LOCUS BC111733 3079 bp mRNA linear HUM 06-JUN-2006
DEFINITION Homo sapiens DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11
(CHL1-like helicase homolog, S. cerevisiae), mRNA (cDNA clone
MGC:133249 IMAGE:40035545), complete cds.
ACCESSION BC111733
VERSION BC111733.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3079)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3079)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (07-JAN-2006) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 17 Row: k Column: 10.
FEATURES Location/Qualifiers
source 1..3079
/db_xref="H-InvDB:HIT000340004_03"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:133249 IMAGE:40035545"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_283"
/note="Vector: pCR-Blunt II-TOPO with reversed insert;
Clone identification sequence tag: TGTTAGTG"
gene 1..3079
/gene="DDX11"
/gene_synonym="CHL1"
/gene_synonym="CHLR1"
/gene_synonym="KRG2"
/gene_synonym="MGC9335"
/db_xref="GeneID:1663"
/db_xref="HGNC:HGNC:2736"
/db_xref="MIM:601150"
CDS 252..2972
/gene="DDX11"
/gene_synonym="CHL1"
/gene_synonym="CHLR1"
/gene_synonym="KRG2"
/gene_synonym="MGC9335"
/codon_start=1
/product="DDX11 protein"
/protein_id="AAI11734.1"
/db_xref="GeneID:1663"
/db_xref="HGNC:HGNC:2736"
/db_xref="MIM:601150"
/translation="MANETQKVGAIHFPFPFTPYSIQEDFMAELYRVLEAGKIGIFES
PTGTGKSLSLICGALSWLRDFEQKKREEEARLLETGTGPLHDEKDESLCLSSSCEGAA
GTPRPAGEPAWVTQFVQKKEERDLVDRLKAEQARRKQREERLQQLQHRVQLKYAAKRL
RQEEEERENLLRLSREMLETGPEAERLEQLESGEEELVLAEYESDEEKKVASRVDEDE
DDLEEEHITKIYYCSRTHSQLAQFVHEVKKSPFGKDVRLVSLGSRQNLCVNEDVKSLG
SVQLINDRCVDMQRSRHEKKKGAEEEKPKRRRQEKQAACPFYNHEQMGLLRDEALAEV
KDMEQLLALGKEARACPYYGSRLAIPAAQLVVLPYQMLLHAATRQAAGIRLQDQVVII
DEAHNLIDTITGMHSVEVSGSQLCQAHSQLLQYVERYGKRLKAKNLMYLKQILYLLEK
FVAVLGGNIKQNPNTQSLSQTGTELKTINDFLFQSQIDNINLFKVQRYCEKSMISRKL
FGFTERYGAVFSSREQPKLAGFQQFLQSLQPRTTEALAAPADESQASVPQPASPLMHI
EGFLAALTTANQDGRVILSRQGSLSQSTLKFLLLNPAVHFAQVVKECRAVVIAGGTMQ
PVSDFRQQLLACAGVEAERVVEFSCGHVIPPDNILPLVICIGVSNQPLEFTFQKRDLP
QMMDEVGRILCNLCSVVSGGVVCFFPSYEYLRQVHAHWEKGGLLGHLAARKKIFQEPK
SAHQVEQVLLAYSRCIQACGQERGPVTGALLLSVVGGKMSEGINFSDNLGRCVVMVGM
PFPNIRSAELQEKMAYLDQTLPRAPGQAPPGKALVENLCMKAVNQSIGRAIRHQKDFA
SIVLLDQRYARPPVLAKLPAWIRARVEVKATFGPAIAAVQKFHREKSASS"
BASE COUNT 690 a 829 c 966 g 594 t
ORIGIN
1 tgcgcagcgg cgggggttgt tccggctgcc tttcactgag gggacccgcc agtttctaac
61 tcagtggcgt ttgccctgat tcccggggcc tggctttcag cgtagcaatt ctgccggcga
121 agaaggtgag cgcagtgctg tgtggcagca gagctcctta ggacgaggag cagcgggacg
181 aggaagggca gactggtgaa atcgcaaact gggcgtctgt tccggcgccg gacccctatt
241 tgcaaaggtc catggctaat gaaacacaga aggttggtgc catccatttt ccttttccct
301 tcacacccta ttccatccag gaagacttca tggcagagct gtaccgggtt ttggaggctg
361 gcaagattgg gatatttgag agtccaactg gcactgggaa gtccttaagt cttatttgtg
421 gggccctctc ttggctccgt gactttgaac agaagaagcg tgaagaagag gcacgactcc
481 ttgaaactgg aactggcccc ttacatgatg agaaagatga atccctgtgt ctgtcttctt
541 cctgcgaagg ggctgcaggc accccgaggc ctgctggaga accggcctgg gttactcagt
