LOCUS BC112013 2658 bp mRNA linear HUM 21-JAN-2006
DEFINITION Homo sapiens cadherin 17, LI cadherin (liver-intestine), mRNA (cDNA
clone MGC:138218 IMAGE:8327481), complete cds.
ACCESSION BC112013
VERSION BC112013.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2658)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2658)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (19-JAN-2006) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 4 Row: d Column: 7.
FEATURES Location/Qualifiers
source 1..2658
/db_xref="H-InvDB:HIT000340142"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:138218 IMAGE:8327481"
/tissue_type="Cerebellum, Uterus, Testis, PCR rescued
clones"
/clone_lib="NIH_MGC_338"
/lab_host="DH10B"
/note="Vector: pCR4-TOPO with reversed insert; Clone
identification sequence tag: CGTATTAG"
gene 1..2658
/gene="CDH17"
/gene_synonym="CDH16"
/gene_synonym="HPT-1"
/gene_synonym="HPT1"
/db_xref="GeneID:1015"
/db_xref="HGNC:HGNC:1756"
/db_xref="IMGT/GENE-DB:1756"
/db_xref="MIM:603017"
CDS 99..2597
/gene="CDH17"
/gene_synonym="CDH16"
/gene_synonym="HPT-1"
/gene_synonym="HPT1"
/codon_start=1
/product="cadherin 17, precursor"
/protein_id="AAI12014.1"
/db_xref="GeneID:1015"
/db_xref="HGNC:HGNC:1756"
/db_xref="IMGT/GENE-DB:1756"
/db_xref="MIM:603017"
/translation="MILQAHLHSLCLLMLYLATGYGQEGKFSGPLKPMTFSIYEGQEP
SQIIFQFKANPPAVTFELTGETDNIFVIEREGLLYYNRALDRETRSTHNLQVAALDAN
GIIVEGPVPITIEVKDINDNRPTFLQSKYEGSVRQNSRPGKPFLYVNATDLDDPATPN
GQLYYQIVIQLPMINNVMYFQINNKTGAISLTREGSQELNPAKNPSYNLVISVKDMGG
QSENSFSDTTSVDIIVTENIWKAPKPVEMVENSTDPHPIKITQVRWNDPGAQYSLVDK
EKLPRFPFSIDQEGDIYVTQPLDREEKDAYVFYAVAKDEYGKPLSYPLEIHVKVKDIN
DNPPTCPSPVTVFEVQENERLGNSIGTLTAHDRDEENTANSFLNYRIVEQTPKLPMDG
LFLIQTYAGMLQLAKQSLKKQDTPQYNLTIEVSDKDFKTLCFVQINVIDINDQIPIFE
KSDYGNLTLAEDTNIGSTILTIQATDADEPFTGSSKILYHIIKGDSEGRLGVDTDPHT
NTGYVIIKKPLDFETAAVSNIVFKAENPEPLVFGVKYNASSFAKFTLIVTDVNEAPQF
SQHVFQAKVSEDVAIGTKVGNVTAKDPEGLDISYSLRGDTRGWLKIDHVTGEIFSVAP
LDREAGSPYRVQVVATEVGGSSLSSVSEFHLILMDVNDNPPRLAKDYTGLFFCHPLSA
PGSLIFEATDDDQHLFRGPHFTFSLGSGSLQNDWEVSKINGTHARLSTRHTDFEEREY
VVLIRINDGGRPPLEGIVSLPVTFCSCVEGSCFRPAGHQTGIPTVGMAVGILLTTLLV
IGIILAVVFIRIKKDKGKDNVESAQASEVKPLRS"
BASE COUNT 787 a 583 c 599 g 689 t
ORIGIN
1 gaattcgccc ttgcaagagt ctcgaccact gaatggaaga aaaggacttt taaccaccat
61 tttgtgactt acagaaagga atttgaataa agaaaactat gatacttcag gcccatcttc
121 actccctgtg tcttcttatg ctttatttgg caactggata tggccaagag gggaagttta
181 gtggacccct gaaacccatg acattttcta tttatgaagg ccaagaaccg agtcaaatta
241 tattccagtt taaggccaat cctcctgctg tgacttttga actaactggg gagacagaca
301 acatatttgt gatagaacgg gagggacttc tgtattacaa cagagccttg gacagggaaa
361 caagatctac tcacaatctc caggttgcag ccctggacgc taatggaatt atagtggagg
