LOCUS BC111735 3076 bp mRNA linear HUM 17-JAN-2006
DEFINITION Homo sapiens histone deacetylase 9, mRNA (cDNA clone
IMAGE:40036015), partial cds.
ACCESSION BC111735
VERSION BC111735.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3076)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3076)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (07-JAN-2006) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 17 Row: k Column: 14.
FEATURES Location/Qualifiers
source 1..3076
/db_xref="H-InvDB:HIT000340006"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:40036015"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_283"
/note="Vector: pCR-Blunt II-TOPO with reversed insert;
Clone identification sequence tag: ACG"
gene <1..>3076
/gene="HDAC9"
/gene_synonym="HD7"
/gene_synonym="HDAC"
/gene_synonym="HDAC7"
/gene_synonym="HDAC7B"
/gene_synonym="HDAC9B"
/gene_synonym="HDAC9FL"
/gene_synonym="HDRP"
/gene_synonym="KIAA0744"
/gene_synonym="MITR"
/db_xref="GeneID:9734"
/db_xref="HGNC:HGNC:14065"
/db_xref="IMGT/GENE-DB:14065"
/db_xref="MIM:606543"
CDS <1..>3076
/gene="HDAC9"
/gene_synonym="HD7"
/gene_synonym="HDAC"
/gene_synonym="HDAC7"
/gene_synonym="HDAC7B"
/gene_synonym="HDAC9B"
/gene_synonym="HDAC9FL"
/gene_synonym="HDRP"
/gene_synonym="KIAA0744"
/gene_synonym="MITR"
/codon_start=3
/product="HDAC9 protein"
/protein_id="AAI11736.1"
/db_xref="GeneID:9734"
/db_xref="HGNC:HGNC:14065"
/db_xref="IMGT/GENE-DB:14065"
/db_xref="MIM:606543"
/translation="HSMISSVDVKSEVPVGLEPISPLDLRTDLRMMMPVVDPVVREKQ
LQQELLLIQQQQQIQKQLLIAEFQKQHENLTRQHQAQLQEHIKLQQELLAIKQQQELL
EKEQKLEQQRQEQEVERHRREQQLPPLRGKDRGRERAVASTEVKQKLQEFLLSKSATK
DTPTNGKNHSVSRHPKLWYTAAHHTSLDQSSPPLSGTSPSYKYTLPGAQDAKDDFPLR
KTESSVSSSSPGSGPSSPNNGPTGSVTENETSVLPPTPHAEQMVSQQRILIHEDSMNL
LSLYTSPSLPNITLGLPAVPSQLNASNSLKEKQKCETQTLRQGVPLPGQYGGSIPASS
SHPHVTLEGKPPNSSHQALLQHLLLKEQMRQQKLLVAGGVPLHPQSPLATKERISPGI
RGTHKLPRHRPLNRTQSAPLPQSTLAQLVIQQQHQQFLEKQKQYQQQIHMNKLLSKSI
EQLKQPGSHLEEAEEELQGDQAMQEDRAPSSGNSTRSDSSACVDDTLGQVGAVKVKEE
PVDSDEDAQIQEMESGEQAAFMQQPFLEPTHTRALSVRQAPLAAVGMDGLEKHRLVSR
THSSPAASVLPHPAMDRPLQPGSATGIAYDPLMLKHQCVCGNSTTHPEHAGRIQSIWS
RLQETGLLNKCERIQGRKASLEEIQLVHSEHHSLLYGTNPLDGQKLDPRILLGDDSQK
FFSSLPCGGLGVDSDTIWNELHSSGAARMAVGCVIELASKVASGELKNGFAVVRPPGH
HAEESTAMGFCFFNSVAITAKYLRDQLNISKILIVDLDVHHGNGTQQAFYADPSILYI
SLHRYDEGNFFPGSGAPNEVGTGLGEGYNINIAWTGGLDPPMGDVEYLEAFRTIVKPV
AKEFDPDMVLVSAGFDALEGHTPPLGGYKVTAKCFGHLTKQLMTLADGRVVLALEGGH
DLTAICDASEACVNALLGNELEPLAEDILHQSPNMNAVISLQKIIEIQSKYWKSVRMV
AVPRGCALAGAQLQEETETVSALASLTVDVEQPFAQEDSRTAGEPMERSQPC"
BASE COUNT 850 a 778 c 763 g 685 t
ORIGIN
1 tgcacagtat gatcagctca gtggatgtga agtcagaagt tcctgtgggc ctggagccca
61 tctcaccttt agacctaagg acagacctca ggatgatgat gcccgtggtg gaccctgttg
121 tccgtgagaa gcaattgcag caggaattac ttcttatcca gcagcagcaa caaatccaga
181 agcagcttct gatagcagag tttcagaaac agcatgagaa cttgacacgg cagcaccagg
241 ctcagcttca ggagcatatc aagttgcaac aggaacttct agccataaaa cagcaacaag
301 aactcctaga aaaggagcag aaactggagc agcagaggca agaacaggaa gtagagaggc
361 atcgcagaga acagcagctt cctcctctca gaggcaaaga tagaggacga gaaagggcag
421 tggcaagtac agaagtaaag cagaagcttc aagagttcct actgagtaaa tcagcaacga
