LOCUS BC112242 1565 bp mRNA linear HUM 21-JAN-2006
DEFINITION Homo sapiens nyctalopin, mRNA (cDNA clone MGC:138447
IMAGE:8327710), complete cds.
ACCESSION BC112242
VERSION BC112242.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1565)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1565)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (19-JAN-2006) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein, NIMH
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 4 Row: m Column: 20.
FEATURES Location/Qualifiers
source 1..1565
/db_xref="H-InvDB:HIT000340371"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:138447 IMAGE:8327710"
/tissue_type="Brain, cerebral cortex and lung, PCR rescued
clones"
/clone_lib="NIH_MGC_323"
/note="Vector: pCR4-TOPO with reversed insert; Clone
identification sequence tag: CACGGTCA"
gene 1..1565
/gene="NYX"
/gene_synonym="CLRP"
/db_xref="GeneID:60506"
/db_xref="HGNC:HGNC:8082"
/db_xref="IMGT/GENE-DB:8082"
/db_xref="MIM:300278"
CDS 45..1490
/gene="NYX"
/gene_synonym="CLRP"
/codon_start=1
/product="nyctalopin"
/protein_id="AAI12243.1"
/db_xref="GeneID:60506"
/db_xref="HGNC:HGNC:8082"
/db_xref="IMGT/GENE-DB:8082"
/db_xref="MIM:300278"
/translation="MKGRGMLVLLLHAVVLGLPSAWAVGACARACPAACACSTVERGC
SVRCDRAGLLRVPAELPCEAVSIDLDRNGLRFLGERAFGTLPSLRRLSLRHNNLSFIT
PGAFKGLPRLAELRLAHNGDLRYLHARTFAALSRLRRLDLAACRLFSVPERLLAELPA
LRELAAFDNLFRRVPGALRGLANLTHAHLERGRIEAVASSSLQGLRRLRSLSLQANRV
RAVHAGAFGDCGVLEHLLLNDNLLAELPADAFRGLRRLRTLNLGGNALDRVARAWFAD
LAELELLYLDRNSIAFVEEGAFQNLSGLLALHLNGNRLTVLAWVAFQPGFFLGRLFLF
RNPWCCDCRLEWLRDWMEGSGRVTDVPCASPGSVAGLDLSQVTFGRSSDGLCVDPEEL
NLTTSSPGPSPEPAATTVSRFSSLLSKLLAPRVPVEEAANTTGGLANASLSDSLSSRG
VGGAGRQPWFLLASCLLPSVAQHVVFGLQMD"
BASE COUNT 184 a 588 c 525 g 268 t
ORIGIN
1 caggtagggg tcccacggct gggtggtcct aagccactgg gtggatgaaa ggccgaggga
61 tgttggtcct gcttctgcat gcggtggtcc tcggcctgcc cagcgcctgg gccgtggggg
121 cctgcgcccg cgcttgtccc gccgcctgcg cctgcagcac cgtggagcgc ggctgctcgg
181 tgcgctgcga ccgcgcgggc ctcctgcggg tgccggccga gctcccgtgc gaggcggtct
241 ccatcgacct ggaccggaac ggcctgcgct tcctgggcga gcgagccttc ggcacgctgc
301 cgtccttgcg ccgcctgtcg ctgcgccaca acaacctgtc cttcatcacg cccggcgcct
361 tcaagggcct gccgcgcctg gctgagctgc gcctggcgca caacggcgac ctgcgctacc
421 tgcacgcgcg caccttcgcg gcgctcagcc gcctgcgccg cctagaccta gcagcctgcc
481 gcctcttcag cgtgcccgag cgcctcctgg ccgaactgcc ggccctgcgc gaactcgccg
541 ccttcgacaa cctgttccgc cgcgtgccgg gcgcgctgcg cggcctggcc aacctgacgc
601 acgcgcacct ggagcgcggc cgcatcgagg cggtggcctc cagctcgctg cagggcctgc
661 gccgcctgcg ctcgctcagc ctgcaggcca accgcgtccg tgccgtgcac gctggcgcct
721 tcggggactg tggcgtcctg gagcatctgc tgctcaacga caacctgctg gccgagctcc
781 cggccgacgc cttccgcggc ctgcggcgcc tgcgcacgct caacctgggt ggcaacgcgc
841 tggaccgcgt ggcgcgcgcc tggttcgctg acctggccga gctcgagctg ctctacctgg
901 accgcaacag catcgccttc gtggaggagg gcgccttcca gaacctctcg ggtctcctcg
961 cgctgcacct caacggcaac cgcctcaccg tgctcgcctg ggtcgccttc cagcccggct
1021 tcttcctggg ccgcctcttc ctcttccgca acccgtggtg ctgcgactgc cgtctggagt
1081 ggctgaggga ctggatggag ggctccggac gtgtcaccga cgtgccgtgc gcctccccgg
1141 gctccgtggc cggcctggac ctcagccagg tgaccttcgg gcgctcctcc gatggcctct
1201 gtgtggaccc cgaggagctg aacctcacca cgtccagtcc aggcccgtcc ccagaaccag
1261 cggccaccac cgtgagcagg ttcagcagcc tcctctccaa gctgctggcc ccgagggtcc
1321 cggtggagga ggcggccaac accactgggg ggctggccaa cgcctccctg tccgacagcc
1381 tctcctcccg tggggtggga ggcgcgggcc ggcagccctg gtttctcctc gcctcttgtc
1441 tcctgcccag cgtggcccag cacgtggtgt ttggcctgca gatggactga cctggccaga
1501 ggggggaaag tttgcttaac tgggcttgag tgtgtttgtg gtaaggggag aggagccgga
1561 atgga
//