LOCUS BC112246 1703 bp mRNA linear HUM 21-JAN-2006
DEFINITION Homo sapiens poly(A)-specific ribonuclease (PARN)-like domain
containing 1, mRNA (cDNA clone MGC:138451 IMAGE:8327714), complete
cds.
ACCESSION BC112246
VERSION BC112246.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1703)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1703)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (19-JAN-2006) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein, NIMH
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 4 Row: m Column: 24.
FEATURES Location/Qualifiers
source 1..1703
/db_xref="H-InvDB:HIT000340375"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:138451 IMAGE:8327714"
/tissue_type="Brain, cerebral cortex and lung, PCR rescued
clones"
/clone_lib="NIH_MGC_323"
/note="Vector: pCR4-TOPO with reversed insert; Clone
identification sequence tag: CGCTAGCC"
gene 1..1703
/gene="PNLDC1"
/gene_synonym="dJ195P10.2"
/gene_synonym="FLJ40240"
/db_xref="GeneID:154197"
/db_xref="HGNC:HGNC:21185"
/db_xref="IMGT/GENE-DB:21185"
/db_xref="MIM:21185"
CDS 76..1638
/gene="PNLDC1"
/gene_synonym="dJ195P10.2"
/gene_synonym="FLJ40240"
/codon_start=1
/product="poly(A)-specific ribonuclease (PARN)-like domain
containing 1"
/protein_id="AAI12247.1"
/db_xref="GeneID:154197"
/db_xref="HGNC:HGNC:21185"
/db_xref="IMGT/GENE-DB:21185"
/db_xref="MIM:21185"
/translation="MFCTRGLLFFAFLAGLDIEFTGLRSNLSGPQQISLFDLPSEWYL
KTRQSVQQFTVCQIGLSVFSAIEGEANKYIAHSCNFYLFPTTFGILDSEFSFQASSVQ
FLNQYGFNYNKFLKNGIPYMNEEQEKKIRHDILTGNWRVRSSPDKDQIKVVIDEVTRW
LELAKEGDWMTLPGITGFQAFEVQLVLRQALPNIWTVLKDEGVVVKKVSKQHRWYLQN
TSCDRESCWKENILLSARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESY
DQFKQNIHSLFPVLIDTKSVTKDIWKEMNFPRVSNLSEVYEVLNSDLNPTKNSGPEIV
HASRCEKYVETKCPHEAAYDAFLCGSVLLKVAHLLLQKIYHIDPVPESSFPQYLDVLA
PYVNQVNLIRAGVPKINFSGPDYPSIRPPILILSVKRWPGVSEQQVYHKFQNLCKFDV
RRLTRSQFLLLTNKFKDARNILKEYRDHPTLCISLYRYWRHSPNVNCLLQVCGIVTAW
ALLAFILGRSGT"
BASE COUNT 411 a 423 c 435 g 434 t
ORIGIN
1 caggaggccg acttcgtgga ggtgagcgcg ggtgccttgg ccgcctgcag atctacagtg
61 tgaggagtgc tggcgatgtt ctgcacccga ggactgctat tttttgcctt cctggcaggt
121 ctggacatag agttcacggg ccttcgttct aacctgtctg ggccccagca gatcagtctt
181 tttgatttgc catcggagtg gtatctaaag acccgtcaga gtgttcagca atttacagtc
241 tgtcagattg gattgtctgt gttttccgct attgaaggag aggcaaacaa gtatatagcc
301 cattcgtgta acttctatct cttccctaca acgtttggga ttttggactc agaattctcc
361 ttccaggctt ccagtgttca gtttttgaat cagtatggct tcaactataa caagtttctc
421 aaaaacggaa tcccatatat gaatgaagaa caggagaaga aaattagaca cgatatcctg
481 actgggaact ggagagttcg cagctctccg gataaagacc aaatcaaggt ggtgattgac
541 gaagtgacgc ggtggctgga gctggccaag gaaggcgact ggatgactct tcctgggatc
601 actggcttcc aggcctttga ggtccaactg gtgctgaggc aggccctccc caacatctgg
661 acggtgctga aagatgaggg ggtggtagtg aagaaagtga gtaaacaaca tcgttggtat
721 cttcagaaca cctcttgtga ccgagagagc tgttggaagg aaaatattct tctctcagca
781 aggggttttt ctgtcttttt ccaaatgctg gtgaaagccc agaagccctt agtgggacat
841 aatatgatga tggacctgct gcacctccat gagaagttct tcagacccct cccagaaagc
901 tacgatcaat ttaagcagaa tatccacagc ctatttcctg ttctcattga taccaagagt
961 gtaacaaagg atatctggaa ggagatgaat ttcccgaggg tgtcgaatct ttcggaagtc
1021 tatgaagtcc tgaacagtga cttgaatccc accaagaatt ctggaccaga gattgttcac
1081 gcgagcaggt gtgagaaata tgttgagaca aagtgccccc acgaagccgc gtatgatgcc
1141 ttcctctgtg ggtcagttct tttgaaagtg gcacacttgc ttctacagaa gatataccac
1201 atcgaccccg tgcccgagtc atcctttcct cagtaccttg acgtgctggc tccttacgtg
1261 aaccaagtga acctcatccg agcgggggtc ccaaagatca atttttctgg tccagattat
1321 cccagtatcc gacctcccat cctcatcctc agcgtcaaaa ggtggcctgg ggtcagcgag
1381 cagcaagtct accataagtt tcagaatctc tgcaagtttg atgtcaggcg actcacaaga
1441 agccagttct tactcctgac caataagttt aaggatgcgc ggaacatcct gaaggagtac
1501 cgggaccacc cgaccctgtg catctccctg taccgctact ggaggcactc cccaaacgtc
1561 aactgcctgc tccaagtctg tggcatagtg actgcctggg cccttctcgc gttcatcctt
1621 ggaagatctg gtacctgagt gcagcgaggc ctcctgcggc caccctcggg tccccatgct
1681 ctctgggagg tgtgctgggt gtg
//