LOCUS BC111959 1230 bp mRNA linear HUM 09-JUN-2008
DEFINITION Homo sapiens tripartite motif family-like 2, mRNA (cDNA clone
MGC:138164 IMAGE:8327427), complete cds.
ACCESSION BC111959
VERSION BC111959.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1230)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1230)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (19-JAN-2006) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein, NIMH
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 4 Row: b Column: 1.
FEATURES Location/Qualifiers
source 1..1230
/db_xref="H-InvDB:HIT000340088"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:138164 IMAGE:8327427"
/tissue_type="Brain, cerebral cortex and lung, PCR rescued
clones"
/clone_lib="NIH_MGC_323"
/note="Vector: pCR4-TOPO with reversed insert; Clone
identification sequence tag: ATGAAGGC"
gene 1..1230
/gene="TRIML2"
/gene_synonym="SPRYD6"
/db_xref="GeneID:205860"
/db_xref="HGNC:HGNC:26378"
CDS 31..1194
/gene="TRIML2"
/gene_synonym="SPRYD6"
/codon_start=1
/product="tripartite motif family-like 2"
/protein_id="AAI11960.1"
/db_xref="GeneID:205860"
/db_xref="HGNC:HGNC:26378"
/translation="MVCGIQEAAENYRKLFQEILNTSREKLEAAKSILTDEQERMAMI
QEEEQNFKKMIESEYSMRLRLLNEECEQNLQRQQECISDLNLRETLLNQAIKLATELE
EMFQEMLQRLGRVGRENMEKLKESEARASEQVRSLLKLIVELEKKCGEGTLALLKNAK
YSLERSKSLLLEHLEPAHITDLSLCHIRGLSSMFRVLQRHLTLDPETAHPCLALSEDL
RTMRLRHGQQDGAGNPERLDFSAMVLAAESFTSGRHYWEVDVEKATRWQVGIYHGSAD
AKGSTARASGEKVLLTGSVMGTEWTLWVFPPLKRLFLEKKLDTVGVFLDCEHGQISFY
NVTEMSLIYNFSHCAFQGALRPVFSLCIPNGDTSPDSLTILQHGPSCDATVSP"
BASE COUNT 353 a 273 c 334 g 270 t
ORIGIN
1 tgcttccagt cccaggagca caaacatcac atggtgtgtg ggatacaaga ggctgctgag
61 aattacagga agttattcca ggaaatattg aacacatcga gggagaaact tgaagcagct
121 aaaagcatat tgactgatga gcaagaaaga atggcgatga ttcaggaaga ggaacaaaat
181 tttaaaaaga tgattgagtc tgagtatagt atgagactcc ggttgttgaa tgaagagtgt
241 gagcagaatc tccagagaca gcaggaatgc atatctgact tgaacctgag agaaaccctt
301 ctgaatcaag cgatcaagct tgccaccgag ctagaggaga tgttccagga aatgctacag
361 agactgggcc gtgtggggag agagaacatg gagaaactga aggagagtga agccagggct
421 tctgaacagg tccgcagcct cctaaagctc atcgtggagc ttgagaaaaa gtgtggggaa
481 ggcaccttgg cattgctcaa gaatgcaaaa tactctttag aaaggagcaa gtcactgctg
541 cttgagcatc tggagcccgc tcatatcaca gacctgagtt tatgccacat aagaggactc
601 agcagcatgt tcagagtact ccagagacat ttaacattgg atcctgaaac agctcatccc
661 tgcctggcac tatctgagga cctgagaact atgagattga gacatgggca gcaggatggg
721 gctggcaacc cagaaagatt ggatttcagt gccatggtgc tggctgcgga gagcttcacc
781 tcagggaggc actactggga ggtggacgtg gaaaaggcaa ccaggtggca agtgggcata
841 taccacggct ctgcagacgc gaagggcagc acggccagag cttccggaga gaaagtcttg
901 ctcacggggt cggtgatggg gaccgagtgg actctctggg tcttcccccc tctgaaaagg
961 ctcttcctgg aaaagaagtt ggacacagtt ggggttttcc ttgactgcga acacgggcag
1021 atatcattct acaatgtgac tgagatgtcc ctcatttaca atttctccca ttgcgccttc
1081 caaggagctc tcaggcctgt gttttccctc tgtatcccaa atggagacac aagtccagac
1141 tccctcacca tcttacaaca tggtccttct tgtgatgcta ctgttagccc ttaatcttct
1201 gtgtgtaaaa tccaagacca cgagacacca
//