601 ttgtgcagaa gaaagaagag agggacctgg tggaccgact aaaggcggag caggccagga
661 ggaagcagcg agaagaacgc ctgcagcagc tgcagcacag ggtgcagctc aagtatgcag
721 ccaagcgcct gaggcaggaa gaagaagaaa gagagaatct cctccgcctc agcagggaga
781 tgctagagac aggcccggag gctgagcggc tggagcagct ggagtctggg gaggaggagc
841 tggtcctcgc cgaatacgag agtgatgagg agaaaaaggt ggcgagcaga gtggatgagg
901 atgaggatga cctggaggaa gaacacataa ctaagattta ttactgtagt cggacacact
961 cccagctggc ccagtttgtg catgaggtga agaagagccc ctttggcaag gatgttcggc
1021 tggtctccct tggctcccgg cagaaccttt gtgtaaatga agacgtgaaa agcctaggtt
1081 ctgtgcagct tatcaacgac cgctgtgtgg acatgcagag aagcaggcac gagaagaaga
1141 aaggagctga ggaggagaag ccaaagagga ggaggcagga gaagcaggca gcctgcccct
1201 tctacaacca cgagcagatg ggccttctcc gggatgaggc cctggcagag gtgaaggaca
1261 tggagcagct gctggccctt gggaaggagg cccgggcctg tccctattac gggagccgcc
1321 ttgccatccc tgcagcccag ctggtggtgc tgccctatca gatgctgctg catgcggcca
1381 ctcggcaggc cgcgggcatc cggctgcagg accaggtggt gatcatcgac gaggcgcaca
1441 acctgatcga caccatcacg ggcatgcaca gcgtggaggt cagcggctcc cagctctgcc
1501 aggcccattc ccagctgctg cagtacgtgg agcgatacgg gaagcgtttg aaggccaaga
1561 acctgatgta cctgaagcag atcctgtatt tgctggagaa attcgtggct gtgctagggg
1621 ggaacattaa gcaaaatccc aatacacaga gtctgtcaca gacagggacg gagctgaaga
1681 ccatcaacga ctttctcttc cagagccaga tcgacaacat caacctgttc aaggtgcagc
1741 gatactgtga gaagagcatg atcagcagaa agctctttgg cttcactgaa cggtacggag
1801 cagtgttctc atcccgggag cagcccaaac tggctgggtt tcagcaattc ctgcagagcc
1861 tgcagcccag gacgactgaa gcacttgcag cccctgcaga cgagagtcag gccagcgtcc
1921 cgcaaccagc ttccccactg atgcacatcg aaggcttcct ggcagctctc actacggcca
1981 accaggacgg cagggtcatc ctgagccgcc aaggcagtct cagtcagagc accctgaagt
2041 ttttgctcct gaatccagct gtgcactttg cccaagtggt gaaggaatgc cgggcagtgg
2101 tcattgccgg ggggaccatg cagccggtgt ctgacttccg gcagcagctg ctggcctgtg
2161 ccggggtgga agctgagcgc gtggtggagt tttcctgtgg tcacgtgatc cctccagaca
2221 acatcctgcc ccttgtcatc tgcatcgggg tctccaacca gccgctagaa ttcacgttcc
2281 agaaaagaga cctgcctcag atgatggacg aggtgggtcg catcctctgt aacctgtgca
2341 gtgtggtttc tggaggggtg gtctgtttct tcccctccta cgagtacctg cgccaggtcc
2401 atgcccactg ggagaagggt ggcctgctgg gccatctggc tgccaggaag aagatattcc
2461 aggaacctaa gagcgcacac caggtagagc aggtgctgct ggcgtattcc aggtgcatcc
2521 aggcctgtgg ccaggagaga ggccccgtga caggggccct gctcctctct gtggttggag
2581 gaaagatgag tgaagggatc aacttctctg acaacctagg ccggtgtgtg gtgatggtgg
2641 gcatgccctt ccccaacatc aggtctgcag agctgcagga gaagatggcc tacttggatc
2701 aaaccctccc cagagccccc ggccaggcac ccccagggaa ggctctggtg gagaacctgt
2761 gcatgaaggc cgtcaaccag tccataggca gggccatcag gcaccagaag gattttgcca
2821 gcatagtgct cctggaccag cgatacgccc ggccccctgt cctggccaag ctgccggcct
2881 ggatccgagc ccgcgtggag gtcaaagcta cctttggccc cgccattgct gctgtgcaga
2941 agtttcaccg ggagaagtcg gcctcttcct gatgggcaac cacaccaccg cccggcgccg
3001 tgcccttcct ttgtcctgcc ctctggagac agtgtttgtc gtgggcgtgg tctgcaggga
3061 tcctgttaca aaggtgaaa
//