421 gtccagtccc tatcaccata gaagtgaagg acatcaacga caatcgaccc acgtttctcc
481 agtcaaagta cgaaggctca gtaaggcaga actctcgccc aggaaagccc ttcttgtatg
541 tcaatgccac agacctggat gatccggcca ctcccaatgg ccagctttat taccagattg
601 tcatccagct tcccatgatc aacaatgtta tgtactttca gatcaacaac aaaacgggag
661 ccatctctct tacccgagag ggatctcagg aattgaatcc tgctaagaat ccttcctata
721 atctggtgat ctcagtgaag gacatgggag gccagagtga gaattccttc agtgatacca
781 catctgtgga tatcatagtg acagagaata tttggaaagc accaaaacct gtggagatgg
841 tggaaaactc aactgatcct caccccatca aaatcactca ggtgcggtgg aatgatcccg
901 gtgcacaata ttccttagtt gacaaagaga agctgccaag attcccattt tcaattgacc
961 aggaaggaga tatttacgtg actcagccct tggaccgaga agaaaaggat gcatatgttt
1021 tttatgcagt tgcaaaggat gagtacggaa aaccactttc atatccgctg gaaattcatg
1081 taaaagttaa agatattaat gataatccac ctacatgtcc gtcaccagta accgtatttg
1141 aggtccagga gaatgaacga ctgggtaaca gtatcgggac ccttactgca catgacaggg
1201 atgaagaaaa tactgccaac agttttctaa actacaggat tgtggagcaa actcccaaac
1261 ttcccatgga tggactcttc ctaatccaaa cctatgctgg aatgttacag ttagctaaac
1321 agtccttgaa gaagcaagat actcctcagt acaacttaac gatagaggtg tctgacaaag
1381 atttcaagac cctttgtttt gtgcaaatca acgttattga tatcaatgat cagatcccca
1441 tctttgaaaa atcagattat ggaaacctga ctcttgctga agacacaaac attgggtcca
1501 ccatcttaac catccaggcc actgatgctg atgagccatt tactgggagt tctaaaattc
1561 tgtatcatat cataaaggga gacagtgagg gacgcctggg ggttgacaca gatccccata
1621 ccaacaccgg atatgtcata attaaaaagc ctcttgattt tgaaacagca gctgtttcca
1681 acattgtgtt caaagcagaa aatcctgagc ctctagtgtt tggtgtgaag tacaatgcaa
1741 gttcttttgc caagttcacg cttattgtga cagatgtgaa tgaagcacct caattttccc
1801 aacacgtatt ccaagcgaaa gtcagtgagg atgtagctat aggcactaaa gtgggcaatg
1861 tgactgccaa ggatccagaa ggtctggaca taagttattc actgagggga gacacaagag
1921 gttggcttaa aattgaccac gtgactggtg agatctttag tgtggctcca ttggacagag
1981 aagccggaag tccatatcgg gtacaagtgg tggccacaga agtagggggg tcttccttga
2041 gctctgtgtc agagttccac ctgatcctta tggatgtgaa tgacaaccct cccaggctag
2101 ccaaggacta cacgggcttg ttcttctgcc atcccctcag tgcacctgga agtctcattt
2161 ttgaggctac tgatgatgat cagcacttat ttcggggtcc ccattttaca ttttccctcg
2221 gcagtggaag cttacaaaac gactgggaag tttccaaaat caatggtact catgcccgac
2281 tgtctaccag gcacacagac tttgaggaga gggagtatgt cgtcttgatc cgcatcaatg
2341 atgggggtcg gccacccttg gaaggcattg tttctttacc agttacattc tgcagttgtg
2401 tggaaggaag ttgtttccgg ccagcaggtc accagactgg gatacccact gtgggcatgg
2461 cagttggtat actgctgacc acccttctgg tgattggtat aattttagca gttgtgttta
2521 tccgcataaa gaaggataaa ggcaaagata atgttgaaag tgctcaagca tctgaagtca
2581 aacctctgag aagctgaatt tgaaaaggaa tgtttgaatt tatatagcaa gtgctatttc
2641 agcaacaacc atctcatc
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