt acaagaatgg tgacccagat
361 taattgtgaa tttgaggaag ttgttccaag ttcaaatcca gactcccaaa ttgaagtaga
421 ggaggtcagt ttatacaccc acatggacta caatgaagtc tttacccctg tcagttgttt
481 agaaaaatgt tcagcacttc aaaaccagaa ccaagattta tttattgatg ataaaggaat
541 actttttgta agtagtagaa aacacctacc aactttgcct actctcttga gtagactaaa
601 actgtttttg gtaaaggatc ctcttttaga tttcaaagga cagatcttca cagaagctaa
661 tttttccagg gaatgtttct ctcttcaaga aactttggaa gcttttgtga aagaagattt
721 ttgtatggat aaagtgaact tttgtcaaga gaaactagaa gatacaatat gtttaaatga
781 gccgtcaagt tttcttattg agtatgaatt cttaatacct ccaagcctca aaccagaaat
841 tgatattcca tcactctcag aactgaagga gttattaaac ccagtgccag aaataataaa
901 ctatgtagat gaaaaggaaa agctttttga aagagatctt actaacaagc atggaattga
961 ggatatcggg gatataaaat tcagctccac agagattttg accattcaaa gccagagtga
1021 accagaagag tgcagtaaac caggagagtt agaaatgcca ctaactcctc tattcctaac
1081 atgccaacat tcttcagtga attcattacg tacagaactt cagacatttc cattatctcc
1141 ggtttgtaaa attaatttgc ttactgctga agaatcagct aatgaatact acatgatgtg
1201 gcaattagaa agatgtagaa gccctttgaa cccatttttg cttacagtgc caagaattca
1261 agagccccac agccaatatt cagttacaga tttgaaaaag atattttctg ttaaagaaga
1321 aagccttgtg attaatctgg aaaaggcaga gtggtggaaa caagcaggac taaatctgaa
1381 aatgatggaa acattggaac atctgaatac atatttatgt catgataatt tgtcttctaa
1441 tgacactaaa attgagatat ttttgcctac gaaagtgctt caattagaat gtaagtacat
1501 cacagtaaat attagttatg taaacatttt cagaatgtga aaatgttaga ttctggattt
1561 cctctaggta attgggaaaa tcactaggtt ctagcattcc atataggccc tggctctgcc
1621 agaatttatg actttggatt tctctaggtc ccattttctt gaaaaaatga tgaagtttga
1681 ctagctaacc ctaaaatctt gttatgtcct aaaattctat agtctcagtt tttaaatttc
1741 tagccatttt catttaaagt gactttgttt ccttttataa atgattaaat tgctagcagt
1801 ttccgttcac attggc
//