LOCUS BC112099 654 bp mRNA linear HUM 21-JAN-2006
DEFINITION Homo sapiens C-type lectin domain family 5, member A, mRNA (cDNA
clone MGC:138304 IMAGE:8327567), complete cds.
ACCESSION BC112099
VERSION BC112099.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 654)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 654)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (19-JAN-2006) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein, NIMH
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 4 Row: g Column: 21.
FEATURES Location/Qualifiers
source 1..654
/db_xref="H-InvDB:HIT000340228"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:138304 IMAGE:8327567"
/tissue_type="Lung and heart, PCR rescued clones"
/clone_lib="NIH_MGC_315"
/note="Vector: pCR4-TOPO with reversed insert; Clone
identification sequence tag: CCAGTCCG"
gene 1..654
/gene="CLEC5A"
/gene_synonym="MDL-1"
/gene_synonym="MDL1"
/db_xref="GeneID:23601"
/db_xref="HGNC:HGNC:2054"
/db_xref="IMGT/GENE-DB:2054"
/db_xref="MIM:604987"
CDS 22..588
/gene="CLEC5A"
/gene_synonym="MDL-1"
/gene_synonym="MDL1"
/codon_start=1
/product="C-type lectin, superfamily member 5"
/protein_id="AAI12100.1"
/db_xref="GeneID:23601"
/db_xref="HGNC:HGNC:2054"
/db_xref="IMGT/GENE-DB:2054"
/db_xref="MIM:604987"
/translation="MNWHMIISGLIVVVLKVVGMTLFLLYFPQIFNKSNDGFTTTRSY
GTVSQIFGSSSPSPNGFITTRSYGTVCPKDWEFYQARCFFLSTSESSWNESRDFCKGK
GSTLAIVNTPEKLKFLQDITDAEKYFIGLIYHREEKRWRWINNSVFNGNVTNQNQNFN
CATIGLTKTFDAASCDISYRRICEKNAK"
BASE COUNT 192 a 143 c 135 g 184 t
ORIGIN
1 ggcccctgca gctccttcat catgaactgg cacatgatca tctctgggct tattgtggta
61 gtgcttaaag ttgttggaat gaccttattt ctactttatt tcccacagat ttttaacaaa
121 agtaacgatg gtttcaccac caccaggagc tatggaacag tctcacagat ttttgggagc
181 agttccccaa gtcccaacgg cttcattacc acaaggagct atggaacagt ctgccccaaa
241 gactgggaat tttatcaagc aagatgtttt ttcttatcca cttctgaatc atcttggaat
301 gaaagcaggg acttttgcaa aggaaaagga tccacattgg caattgtcaa cacgccagag
361 aaactgaagt ttcttcagga cataactgat gctgagaagt attttattgg cttaatttac
421 catcgtgaag agaaaaggtg gcgttggatc aacaactctg tgttcaatgg caatgttacc
481 aatcagaatc agaatttcaa ctgtgcgacc attggcctaa caaagacatt tgatgctgca
541 tcatgtgaca tcagctaccg caggatctgt gagaagaatg ccaaatgatc acagttccct
601 gtgacaagaa ctatacttgc aactcttttt gaatccatac aggtcgtctg gcca
//