LOCUS BC112084 2616 bp mRNA linear HUM 21-JUL-2006
DEFINITION Homo sapiens protocadherin gamma subfamily A, 1, mRNA (cDNA clone
MGC:138289 IMAGE:8327552), complete cds.
ACCESSION BC112084
VERSION BC112084.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2616)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2616)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (19-JAN-2006) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein, NIMH
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 4 Row: g Column: 6.
FEATURES Location/Qualifiers
source 1..2616
/db_xref="H-InvDB:HIT000340213"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:138289 IMAGE:8327552"
/tissue_type="Lung, PCR rescued clones"
/clone_lib="NIH_MGC_299"
/note="Vector: pCR4-TOPO with reversed insert; Clone
identification sequence tag: ACCGGCCC"
gene 1..2616
/gene="PCDHGA1"
/gene_synonym="PCDH-GAMMA-A1"
/db_xref="GeneID:56114"
/db_xref="HGNC:HGNC:8696"
/db_xref="MIM:606288"
CDS 49..2520
/gene="PCDHGA1"
/gene_synonym="PCDH-GAMMA-A1"
/codon_start=1
/product="protocadherin gamma subfamily A, 1"
/protein_id="AAI12085.1"
/db_xref="GeneID:56114"
/db_xref="HGNC:HGNC:8696"
/db_xref="MIM:606288"
/translation="MKIQKKLTGCSRLMLLCLSLELLLEAGAGNIHYSVPEETDKGSF
VGNIAKDLGLQPQELADGGVRIVSRGRMPLFALNPRSGSLITARRIDREELCAQSMPC
LVSFNILVEDKMKLFPVEVEIIDINDNTPQFQLEELEFKMNEITTPGTRISLPFGQDL
DVGMNSLQSYQLSSNPHFSLDVQQGADGPQHPEMVLQSPLDREEEAVHHLILTASDGG
EPVRSGTLRIYIQVVDANDNPPAFTQAQYHINVPENVPLGTQLLMVNATDPDEGANGE
VTYSFHNVDHRVAQIFRLDSYTGEISNKEPLDFEEYKMYSMEVQAQDGAGLMAKVKVL
IKVLDVNDNAPEVTITSVTTAVPENFPPGTIIALISVHDQDSGDNGYTTCFIPGNLPF
KLEKLVDNYYRLVTERTLDRELISGYNITITAIDQGTPALSTETHISLLVTDINDNSP
VFHQDSYSAYIPENNPRGASIFSVRAHDLDSNENAQITYSLIEDTIQGAPLSAYLSIN
SDTGVLYALRSFDYEQFRDMQLKVMARDSGDPPLSSNVSLSLFLLDQNDNAPEILYPA
LPTDGSTGVELAPLSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGLFSVGLHTG
EVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRISDILADLGSLEPSA
KPNDSDLTLYLVVAAAAVSCVFLAFVIVLLAHRLRRWHKSRLLQASGGGLASMPGSHF
VGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLISQESCEKKGFLSAPQSLL
EDKKEPFSQVNFCDECISYLEKNNS"
BASE COUNT 659 a 716 c 643 g 598 t
ORIGIN
1 cgataccctt ggtactggac tggaagaaaa ctacgaagtg agagagccat gaagattcag
61 aaaaagctga ctggctgcag caggctgatg cttctgtgtc tttctctgga gctgctgttg
121 gaagctgggg ctgggaatat tcactactca gtgccggaag agacagacaa aggttccttc
181 gtaggcaaca tcgccaagga cctagggctg caaccccagg agctggcaga tggcggagtc
241 cgcatcgtct ccagaggtag gatgccgctt ttcgctctga atcctagaag tggcagcttg
301 atcaccgcgc gcaggataga ccgggaggag ctctgcgctc agagcatgcc gtgtctcgtg
361 agttttaata tccttgttga ggataaaatg aagctttttc ctgttgaagt agaaataatt
