LOCUS BC112238 2117 bp mRNA linear HUM 21-JAN-2006 DEFINITION Homo sapiens sphingomyelin phosphodiesterase 3, neutral membrane (neutral sphingomyelinase II), mRNA (cDNA clone MGC:138443 IMAGE:8327706), complete cds. ACCESSION BC112238 VERSION BC112238.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2117) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2117) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (19-JAN-2006) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Mike Brownstein, NIMH cDNA Library Preparation: British Columbia Cancer Research Center cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRCB Plate: 4 Row: m Column: 16. FEATURES Location/Qualifiers source 1..2117 /db_xref="H-InvDB:HIT000340367" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:138443 IMAGE:8327706" /tissue_type="Brain, cerebral cortex and lung, PCR rescued clones" /clone_lib="NIH_MGC_323" /note="Vector: pCR4-TOPO with reversed insert; Clone identification sequence tag: GAGTGCCG" gene 1..2117 /gene="SMPD3" /gene_synonym="FLJ22593" /gene_synonym="NSMASE2" /db_xref="GeneID:55512" /db_xref="HGNC:HGNC:14240" /db_xref="IMGT/GENE-DB:14240" /db_xref="MIM:605777" CDS 78..2045 /gene="SMPD3" /gene_synonym="FLJ22593" /gene_synonym="NSMASE2" /codon_start=1 /product="sphingomyelin phosphodiesterase 3, neutral membrane" /protein_id="AAI12239.1" /db_xref="GeneID:55512" /db_xref="HGNC:HGNC:14240" /db_xref="IMGT/GENE-DB:14240" /db_xref="MIM:605777" /translation="MVLYTTPFPNSCLSALHCVSWALIFPCYWLVDRLAASFIPTTYE KRQRADDPCCLQLLCTALFTPIYLALLVASLPFAFLGFLFWSPLQSARRPYIYSRLED KGLAGGAALLSEWKGTGPGKSFCFATANVCLLPDSLARVNNLFNTQARAKEIGQRIRN GAARPQIKIYIDSPTNTSISAASFSSLVSPQGGDGVARAVPGSIKRTASVEYKGDGGR HPGDEAANGPASGDPVDSSSPEDACIVRIGGEEGGRPPEADDPVPGGQARNGAGGGPR GQTPNHNQQDGDSGSLGSPSASRESLVKGRAGPDTSASGEPGANSKLLYKASVVKKAA ARRRRHPDEAFDHEVSAFFPANLDFLCLQEVFDKRAATKLKEQLHGYFEYILYDVGVY GCQGCCSFKCLNSGLLFASRYPIMDVAYHCYPNKCNDDALASKGALFLKVQVGSTPQD QRIVGYIACTHLHAPQEDSAIRCGQLDLLQDWLADFRKSTSSSSAANPEELVAFDVVC GDFNFDNCSSDDKLEQQHSLFTHYRDPCRLGPGEEKPWAIGTLLDTNGLYDEDVCTPD NLQKVLESEEGRREYLAFPTSKSSGQKGRKELLKGNGRRIDYMLHAEEGLCPDWKAEV EEFSFITQLSGLTDHLPVAMRLMVSSGEEEA" BASE COUNT 403 a 691 c 653 g 370 t ORIGIN 1 accctcgccc aggaaagtgc ccgcagctgc cacggacacc atgtagtagg gccggctgcg 61 gcgcccagtg agctgcgatg gttttgtaca cgaccccctt tcctaacagc tgtctgtccg 121 ccctgcactg tgtgtcctgg gcccttatct ttccatgcta ctggctggtg gaccggctcg 181 ctgcctcctt catacccacc acctacgaga agcgccagcg ggcagacgac ccgtgctgcc 241 tgcagctgct ctgcactgcc ctcttcacgc ccatctacct ggccctcctg gtggcctcgc 301 tgccctttgc gtttctcggc tttctcttct ggtccccact gcagtcggcc cgccggccct 361 acatctattc acggctggaa gacaagggcc tggccggtgg ggcagccctg ctcagtgaat 421 ggaagggcac ggggcctggc aaaagcttct gctttgccac tgccaacgtc tgcctcctgc 481 ccgactcact cgccagggtc aacaaccttt ttaacaccca agcgcgggcc aaggagatcg 541 ggcagagaat ccgcaatggg gccgcccggc cccagatcaa aatttacatc gactccccca 601 ccaatacctc catcagcgcc gctagcttca gcagcctggt gtcaccacag ggcggcgatg 661 gggtggcccg ggccgtcccc gggagcatta agaggacagc ctctgtggag tacaagggtg 721 acggtgggcg gcaccccggt gacgaggctg ccaacggccc agcctctggg gaccctgtcg 781 acagcagcag cccggaggat gcctgcatcg tgcgcatcgg tggcgaggag ggcggccggc 841 cacctgaagc tgacgaccct gtgcctgggg gccaggccag gaacggagct ggcgggggcc 901 caaggggcca gacgcccaac cataatcagc aggacgggga ttcagggagc ctgggcagcc 961 cctcggcctc ccgggagtcc ctggtgaagg ggcgagctgg gccagacacc agtgccagcg 1021 gggagccagg tgccaacagc aagctcctgt acaaggcctc ggtggtgaag aaggcggctg 1081 cacgcaggag gcggcacccc gacgaggcct tcgaccatga ggtctccgcc ttcttccccg 1141 ccaacctgga cttcctgtgc ctgcaggagg tgtttgacaa gcgagcagcc accaaattga 1201 aagagcagct gcacggctac ttcgagtaca tcctgtacga cgtcggggtc tacggctgcc 1261 agggctgctg cagcttcaag tgtctcaaca gcggcctcct ctttgccagc cgctacccca 1321 tcatggacgt ggcctatcac tgttacccca acaagtgtaa cgacgatgcc ctggcctcta 1381 agggagctct gtttctcaag gtgcaggtgg gaagcacacc tcaggaccaa agaatcgtcg 1441 ggtacatcgc ctgcacacac ctgcatgccc cgcaagagga cagcgccatc cggtgtgggc 1501 agctggacct gcttcaggac tggctggctg atttccgaaa atctacctcc tcgtccagcg 1561 cagccaaccc cgaggagctg gtggcatttg acgtcgtctg tggagatttc aactttgata 1621 actgctcctc tgacgacaag ctggagcagc aacactccct gttcacccac tacagggacc 1681 cctgccgcct ggggcctggt gaggagaagc cgtgggccat cggtactctg ctggacacga 1741 acggcctgta cgatgaggat gtgtgcaccc ccgacaacct gcagaaggtc ctggagagtg 1801 aggagggccg cagggagtac ctggcgtttc ccaccagcaa gagctcgggc cagaaggggc 1861 ggaaggagct gctgaagggc aacggccggc gcatcgacta catgctgcat gcagaggagg 1921 ggctgtgccc agactggaag gccgaggtgg aagaattcag ttttatcacc cagctgtccg 1981 gcctgacgga ccacctgcca gtagccatgc gactgatggt gtcttcgggg gaggaggagg 2041 catagaccgt ccggagcagc ggggcctctg ccagcccttg cagctgcagc ccatccctgg 2101 gccatgtccc ctccatc //