481 aagacactcc aactaatgga aaaaatcatt ccgtgagccg ccatcccaag ctctggtaca
541 cggctgccca ccacacatca ttggatcaaa gctctccacc ccttagtgga acatctccat
601 cctacaagta cacattacca ggagcacaag atgcaaagga tgatttcccc cttcgaaaaa
661 ctgaatcctc agtcagtagc agttctccag gctctggtcc cagttcacca aacaatgggc
721 caactggaag tgttactgaa aatgagactt cggttttgcc ccctacccct catgccgagc
781 aaatggtttc acagcaacgc attctaattc atgaagattc catgaacctg ctaagtcttt
841 atacctctcc ttctttgccc aacattacct tggggcttcc cgcagtgcca tcccagctca
901 atgcttcgaa ttcactcaaa gaaaagcaga agtgtgagac gcagacgctt aggcaaggtg
961 ttcctctgcc tgggcagtat ggaggcagca tcccggcatc ttccagccac cctcatgtta
1021 ctttagaggg aaagccaccc aacagcagcc accaggctct cctgcagcat ttattattga
1081 aagaacaaat gcgacagcaa aagcttcttg tagctggtgg agttccctta catcctcagt
1141 ctcccttggc aacaaaagag agaatttcac ctggcattag aggtacccac aaattgcccc
1201 gtcacagacc cctgaaccga acccagtctg cacctttgcc tcagagcacg ttggctcagc
1261 tggtcattca acagcaacac cagcaattct tggagaagca gaagcaatac cagcagcaga
1321 tccacatgaa caaactgctt tcgaaatcta ttgaacaact gaagcaacca ggcagtcacc
1381 ttgaggaagc agaggaagag cttcaggggg accaggcgat gcaggaagac agagcgccct
1441 ctagtggcaa cagcactagg agcgacagca gtgcttgtgt ggatgacaca ctgggacaag
1501 ttggggctgt gaaggtcaag gaggaaccag tggacagtga tgaagatgct cagatccagg
1561 aaatggaatc tggggagcag gctgctttta tgcaacagcc tttcctggaa cccacgcaca
1621 cacgtgcgct ctctgtgcgc caagctccgc tggctgcggt tggcatggat ggattagaga
1681 aacaccgtct cgtctccagg actcactctt cccctgctgc ctctgtttta cctcacccag
1741 caatggaccg ccccctccag cctggctctg caactggaat tgcctatgac cccttgatgc
1801 tgaaacacca gtgcgtttgt ggcaattcca ccacccaccc tgagcatgct ggacgaatac
1861 agagtatctg gtcacgactg caagaaactg ggctgctaaa taaatgtgag cgaattcaag
1921 gtcgaaaagc cagcctggag gaaatacagc ttgttcattc tgaacatcac tcactgttgt
1981 atggcaccaa ccccctggac ggacagaagc tggaccccag gatactccta ggtgatgact
2041 ctcaaaagtt tttttcctca ttaccttgtg gtggacttgg ggtggacagt gacaccattt
2101 ggaatgagct acactcgtcc ggtgctgcac gcatggctgt tggctgtgtc atcgagctgg
2161 cttccaaagt ggcctcagga gagctgaaga atgggtttgc tgttgtgagg ccccctggcc
2221 atcacgctga agaatccaca gccatggggt tctgcttttt taattcagtt gcaattaccg
2281 ccaaatactt gagagaccaa ctaaatataa gcaagatatt gattgtagat ctggatgttc
2341 accatggaaa cggtacccag caggcctttt atgctgaccc cagcatcctg tacatttcac
2401 tccatcgcta tgatgaaggg aactttttcc ctggcagtgg agccccaaat gaggttggaa
2461 caggccttgg agaagggtac aatataaata ttgcctggac aggtggcctt gatcctccca
2521 tgggagatgt tgagtacctt gaagcattca ggaccatcgt gaagcctgtg gccaaagagt
2581 ttgatccaga catggtctta gtatctgctg gatttgatgc attggaaggc cacacccctc
2641 ctctaggagg gtacaaagtg acggcaaaat gttttggtca tttgacgaag caattgatga
2701 cattggctga tggacgtgtg gtgttggctc tagaaggagg acatgatctc acagccatct
2761 gtgatgcatc agaagcctgt gtaaatgccc ttctaggaaa tgagctggag ccacttgcag
2821 aagatattct ccaccaaagc ccgaatatga atgctgttat ttctttacag aagatcattg
2881 aaattcaaag caagtattgg aagtcagtaa ggatggtggc tgtgccaagg ggctgtgctc
2941 tggctggtgc tcagttgcaa gaggagacag agaccgtttc tgccctggcc tccctaacag
3001 tggatgtgga acagcccttt gctcaggaag acagcagaac tgctggtgag cctatggaaa
3061 ggagccagcc ttgtga
//