421 gatattaatg acaacactcc ccaattccag ttagaggaac tggagtttaa aatgaatgaa
481 ataacgactc caggtaccag aatctcattg ccttttgggc aagaccttga tgtgggtatg
541 aactcactcc agagctacca actcagctct aaccctcatt tctccctgga tgtgcaacag
601 ggagccgatg ggcctcaaca tccagagatg gtgctgcaga gtcccttaga cagagaagaa
661 gaagctgtcc accacctcat cctcacagct tctgatgggg gtgaaccagt ccgttcaggg
721 accctcagaa tttacattca ggtggtggat gcaaatgaca atcctccagc atttactcag
781 gcacaatacc atataaatgt ccccgaaaac gtgccgctgg gtactcagct gctcatggta
841 aatgccactg accctgatga gggagccaat ggggaagtaa cgtactcctt tcacaatgta
901 gaccacagag tggcccaaat atttcgttta gattcttaca caggagaaat atcaaataaa
961 gaaccactag atttcgaaga atacaaaatg tattcaatgg aagttcaagc ccaggatggt
1021 gcggggctca tggctaaagt taaggtactg atcaaagttt tggatgtaaa tgataatgcc
1081 ccagaagtga ccatcacctc tgtcaccact gcagttccag aaaactttcc tcctgggacc
1141 ataattgctc ttatcagtgt gcatgaccag gactcaggag acaatggcta caccacatgt
1201 ttcattcctg gaaatttacc ctttaaattg gaaaagttag ttgataatta ttaccgttta
1261 gtgactgaaa gaacactgga cagagaactt atctctgggt acaacatcac aataacagca
1321 atagaccaag gaactccagc tctatctact gaaactcaca tttcactact agtgacagat
1381 atcaatgaca actccccagt cttccatcag gactcctact ctgcctacat tcccgaaaac
1441 aaccccagag gagcctccat cttctctgtg agggcccacg acttggacag caatgagaat
1501 gcacaaatca cttactccct aatagaggac actatccagg gggcacccct atctgcctac
1561 ctctccatca actccgacac tggggtcctg tatgcgctgc gatccttcga ctatgagcag
1621 ttccgggaca tgcaactgaa agtgatggcg cgggacagtg gggatccgcc cctcagcagc
1681 aacgtgtctc tcagcctatt cctgctggac cagaacgaca acgcgcccga gatcctgtac
1741 cccgccctcc ccacagatgg ttctaccggc gtggagctgg cgcccctctc cgcagagccc
1801 ggctacctgg tgaccaaggt ggtggcggtg gacagagact cgggccagaa cgcctggctg
1861 tcctaccgcc tgctcaaggc cagcgagccg ggactcttct cggtgggtct gcacacgggc
1921 gaggtgcgca cggcgcgagc cctgctggac agagacgcgc tcaagcagag tctcgtggtg
1981 gccgtccagg accacggcca gcccccgctc tccgccactg tcacgctcac cgtggccgtg
2041 gccgacagga tctccgacat cctggccgac ctgggcagcc tcgagccctc cgccaaaccc
2101 aacgattcgg acctcactct gtacctggtg gtggcggcgg ccgcggtctc ctgcgtcttc
2161 ctggccttcg tcatcgtgct gctggcgcac aggctgcggc gctggcacaa gtcacgtctg
2221 ctacaggctt cgggaggcgg cttagcgagc atgcccggtt cgcactttgt gggcgtggac
2281 ggggttcggg ctttcctgca gacctattcc cacgaggtct ccctcactgc ggactcgcgg
2341 aagagccacc tgattttccc ccagcccaac tatgcggaca cactcatcag ccaggagagc
2401 tgtgagaaaa agggttttct atcagcaccc cagtctttac ttgaagacaa aaaggaacca
2461 ttttctcagg taaacttttg tgatgaatgt atcagctatc tagagaaaaa taattcttga
2521 tttaacttac tagcgttcgc tctttgctac agatagttct tctaacccat gtatctttgt
2581 agctttttat tacaagtcct gcaaaatcac gattga
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